- Comp-neuro - lists.cnsorg.org

Workshop at CNS2023: Neuroscience Gateway Enabling Neuroscience Software Dissemination and Large-Scale Neuronal Modeling and Data Processing on Supercomputers
by Majumdar, Amitava Oct. 31, 2023

Oct. 31, 2023

Please join us at the workshop titled: "Neuroscience Gateway Enabling Neuroscience Software Dissemination and Large-Scale Neuronal Modeling and Data Processing on Supercomputers " at CNS 2023, on July 19th, 2023, in Leipzig, Germany. Speakers include neuroscientists who are using the Neuroscience Gateway as well as Software developers whose software is disseminated via the Neuroscience Gateway. Detailed description of the workshop with list of speakers, title and abstract of the talks are available here: https://www.nsgportal.org/CNS2023NSGWorkshopWebPage.htm Best regards. Workshop Organizers Amit Majumdar, Subha Sivagnanam, Kenneth Yoshimoto, San Diego Supercomputer Center, University of California San Diego Ted Carnevale, Yale University

1 1

SNUFA 2023 program now online
by Friedemann Zenke Oct. 30, 2023

Oct. 30, 2023

Dear all, The SNUFA 2023 workshop program is now online (https://snufa.net/2023/) Like every year, we look forward to two afternoons packed with "spiking networks as universal function approximators." Date and time: Tue, 7 Nov 2023 15:00 - Wed, 8 Nov 2023 18:30 CET Location: online Details: https://snufa.net/2023/ Register (for free) for the online event: https://www.eventbrite.co.uk/e/snufa-2023-tickets-675972952297 Program: November 7th (Times in CET) 14:00 Welcome by the organizers Session 1 (Chair: Charlotte Frenkel) 14:10 Rodolphe Sepulchre, KU Leuven and University of Cambridge (invited) 14:55 Veronika Koren -- Efficient computing of high-dimensional neural representations with biologically plausible E-I spiking networks 15:15 Alessio Quaresima, Hartmut Fitz, Renato Duarte, Peter Hagoort, Karl Magnus Petersson -- Dendrites support formation and reactivation of sequential memories through Hebbian plasticity 15:35 Break (30mins) Session 2 (Chair: Friedemann Zenke) 16:05 Gabriel Ocker, Boston University (invited) 16:50 Maayan Levy & Tim P. Vogels -- Capacity of a spiking network with preserved weight distribution: a game-theory-inspired study 17:10 Flash talks by selected poster presenters 17:30 Break (30mins) 18:00 Poster session (Zoom) November 8th (Times in CET) 14:00 Welcome to day two Session 3 (Chair: Dan Goodman) 14:05 Melika Payvand, INI, Zurich (invited) 14:50 Ilyass Hammouamri -- Learning Delays in Spiking Neural Networks using Dilated Convolutions with Learnable Spacings 15:10 Justus Huebotter, Pablo Lanillos, Serge Thill, Marcel van Gerven -- Training Spiking Neural Networks for Continuous Control with Surrogate Gradients 15:30 Break (30mins) Session 4 (Chair: Emre Neftci) 16:00 Jeff Krichmar, UC Irvine (invited) 16:45 Alexander Efremov, Martino Sorbaro, Pau Vilimelis Aceituno, Benjamin Grewe -- Training fast spiking networks through STDP and control feedback 17:05 Antony W. N’dri, Céline Teulière and Jochen Triesch -- Combining various types of spike timing-dependent plasticity to learn efficient neural codes 17:25 Closing remarks Best wishes from your friendly organizers, Emre Neftci, Charlotte Frenkel, Dan Goodman, and Friedemann Zenke

1 0

Postdoctoral position in computational neuroscience methods (NEURON simulator)
by McDougal, Robert Oct. 27, 2023

