- Comp-neuro - lists.cnsorg.org

PhD position in network neuroscience at University of Sussex
by Luc Berthouze 29 Jul '20

29 Jul '20

Applications are invited for a fully-funded PhD scholarship to undertake research in network neuroscience at the University of Sussex. A number of conditions, such as Parkinson’s Disease, are referred to as ‘oscillopathies’ because there is evidence that some of their major symptoms are underpinned by pathological synchronisation of neurons in key networks. A promising form of treatment is that of online control of deep brain stimulation based on computational processing of brain signals. Therefore, new mathematical insights about how to detect and efficiently disrupt pathological processes can be rapidly translated to patient benefit. Using models of oscillations on networks, this project will seek to investigate the conditions (either on the oscillators themselves, or the connectivity, or factors that may frustrate the interplay between dynamics on and dynamics of the network) under which pathological oscillations in one small area of the brain can intermittently or otherwise ‘infect’ the wider network of the brain causing the pathological symptoms. This project will involve an active collaboration with Dr Simon Farmer at University College London (UCL). This 3-year studentship includes student fees and a tax-free stipend starting at £15,285 per annum. It also comes with a generous Research Training Support Grant. Start date is flexible. Eligibility All nationalities are eligible to apply for this studentship. You should have a first-class honour degree or equivalent, or an MSc degree (preferably), in Computer Science, Mathematics or Physics (or relevant disciplines). You will have (and enjoy using) strong analytical skills as well as excellent programming skills in at least one of C++, Python, Matlab. Applicants interested in the post, seeking further information or feedback on their suitability are encouraged to contact me. All applications must be made via http://www.sussex.ac.uk/study/phd/apply where you will find details of entry requirements. Please clearly state on your application form that you are applying for 'Dynamics on/of networks and oscillopathies'. Luc Berthouze Professor of Complex Systems University of Sussex

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2020 Big Data Neuroscience *free* Workshop Invitation
by Franco Pestilli 29 Jul '20

29 Jul '20

Dear All. We are organizing the 2020 Big Data Neuroscience workshop as an online event. It will be a 1-day event with 4 keynote speakers, software demos, and a series of lightning talks. http://neurosciencenetwork.org/ACNN_Workshop_2020.html We would like to invite you to register for the FREE event and consider signing up for a lighting talk. You are welcome to share this announcement broadly. Best regards, Franco *FRANCO PESTILLI*, *Ph.D.* | *Associate Professor* he/him | pestilli(a)utexas.edu | web <https://liberalarts.utexas.edu/psychology/faculty/fp4834> | github <https://github.com/francopestilli> | brainlife.io

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postdoc position in model-based fMRI at Harvard (Gershman/Buckner labs)
by Sam Gershman 29 Jul '20

29 Jul '20

The Gershman (gershmanlab.webfactional.com) and Buckner ( https://cnl.rc.fas.harvard.edu/) labs at Harvard University are seeking a postdoctoral fellow to work on a longitudinal functional MRI project. The aim of this project is to understand how computationally defined phenotypes change across time, and how these changes map onto dynamic functional networks in the human brain. Candidates must have a strong background in fMRI research and statistical analysis. Experience with computational cognitive modeling is preferred but not required. The start date for this position is on or around February 1, 2021, but this can be flexibly adjusted as needed. The position is fully funded for 2 years, with a possible extension to a 3rd year contingent on funding. We are an equal opportunity employer and all qualified applicants will receive consideration for employment without regard to race, color, religion, sex, national origin, disability status, protected veteran status, gender identity, sexual orientation, pregnancy and pregnancy-related conditions or any other characteristic protected by law. Interested applicants should contact Sam Gershman (gershman(a)fas.harvard.edu) along with a CV and list of references.

