- Comp-neuro - lists.cnsorg.org

(on behalf of Loren Frank) faculty position @ UCSF
by Peter Dayan 29 Sep '20

29 Sep '20

The Department of Physiology at UCSF is seeking a visionary neuroscientist to join our vibrant and collaborative discovery research community. This open-rank, tenure-track faculty position is part of a multi-year UCSF institutional initiative that began in 2018 to foster equity and inclusion in biomedical research and to promote the success of our diverse student population. Since launching this effort, UCSF has tripled the number of underrepresented faculty in our basic sciences departments and this critical mass will continue to grow. Candidates are expected to hold a Ph.D. and/or M.D., to have demonstrated significant research accomplishment and potential, and to be committed to the mentorship of students, with a particular emphasis on candidates with demonstrated success mentoring students from groups that are historically underrepresented in biomedical science. We encourage outstanding candidates who are early in their postdoctoral research training to apply, even if their main findings are not yet published. The successful candidate will be expected to establish a dynamic and interactive research program focused in the field of integrative neuroscience, which could include molecular, genetic, cellular, systems, behavioral, computational, and engineering approaches. The candidate would become a member of the Kavli Institute for Fundamental Neuroscience, the Center for Integrative Neuroscience, and the Weill Institute for Neuroscience at UCSF. The candidate would be expected to join the UCSF Neuroscience Graduate Program and, if so desired, one or more of our other top-ranked interdisciplinary graduate programs (see https://graduate.ucsf.edu/list-programs) The candidate, like all faculty at UCSF, will also be expected to contribute to graduate teaching, to be a leader in inclusive mentoring practices, and to participate in activities that promote equity and inclusion at our institution and in the broader scientific community. Service and teaching expectations are comparable to those of any other UCSF tenure-track faculty position. Faculty appointment will be made at a professorial rank commensurate with current academic standing. UCSF offers competitive salaries, research set-up funds, and recruitment allowances, and has numerous opportunities for faculty development and further training in mentorship. Applications must be submitted online and include the following documents in a single PDF: (1) cover letter briefly describing how the candidate fits the position; (2) curriculum vitae; (3) 1-page summary of research accomplishments demonstrating the candidate’s scientific leadership through their contribution to their project(s) and describing the potential impact of their work on the field of neuroscience; (4) 2-page description of future research plans that includes both high risk / high reward projects and an NIH-fundable program; and 5) a statement of personal experiences with, and contributions to, issues related to social and racial justice, equity, diversity, and inclusion, with particular attention to demonstrated success with formal and informal mentoring of individuals from historically underrepresented groups. We encourage candidates to describe specific mentoring strategies to support the success of all trainees in their research group. Copies of major publications that demonstrate the candidate’s ability to carry out creative and impactful work should be included. Applicants should request three to five letters of recommendation describing how the candidate meets the criteria in this job description. We encourage recommenders to provide explicit examples to illustrate their statements. We expect candidates to provide a letter from their postdoctoral and graduate advisors but will consider candidates who can provide justifications when these will be lacking. Review will begin on December 1, 2020 and continue until the position is filled. Please direct inquiries about the position and suggestions of potential candidates to Dr. Loren Frank (loren(a)phy.ucsf.edu) As an institution that values diversity, UC San Francisco especially encourages application from historically excluded groups, including but not limited to racially underrepresented individuals, women, and individuals with a commitment to mentoring historically excluded groups in the sciences. UC San Francisco seeks candidates whose experience, teaching, research, or community service that has prepared them to contribute to our commitment to diversity and excellence. The University of California is an Equal Opportunity/Affirmative Action Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, age or protected veteran status. Please apply online at https://aprecruit.ucsf.edu/JPF03083.