Oct. 27, 2023

The McDougal lab at Yale University seeks one or two highly motivated Postdoctoral Associates to advance the frontiers of neuroscience simulation. In addition to papers, etc, this work will be shared with the community in the form of enhancements to the NEURON<https://nrn.readthedocs.io/> simulator. Related lab projects include: combining machine learning and mechanistic modeling, multisimulation (interoperation with other tools), high-resolution simulations of subcellular chemical dynamics, and algorithm development (GPUs, initialization, performance enhancements). The Postdoctoral Associate will lead one or more of these projects and will present this work at conferences, in publications, and in the form of open-source software. Mentorship and career development opportunities will be tailored to the Postdoctoral Associate’s interests. Applicants should hold or be about to complete a PhD in a quantitative field (e.g., mathematics, computer science), neuroscience, or a related field. Strong programming skills in Python and C++ are essential, as is scientific excellence as demonstrated through publication history. Experience with the NEURON<https://nrn.readthedocs.io/> simulator, in machine learning, numerical methods, and/or GPU computing is desirable, but not required. The successful candidate will join the McDougal lab (Biostatistics/Health Informatics, Computational Biology and Bioinformatics, Wu Tsai Institute, Biomedical Informatics and Data Science). We are major contributors to the development of the NEURON simulator and run the ModelDB<https://modeldb.science/> model discovery platform. We additionally have a wide-range of collaborations at Yale and beyond, applying informatics methods to solve biomedical challenges. Please apply online: http://apply.interfolio.com/135170<https://apply.interfolio.com/135170>. Interested individuals should submit a CV, cover letter, and contact information for three professional references. Review of applications will begin immediately and will continue until the position is filled. Initial appointment is for one year with the possibility of renewal. Questions regarding this position should be directed to Dr. Robert McDougal at: robert.mcdougal(a)yale.edu<mailto:robert.mcdougal@yale.edu> Yale University is an Affirmative Action/Equal Opportunity employer. Yale values diversity among its students, staff, and faculty and strongly welcomes applications from women, persons with disabilities, protected veterans, and underrepresented minorities.

1 0

[Job] Brown University – Tenure-Track Position in Neuroscience
by Theresa Desrochers Oct. 26, 2023

Oct. 26, 2023

Dear colleagues, Please see the below ad for a Tenure Track position in the Department of Neuroscience at Brown University and feel free to distribute. Thank you. Brown University – Tenure-Track Position in Neuroscience The Department of Neuroscience at Brown University invites applications from rising neuroscientists for a tenure-track Assistant Professor position. Applicants should have a Ph.D. and/or M.D., postdoctoral experience, and a record of research excellence. We are particularly interested in candidates who share our commitment to increasing diversity and inclusion in neuroscience. Applicants working in all areas of neuroscience, including non-human primate studies, are encouraged to apply. The successful applicants will establish a vibrant research program and participate in the education of undergraduate, graduate, and/or medical students. The Department (http://neuroscience.brown.edu <http://neuroscience.brown.edu/>) excels in research and teaching across the full spectrum of contemporary neuroscience through its shared values: innovation, collaboration, equity in STEM, and committed mentorship. The department is in the Division of Biology and Medicine (https://biomedical.brown.edu <https://biomedical.brown.edu/>) and affiliated with the Warren Alpert Medical School ( https://medical.brown.edu <https://medical.brown.edu/>) and the Carney Institute for Brain Science (https://www.brown.edu/carney <https://www.brown.edu/carney/>), which fosters interdisciplinary studies of mind and brain across Brown. A list of other faculty searches in brain science at our institution can be found at https://www.brown.edu/carney/open-faculty-searches For full consideration, applications should be submitted by December 1st and should include a cover letter; curriculum vitae; description of research plans (3 pg. max); diversity and inclusion statement (1 pg); teaching statement (1 pg); and 3 publications (with a brief statement regarding significance of the candidate’s contribution to each). Candidates should have three letters of reference submitted before the application deadline. Letters of support should speak to the candidate’s potential as a scholar, colleague, mentor and teacher. Apply at https://apply.interfolio.com/132440. Equal Employment Opportunity Statement As an EEO/AA employer, Brown University provides equal opportunity and prohibits discrimination, harassment and retaliation based upon a person’s race, color, religion, sex, age, national or ethnic origin, disability, veteran status, sexual orientation, gender identity, gender expression, or any other characteristic protected under applicable law, and caste, which is protected by our University policies. ~Theresa