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Tenure-track / tenure-eligible computational neuroscience PI position at NIMH
by Atlas, Lauren (NIH/NCCIH) [E] 28 Jul '20

28 Jul '20

https://www.nimh.nih.gov/about/careers/job-vacancy-announcement-tenure-trac… Job Vacancy Announcement - Tenure-Track/Tenure Eligible Investigator, Computational Neuroscientist Department of Health and Human Services National Institutes of Health National Institute of Mental Health Division of Intramural Research Programs Tenure-Track/Tenure Eligible Investigator Computational Neuroscientist The Division of Intramural Research Programs (DIRP) of the National Institute of Mental Health (NIMH), National Institutes of Health (NIH), invites outstanding individuals to apply for a tenure-track/tenure eligible position in computational neuroscience. The NIMH DIRP has one of the largest systems and clinical neuroscience research communities in the world. Research groups work across species including drosophila, mice, rats, monkeys and humans. Facilities include a state-of-the-art high-performance computing facility as well as a rodent behavior core and high-field neuroimaging. The DIRP is a highly interactive research environment, and there are numerous opportunities for collaborative research within NIMH as well as with the broader NIH community. The successful individual will create and direct an independent research program on theoretical models of brain mechanisms of behavior. Example areas of research include but are not limited to -- reinforcement learning; decision making; theoretical accounts of neuromodulatory systems including dopamine, serotonin and norepinephrine; nonlinear dynamical systems; and neural plasticity and learning. We are particularly interested in individuals who have a demonstrated interest in computational psychiatry, developing models of human psychopathology, and collaborations with clinical groups focused on mental illness within the DIRP and broader research community. Research programs should focus on theory development but may also include experimental work that tests theoretical models. The unique investigator-based DIRP research support package encourages the development of a coherent, long time-horizon scientific program focused on generating deep insights into complex problems. Candidates must have earned a Ph.D. or M.D. and will have demonstrated experience as an outstanding independent investigator. An individual selected for the position is expected to build a dynamic and productive research laboratory, mentor and train scientists, and make use of the excellent opportunities for collaborative, translational, and high-risk/high-reward science available at the NIH. Laboratory space and startup funds, access to shared research facilities, and on-going research support are competitive with premier academic institutions. Salary is commensurate with experience and accomplishments and a full Civil Service package of benefits (including retirement, health, life and long-term care insurance, and a Thrift Savings Plan) is available. Applicants should send a curriculum vitae (CV), bibliography, statement of research interests, and three letters of reference to: Susan G. Amara, Ph.D., National Institute of Mental Health, c/o Jane Schriver via email to Jane.Schriver(a)nih.gov<mailto:Jane.Schriver@nih.gov>, indicating “ Computational Neuroscientist Recruit” in the subject line. Please include in your CV a description of your mentoring and outreach activities, especially those involving women and persons from racial/ethnic or other groups that are underrepresented in biomedical research. Applications will begin to be reviewed in August 2020 and continue until the position is filled.

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Postdoctoral researcher - Sleep expert for neurotechnology research project at Bitbrain (Zaragoza, Spain)
by Eduardo López-Larraz 28 Jul '20

28 Jul '20

We are looking for a postdoctoral sleep researcher to join Bitbrain <https://www.bitbrain.com/> and work on an EU-funded neurotechnology research project. The main objective will be to exploit some of the most recent advances in sleep research to develop interventions based on cutting-edge wearable neurotechnology for sleep (and sleep-mediated cognitive processes) improvement. The candidate will join Bitbrain <https://www.bitbrain.com/>’s interdisciplinary R&D department of applied neuroscience and neurotechnology and will lead all the R&D activities related to sleep. The candidate will have to: 1) design the R&D strategy of this new area in the company, which will require attending and participating in international events and networks, and 2) design and carry out a feasibility study in sleep improvement using innovative and practical technologies that can be used outside the lab. The position is initially offered for 12 months and includes a relocation and training package. *Requirements*: Sleep expert with a PhD degree in Neuroscience, Psychology, Biomedical Engineering or similar. Strong background in sleep research, understanding of EEG (required) and brain stimulation (desirable). Project management skills. Problem solving and potential of growth. English is required, Spanish is a plus. *Application Deadline*: 01.11.2020 More information and application procedure: https://euraxess.ec.europa.eu/jobs/545040