1 0

postdoc/PhD students needed
by Alexey Kuznetsov 28 Sep '20

28 Sep '20

*POSTDOCTORAL POSITION* *Indianapolis, Indiana, United States* A postdoctoral position and/or PhD student positions are available for a cutting-edge project on computational modeling of habit formation. The project takes place in the excellent collaborative environment of the Indiana Alcohol Research Center and studies the influence of alcohol on habits. The post-doc will develop a model of the cortico-striatal brain circuitry affected by alcohol. The post-doc will work with Prof. Kuznetsov (Mathematics Dept. IUPUI) and collaborate with experimentalists Prof. Atwood (IUSM) and Prof. Lapish (Psycology Dept. IUPUI). The position is available beginning December 2020 for one year. The continuation is contingent upon the availability of funds. *Qualifications*: Applicants should have a Ph.D. in Mathematics, Physics, or a related field, a background in Dynamical Systems, programming experience and working knowledge in Computational Neuroscience. Experience in modeling the basal ganglia is desirable. *How to Apply:* Send your CV, list of publications, research statement, and contact information for three references to Prof. Alexey Kuznetsov via e-mail: askuznet(a)iupui.edu. IUPUI is an Equal Opportunity/Affirmative Action Institution. Individuals who require a reasonable accommodation in order to participate in the application process must notify Cindy Ritchie at 402 N. Blackford Street, LD 270, Indianapolis, Indiana 46202 or call (317) 274-6920, a reasonable time in advance. IUPUI strongly encourages applications from women and underrepresented minorities. Additional information about IUPUI and the Department is available at www.iupui.edu and www.math.iupui.edu. -- Alexey Kuznetsov Associate Professor Dept. of Mathematical Sciences, IUPUI Science Building, LD 270, 402 N. Blackford St., Indianapolis, IN

1 0

Postdoctoral position at BU (Nancy Kopell) and MIT (Emery Brown)
by McCarthy, Michelle M 28 Sep '20

28 Sep '20

Dear Comp-Neuro Community, The Kopell lab at Boston University has an open position (2 years with the possibility of renewal) for a postdoctoral associate to work on computational models concerning mechanisms of anesthesia, with experimental work to be done in the labs of Emery Brown, Earl Miller and others. The models are physiologically detailed (Hodgkin-Huxley based), linking anesthetic-mediated changes in physiology to changes in brain rhythms and their coordination both locally and across the brain; the models further link the brain rhythms to changes in consciousness. The work is relevant to sleep and brain disorders. Programming proficiency and modeling experience is necessary and some neuroscience training is desirable. Please send inquiries and applications to Xiaoshi Shi (xiaoshi(a)bu.edu<mailto:xiaoshi@bu.edu>) and nk(a)bu.edu<mailto:nk@bu.edu>. Nancy Kopell Department of Mathematics and Statistics Boston University, Boston MA 02215

1 0

Two Cardiac Simulation/Computational Neuroscience postdoc computer modeling positions are available for development of a novel ICNS (intrinsic cardiac nervous system) simulation project.
by Salvador Dura 28 Sep '20

28 Sep '20

Our new NIH SPARC Initiative ICNS project aims to build and establish a new model of RAGP (right atrial ganglionic plexus) The work is being done as a collaboration between SUNY Downstate (Brooklyn, NY), and Jefferson University (Philadelphia, CT) under the auspices of a 2-year NIH SPARC Initiative grant. The two new postdocs will work closely together - one focusing primarily on cell-level modeling and the other primarily on network but with both expected to work in both areas. Candidates should have a strong background in computer programming, with demonstrated proficiency in Python. Strong interest, though not necessarily research experie nce, in neuroscience is a must. Some experience with NEURON and NetPyNE is desirable. Job Types: Full-time or Contract contact: bill.lytton(a)downstate.edu<mailto:bill.lytton@downstate.edu> -- William W. Lytton, MD SUNY Distinguished Professor Downstate Medical Center, Brooklyn, NY bill.lytton(a)downstate.edu; http://neurosimlab.com ________________________________________________________________

1 0

postdocs with Peter Dayan in Tübingen
by Peter Dayan 28 Sep '20

28 Sep '20

Postdoc(s) in Neural Reinforcement Learning / Computational Psychiatry (m/f/d) 100% Peter Dayan is looking to hire one or more postdocs (100%) to work in the areas of neural reinforcement learning, computational neuromodulation, and computational psychiatry. These positions will start in the Faculty of Science, Department of Computer Science, University of Tübingen, as part of an Alexander-von-Humboldt Professorship award. There are also targeted positions on the computational anatomy of cortico-striatal connections (funded by a collaborative NIH grant with Professor Suzanne Haber) and with the International Brain Lab (a large collaboration with 20 other investigators, funded by the Simons Foundation). Peter Dayan has an affiliation with the University of Tübingen and the Max Planck Institute for Biological Cybernetics and collaboration is expected. The salary will be paid in accordance with the collective agreement for the public sector (salary at E13 TV-L, commensurate to experience and qualifications). The positions are available immediately, and are initially limited to two years (with the possibility of extension). Please direct scientific inquiries to dayan(a)tue.mpg.de and administrative inquiries to susan.fischer(a)tue.mpg.de. Responsibilities include: • Planning and carrying out research projects, for instance building theories and computational models of data from human and animal experiments, conducting experiments, analysing behavioural and neural data, writing and editing scientific papers/reports. • Helping to mentor and supervise student projects. • Participating in scientific conferences. • Helping to organize and conduct collaborations in Tübingen as well as nationally and internationally • Helping with building and running an effective academic lab environment at the intersection between the Max Planck Institute for Biological Cybernetics and the science and medical faculties at the University of Tübingen. The successful candidate(s) should have a PhD in computational neuroscience or related fields. Proficiency in a high level mathematical or statistically-oriented programming language such as python, R, Julia or matlab, and intimate familiarity with advanced data analysis are essential. The candidate(s) should be able to work independently and troubleshoot and should show good capacity and value for teamwork and communication skills. The University of Tübingen is one of the Excellence Universities in Germany. It is home to a vibrant research community, with very strong research activity in Neuroscience and Clinical Psychology / Psychiatry as well as Artificial Intelligence and Machine Learning. We offer an open research culture, where original thinking and academic merit are encouraged and nurtured, and encourage applications from all nationalities, backgrounds, and genders. The University of Tübingen is dedicated to increase the percentage of female employees in the field of science. Therefore, female candidates are strongly encouraged to apply. Applications should include a CV, a list of publications, summaries of scientific achievements and research plans, the position for which the application is intended, and the names and contact details of three referees. Applications should be sent in a single PDF to: susan.fischer(a)tue.mpg.de Applications arriving before June 30th 2020 will receive full consideration.