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Register now for Allen Institute Modeling Workshop - August 12-14
by Anton Arkhipov 27 Jul '20

27 Jul '20

TOWARDS MULTIPURPOSE MODELS OF CORTICAL CIRCUITS - JOIN US VIRTUALLY AUGUST 12-14 Join us for a virtual workshop, August 12-14, 2020, to learn and discuss how we can move towards "multipurpose models" that incorporate the true biological complexity of cortical circuits and faithfully reproduce multiple observables in many different situations. Hear from nearly twenty speakers as they emphasize open and publicly accessible models and associated tools to explore models from the conceptual to the biologically detailed. Dissemination, reproducibility, and free sharing of models and modeling software will be discussed. https://alleninstitute.org/what-we-do/brain-science/events-training/allen-i… Confirmed Speakers: Gaute Einevoll, University of Oslo & NMBU (Workshop Co-Chair) Anton Arkhipov, Allen Institute, MindScope Program (Workshop Co-Chair) Shawn Olsen, Allen Institute, MindScope Program Anna Devor, Boston University Keith Hengen, Washington University in St. Louis Terry Sejnowski, Salk Institute for Biological Studies Andreas Tolias, Baylor College of Medicine Clay Reid, M.D., Allen Institute for Brain Science Nuno da Costa, Allen Institute for Brain Science Stephanie Jones, Brown University Michael Reimann, EPFL Li-Huei Tsai, MIT David McCormick, University of Oregon Sacha van Albada, Research Centre Jülich Stefan Mihalas, Allen Institute, MindScope Program Greg Handy, University of Pittsburgh Luke Campagnola, Allen Institute for Brain Science Chris Harvey, Harvard Medical School Christof Koch, Allen Institute, MindScope Program EVENT DETAILS This three-day workshop will be hosted virtually and will feature a mix of presentations from leaders in the field, and discussion sessions for all participants. Wednesday, August 12 - Friday, August 14 ~8:00 am - 12:00 pm Pacific Time, daily Please register at the link above. The virtual conference login information will be sent to all registrants in advance of the event. Please contact events(a)alleninstitute.org<mailto:events@alleninstitute.org> with any questions. Anton Arkhipov Associate Investigator T: 206.548.8414 [cidimage001.png(a)01D5F0E2.E3F24C00] www.alleninstitute.org<https://nam12.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.alleni…>

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Applications for prestigious La Caixa Junior Leader Fellowships
by Serafim Rodrigues 27 Jul '20

27 Jul '20

To experienced postdocs, We are looking for candidates who have an interest in being hosted within our research group Mathematical, Computational and Experimental Neuroscience (MCEN) at BCAM (Basque Centre for Applied Mathematics): http://www.bcamath.org/en/ The La Caixa Foundation has announced 45 very competitive Junior Leader Fellowships.The Postdoctoral Junior Leader fellowships programme is aimed at hiring excellent researchers, of any nationality, who wish to continue their research career in Spain or Portugal in the STEM area (Science, Technology, Engineering and Mathematics). The objectives of this programme are to foster high-quality, innovative research in Spain and Portugal and to support the best scientific talent by providing them with an attractive, competitive environment in which to conduct excellent research. The fellows can carry their research at any university or research centre in Spain or Portugal. For details please refer to the links below: https://fundacionlacaixa.org/en/investigacion-y-becas/becas-de-la-caixa/pos… Programme Rules: https://fundacionlacaixa.org/documents/10280/675659/programme-rules-junior-… If you are interested, please contact: srodrigues(a)bcamath.org regards Serafim -- Serafim Rodrigues Group Leader *BCAM - *Basque Center for Applied Mathematics Alameda de Mazarredo, 14 E-48009 Bilbao, Basque Country - Spain Tel. +34 946 567 842 srodrigues(a)bcamath.org | www.bcamath.org/srodrigues *(**matematika mugaz bestalde)*

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2 postoc positions
by German Sumbre 27 Jul '20

27 Jul '20

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Open Position Computational Neuroscientist / Algorithm Engineer (100%) at MaxWell Biosystems
by david.jaeckel＠mxwbio.com 27 Jul '20

27 Jul '20

Dear all I would like to announce the following open position at MaxWell Biosystems AG in Zürich, Switzerland: Computational Neuroscientist / Algorithm Engineer (100%) Our technology, which consists of a custom designed integrated circuit, an FPGA-based data acquisition platform and our software suite MaxLab Live, generates vast amounts of data while electrically imaging neuronal tissue. Such data needs to be processed, analyzed and visualized online during operation. At the same time, our customers in drug discovery and neuroscience want to focus on their pharmaceutical and scientific questions, which requires to abstract and hide most of the technical complexity, while still providing sufficient flexibility to adapt the application to specific needs. We are constantly innovating and improving algorithms to extract novel and more accurate multiparametric electrophysiology metrics, which enable faster and more reliable drug discovery. To strengthen our R&D team and to drive and implement this challenging task, we are now seeking for a highly motivated computational neuroscientist. Your Responsibilities * Develop and support our performance critical data acquisition and analysis software platform * Contribute to our Python toolboxes for data analysis and visualization * Develop and validate analysis methods to extract multiparametric electrophysiology metrics * Understand customer needs and continuously improve user experience Your Profile * PhD in computational neuroscience or related (awarded after December 31st, 2016) * Proven strong scientific achievements in the form of first-author peer-reviewed publications in computational neuroscience or related * Strong experience in Python and competency working in a Linux/Unix environment * Proficiency in other languages, e.g., R, MATLAB, C++ is a plus * Knowledge of neuron physiology and electrophysiology * Proficiency in multiparametric pharmacological assays is a plus * Experience in microelectrode array (MEA) technology data analysis is a plus * Skilled in analysis of large-scale dataset * Enjoy solving complex problems and working in a team * Excellent English language skills * The applicant must not have resided or carried out his/her main activity for more than a total of 12 months over the last three years in Switzerland Are you motivated, innovative and committed to delivering first-rate performance? Have you ever wanted to work with cutting-edge technology involving both engineering and biology? Do you enjoy working in an international, multidisciplinary, and interactive team? Then we might have a position for you. Join MaxWell Biosystems in innovating the future of electrophysiology for drug discovery and basic research. Michele Fiscella looks forward to receiving your application documents (cover letter, resume, letter of recommendation and degrees including transcripts) by email at <mailto:hr@mxwbio.com> hr(a)mxwbio.com. - Best Regards, David -- David Jäckel Ph.D. | Senior Product Manager MaxWell Biosystems AG | Albisriederstrasse 253 | CH-8047 Zurich | Switzerland main: +41 44 244 24 24 | direct: +41 44 244 24 16 | <https://mxwbio-ch.3cx.net/join/davidjaeckel> click2meet e: <mailto:%20david.jaeckel@mxwbio.com> david.jaeckel(a)mxwbio.com | w: <http://www.mxwbio.com/> www.mxwbio.com Meet us | at <https://www.isscr.org/meetings-events/annual-meetings/isscr-annual-meeting-…> ISSCR, Boston, USA, Jun 24 – 27 | at <http://www.isscr.org/meetings-events/international-symposia/shanghai-2020-s…> ISSCR Symp., Shanghai, China, Sep 11 – 13 | at <https://www.safetypharmacology.org/AM2020/index.asp> SPS 2020, Montreal, Canada, Sep 14 – 16 Follow us on <https://twitter.com/mxwbio> Twitter and <https://www.linkedin.com/company/maxwell-biosystems> LinkedIn The information contained in this email and any attached files is legally privileged and confidential intended only for the use of the addressee. If you have received this email in error, please notify the sender and promptly delete this email and any attachments. Thank you.