2 2

Join us at the NMC 3.0 conference, Oct 26-30, submissions open now
by Brad Wyble 27 Sep '20

27 Sep '20

Dear Neuroscience Community, We are excited to announce the launch of Neuromatch Conference (Oct 26-30). The Neuromatch team has been working hard to bring a virtual conference that accepts submissions from all areas of neuroscience, and where all relevant submissions are accepted as a talk! Our goal with this conference is to provide a place where neuroscientists from all over the world get to share research ideas and come together as a community! We’re working hard to make it the most inclusive neuroscience meeting that has ever existed. The deadline for submissions is October 2, 2020, so we encourage you to get your abstracts ready now! There is a $25 registration fee but this is waivable (no validation required) for anyone who cannot pay to attend for any reason. Please view our website for more information regarding submission and registration: neuromatch.io <http://neuromatch.io/>j The conference will be organized by themes, tailored to fit your area of research best. These themes will be: Theme A: Developmental Disorders and Injury Theme B: Excitability, Synapses, and Glia Theme C: Sensory & Motor Systems, and Physiology & Behavior Theme D: Cognition, Motivation and Emotion Theme E: Computation and Techniques Theme F: History, Education, and Society We developed algorithms that will allow us to place you in a virtual room with other scientists and attendees who are interested in similar topics, therefore ensuring an audience that is excited about your talk. The talks will have two formats, and you will be able to choose which one you prefer - Traditional Talk: 12-minute talk plus 3-minute Q&A - Interactive Talk: 5-minute talk plus 10-minute Q&A (this talk is focused on discussion) We hope that you will attend the Neuromatch Conference and consider submitting your abstract for presentation! We would love to hear from you and see everyone’s latest results.. Best wishes, The Neuromatch Team Please follow our social media and visit our website for regular updates @Neuromatch <https://twitter.com/neuromatch?lang=en> @Neuromatch <https://www.instagram.com/neuromatch/> neuromatch.io -- Brad Wyble Associate Professor Psychology Department Penn State University http://wyblelab.com

1 0

2 postdoc positions in computational neuroscience
by Alain Destexhe 27 Sep '20

27 Sep '20

Dear Colleagues, Please pass on these two positions that we have for postdocs in computational neuroscience at the Paris-Saclay Institute of Neuroscience - many thanks. best, Alain ---------------- 2 POSTDOC POSITIONS AVAILABLE Two postdoc positions are available for computational and theoretical studies in the framework of the Human Brain Project. The theoretical work associated to these two postdoctoral positions consists of (1) investigating models and mathematical techniques to model decision making phenomena (in collaboration with Rubem Moreno-Bote in Barcelona), and (2) investigate models of sensory perception, up to consciousness (in collaboration with Fanis Panagiotaropoulos and Stan Dehaene at NeuroSpin). Both postdocs will be supervised by A. Desyexhe and will work in tight collaboration with the European Institute for Theoretical Neuroscience (EITN). DETAILS OF THE FIRST POSTDOC POSITION: We are seeking for a postdoc position in the framework of a project called "COREDEM", and which was recently integrated in the Human Brain Project European flaghsip. COREDEM aims at conceiving decision making models based on electrophysiological recordings in human and monkey, and ultimately test these models on neuromorphic and neuro-robotic applications. The project comprises a significant computational neuroscience component consisting mainly of two laboratories, Alain Destexhe at the CNRS and Paris-Saclay University, and Ruben Moreno-Bote at the UPF in Barcelona. We will consider spiking models that will compare parallel and sequential strategies to decision making, in a way constrained by unit recordings in monkey and human. Mean-field models will be derived from the spiking models, and such mean-field models will be incorporated in large-scale models of interacting brain areas. Both spiking and mean-field models will be integrated in neuromorphic SpiNNaker computers to be simulated in real time, to open the possibility of being used in real-time applications such as neuro-robotics. The postdoc can begin as early as January 2021, and latest on March 2021, and will be for a 2-year period. We expect that candidates have prior experience either in computational neuroscience, or in decision making. The working environment is the Paris-Saclay Institute of Neuroscience (NeuroPSI) of the CNRS, which comprises 22 research labs in experimental and computational neuroscience, mixed in the same environment. The postdoc will thus interact on a daily basis with experimentalists and theoreticians, and regular visits to the experimental labs of COREDEM (Stefano Ferraina from Rome and Tom Theys from Leuven) are planned. The postdoc will also interact strongly with the researchers and staff of Destexhe's lab at NeuroPSI, and will actively participate to the activities of the EITN. DETAILS OF THE SECOND POSTDOC POSITION: We are seeking for a postdoc position in the framework of a project called "BRICON", and which was recently integrated in the Human Brain Project European flaghsip. BRICON aims at investigating mechanisms of sensory perception and consciousness based on a strong interaction between computational models and experiments on human and monkey. The model will consider how the state of the brain interacts with external input and allows neural activity related to external input to propagate (or not) between brain areas. We will constrain the model based on unit recordings obtained in awake monkey collected by the experimental teams (Fanis Panagiotaropoulos and Stanislas Dehaene, NeuroSpin center). Models will start with conventional spiking neural networks, which then will be converted into population models using mean-field techniques. These mean-field model will then form the basis of whole-brain models simulated using The Virtual Brain platform of the HBP. The postdoc can begin as early as January 2021, and latet on June 2021, and will be for a 20 month period. We expect that candidates have prior experience either in computational neuroscience, or in sensory perception. The working environment is the Paris-Saclay Institute of Neuroscience (NeuroPSI) of the CNRS, which comprises 22 research labs in experimental and computational neuroscience, mixed in the same environment. The postdoc will thus interact on a daily basis with experimentalists and theoreticians, and regular visits to the experimental labs of BRICON (Panagiotaropoulos and Dehaene), who are working next-door in the NeuroSpin center. The postdoc will also interact strongly with the researchers and staff of Destexhe's lab at NeuroPSI, and will actively participate to the activities of the EITN. Interested candidates should send a CV and two recommendation letters at Alain Destexhe or email for more details. alain.destexhe (at) cnrs.fr Alain Destexhe Department of Integrative and Computational Neuroscience (ICN), Paris-Saclay Institute of Neuroscience (NeuroPSI), CNRS, Bat 33, 1 Avenue de la Terrasse, 91198 Gif-sur-Yvette, France.

1 0

Postdoctoral position data/knowledge management for open neuroscience
by Andrew Davison 25 Sep '20

25 Sep '20

Dear colleagues, A postdoctoral position in neuroscience data curation is available within the Neuroinformatics research group of the Paris-Saclay Institute of Neuroscience, led by Dr Andrew Davison. The Human Brain Project is developing an open data repository for neuroscience, following the FAIR principles of Findability, Accessibility, Interoperability, and Reusability. The role of our group is to strongly focus on Reusability, by ensuring that all datasets have high quality, in-depth metadata so that they can be used in model building, model validation, and further analysis, and by providing tools to facilitate data re-use. The position is available immediately, and is funded until 31st March 2023, with future extensions possible. Salary depends on experience, and will be on the standard CNRS research scale. Application is through the CNRS jobs portal: https://emploi.cnrs.fr/Offres/CDD/UMR9197-ANDDAV-006/Default.aspx?lang=EN Informal inquiries may be addressed to Andrew Davison (andrew.davison(a)cnrs.fr) Activities: The successful candidate will be responsible for developing and improving metadata schemas, protocols, and curation workflows for neural activity data (including patch clamp recordings, fluorescence imaging, multi-electrode array recordings and fMRI), and for coordinating the in-depth curation process. The project will involve intensive collaboration with other researchers, curators and software developers within the research group, within the Human Brain Project, and in the wider neuroscience/neuroinformatics communities. Qualifications: Applicants should have a PhD in either neuroscience, computer science, library/information science, or a closely related discipline, or be nearing completion of PhD studies in one of these domains. Experience with experimental methods in neuroscience, semantic web technologies and/or information management approaches will be of particular benefit. Knowledge of computer programming, in particular using the Python language, would also be an advantage. Knowledge of French would be helpful but is not required, as English is the working language of the project. Context: The Paris-Saclay Institute of Neuroscience (https://neuropsi.cnrs.fr/en/institute-home/) is part of the CNRS and Université Paris-Saclay, situated in Gif-sur-Yvette in the Paris region. The Davison team (https://neuropsi.cnrs.fr/en/icn-home/andrew-davison/) develops tools and methods for data sharing, modelling and simulation in neuroscience and brain-inspired computing. This position is funded by the Human Brain Project, an EU Flagship research project, within which more than 100 universities and research institutions collaborate to build a digital research infrastructure for neuroscience, brain-inspired computing and medicine.