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PhD position in theoretical and experimental neuroscience
by Nicolas P. Rougier 24 Jul '20

24 Jul '20

PhD position in theoretical and experimental neuroscience Application deadline: 15/08/2020 What: PhD position in theoretical and experimental neuroscience Where: Bordeaux, France When: October 2020 (3 years duration) Who: Nicolas Rougier (Inria) & Arthur Leblois (CNRS) A PhD position is available at Inria Bordeaux Sud-Ouest center and the Institute of Neurodegenerative Disease in Bordeaux, France. Candidate profile ================= The future PhD candidate must have a strong experience at both the theoretical and experimental level. In particular, the following qualities and skills will be highly valued, if not required: * Solid bases in maths and/or physics; * Previous experience in experimental neuroscience; * Programming experience (Python or similar coding language); * Experience in machine learning or data mining is a plus; * Good English reading/speaking skills. How to apply ============ Please send your application (CV, letter of motivation, and the names and email addresses of one or two persons who can provide recommendation letters) to Dr. Nicolas Rougier (nicolas.rougier(a)inria.fr) and Arthur Leblois (arthur.leblois(a)u-bordeaux.fr) before the 15/08/2020. Proposed research ================= Temporally precise movement patterns underlie many motor skills and innate actions, yet the origin of temporal control in motor behaviors remains unclear. While cortical motor regions traditionally have been viewed as encoding features of motor gestures, these models do not address how sequences of motor gestures are produced or appropriately timed. Recently, a number of studies have suggested that, beyond just representing features of motor output, motor regions may have intrinsic oscillatory dynamics or sequential dynamics to act as their own pattern generators. However, in the order of milliseconds, the neural and anatomical correlates of time processing are still largely unknown because the dominant model, which is based on internal clock fails at giving account on experimental data. Understanding the neural dynamics underlying the acquisition and performance of complex sensorimotor tasks has been hindered by the complexity of the underlying brain networks in common animal models used in neuroscience (e.g. rodents or primates). In particular, the complex interactions between cortical areas (primary and secondary motor cortex in rodents, motor, premotor and supplementary motor areas in primates) related to many different sensorimotor associations and motor skills is daunting. Conversely, in birds, the sensorimotor skill of song production and its learning has a dedicated set of interconnected brain nuclei known as the “song system”, making them an outstanding model to study the neural mechanisms of vocal learning and more generally, of sensorimotor learning. Songbirds indeed rely on learned vocalizations to communicate during courtship or aggressive behaviours. Just as speech learning in humans, vocal learning in young birds requires the coordination of vocal muscles to reproduce previously experienced adult vocalizations. Song learning is also limited to a critical period during development and heavily relies on auditory feedback. The proposed research lies at the interface of neurophysiology, cognitive science, applied mathematics, and theoretical physics. The concepts and methods that will be used will draw on single neuron physiology, electrophysiological studies in behaving animals, statistical mechanics, dynamical system theory, and stochastic differential equations. To this end, we will combine a theoretical approach (development of a mathematical model of the timing system) and an experimental one (chronic neural recording in awake birds, behavioural manipulations). Therefore, a collaboration with a team of physiologists at the Institute of Neurodegenerative Diseases, and in particular with Arthur Leblois who has a long-established expertise in the neural mechanisms underlying vocal learning in songbirds. The model will be designed under the supervision of Nicolas Rougier who has extensive experience in computational modelling. Predictions of the model will then be tested experimentally by measuring neuronal activity in the brain areas controlling song timing in songbirds under the supervision of Arthur Leblois. Chronic electrophysiological recordings in singing birds are routinely performed in the lab of Arthur Leblois, and will be implemented in a protocol allowing the induction of plasticity in the duration of song syllables in young adult birds over short periods of time.

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