1 0

You are invited to DSP online course
by Maryam 24 Sep '20

24 Sep '20

You are invited to “DIGITAL SIGNAL PROCESSING Online Course” Dear researcher; ScienceBeam, which is a forefront technology provider of neuroscience applications, would like to take the opportunity to invite you for 10-sessions “DIGITAL SIGNAL PROCESSING Online Course” that is going to start on October 18,2020. During this course you will learn: • Discrete-time signals and systems • Z-Transform • Transform of continuous-time signals • Transform analysis of linear time invariant systems • Structures for discrete-time systems • Filter design • The discrete Fourier Transform • Computation of the discrete Fourier transform Dr. Luu Gia Thien is an experienced lecturer at Ho Chi Minh City with a Doctor of Philosophy (PhD) focused in Digital signal processing from University of Orléans, France. Registration is open until October 5th. Special discount is considered for students. You won’t want to miss this! Don’t hesitate and register from the link below: https://sciencebeam.com/luu-gia-thien-course/ If you need more information please contact us via Whatsapp or Mail: Whatsapp number: +86 133 8078 1282 Email: workshop(a)sciencebeam.com www.sciencebeam.com

1 0

Software engineer position in human brain project
by Eloy Retamino 23 Sep '20

23 Sep '20

Position: Neuro-robotics Software Engineer Location: Granada, Spain At the Applied Computational Neuroscience (ACN) Group [1], headed by Prof. Eduardo Ros and part of the Computer Architecture and Technology Department at University of Granada, we are engaged in developing robot controllers from models and techniques drawn from neuroscience. Concretely we focus on the exploration of models of the cerebellum and their application in robot control. We are looking for a software engineer to contribute to our tasks in the Human Brain Project (HBP) [2]. HBP is an ambitious, 10 years long research project funded by the European Commision and targeting the exploration of human cognition and its relation to brain structures and activity. The project is developing a series of simulation platforms to facilitate different levels of research in neuroscience. At UGR we participate in the design and development of the Neuro-Robotics Platform (NRP) [3], a research infrastructure which enables embodied simulated experiments in neuroscience in which a spiking neural simulator and a physics simulator run synchronously and communicate in a closed loop fashion. As a member of our group you will contribute to the development of the NRP in the last stage of the HBP. *Your tasks* Contribute to the full cycle development of the NRP. We have some interesting challenges in this last part of the HBP and need a motivated person with experience and passion for software architecture design, physics and neural simulation and robotics. As well, the NRP is built as a production grade software product and we try to take seriously all steps in the development, including unit testing, quality assurance and continuous integration. Depending on your profile you will focus more on particular tasks suiting your experience with the possibility of learning and applying new skills. *Your profile* * Basic skills: - Demonstrable excellent Python and C/C++ programming skills - Experience and participation in collaborative software projects - Experience and passion in robotics, machine learning, neural simulation and/or physics simulation is a big plus - Good spoken and written English skills * Additional skills: - Experience in other programming languages - Version Control software (eg. GIT) - Robotics oriented middlewares and frameworks (eg. ROS) - Experience in Software Architecture design - Experience in Real Time systems design - QA and devops experience *Our offer* - You will participate in an international research project of great relevance and collaborate with top european institutions - Contract of two and a half years with a competitive salary according to experience. Offered brute salary range is 1600 - 2400 €, to be concreted according to relevant experience and skills. - Short trips within Europe as part of the project activities. - Very nice and friendly atmosphere in the group - You will be based on Granada, an exciting and cultural city at the South of Spain half an hour away from mountains, snow and the beach If you are interested in joining our group and HBP send your application to Eloy Retamino (retamino at ugr.es) including your CV and a motivation letter. Please note that only shortlisted candidates will be contacted. Also, applications without a dedicated motivation letter will not be considered. [1] http://acn.ugr.es [2] https://www.humanbrainproject.eu [3] https://neurorobotics.net

1 0