1 0

Faculty position at Washington University in St Louis
by Goodhill, Geoffrey Oct. 26, 2023

Oct. 26, 2023

Assistant Professor Position in Computational Neuroscience The Department of Neuroscience at Washington University School of Medicine (https://neuroscience.wustl.edu<https://neuroscience.wustl.edu/>) is currently recruiting investigators with the passion to create knowledge, pursue bold visions, and challenge canonical thinking as we expand into our new 600,000 sq ft purpose-built neurosciences research building. We are now seeking a tenure-track investigator at the level of Assistant Professor to develop an innovative research program in Theoretical/Computational Neuroscience. Applicants should have a strong background in physics, mathematics, engineering, computer science, or a related field and hold a PhD. The successful candidates will join a thriving theoretical/computational neuroscience community at Washington University, including the new Center for Theoretical and Computational Neuroscience. In addition, the Department also has world-class research strengths in systems, circuits and behavior, cellular and molecular neuroscience using a variety of animal models including worms, flies, zebrafish, rodents and non-human primates. We are particularly interested in outstanding researchers who are both creative and collaborative. The Department’s focus on fundamental neuroscience, outstanding research support facilities, and the depth, breadth and collegiality of our culture provide an exceptional environment to launch your independent research program. To apply, submit an application packet including a cover letter describing your interest in our Department, curriculum vitae, a research statement (of no more than 3 pages) to the Faculty Opportunities Portal and arrange for three confidential letters of recommendation to be sent to neurosearch(a)wustl.edu c/o Professor Linda J. Richards, Head, Department of Neuroscience, Washington University School of Medicine, St. Louis, MO 63110. The review of applications will begin on November 6, 2023. Professor Geoffrey J Goodhill Departments of Developmental Biology and Neuroscience Director, Center for Theoretical and Computational Neuroscience (ctcn.wustl.edu) Affiliate appointments: Physics, Biomedical Engineering, Computer Science and Engineering, and Electrical and Systems Engineering Washington University School of Medicine 660 S. Euclid Avenue St. Louis, MO 63110 g.goodhill(a)wustl.edu https://neuroscience.wustl.edu/people/geoffrey-goodhill-phd

1 0

Apply to the Bertalanffy Doctoral Student Award 2024
by Amira Mouakher Oct. 26, 2023

Oct. 26, 2023

*DOCTORAL STUDENT AWARD* <https://iutdijon.u-bourgogne.fr/ccs-france/doctoral-student-award/>** *@ **FRCCS 2024* <https://iutdijon.u-bourgogne.fr/ccs-france/>** The Bertalanffy Doctoral Student Award is part of CSS FRANCE's <https://www.cssfrance.org/>global initiative to support early career researchers in their quest to advance the frontiers of science across a broad range of disciplines. It is in place to recognize early career contributions and leadership in research in Complex Systems related fields. It is awarded to young researchers enrolled in a Ph.D. program. This competition consists in presenting your research in simple terms in a five minutes video to a lay audience. Your presentation should be clear, concise, and convincing. *Eligibility* * Eligible candidates must: * Be under 30. * Be enrolled in a Ph.D. program in whatever discipline Complex Systems covers. * Commit to presenting their work at the French Regional Conference on Complex Systems <https://iutdijon.u-bourgogne.fr/ccs-france/>FRCCS <https://iutdijon.u-bourgogne.fr/ccs-france/>if awarded * Accept and authorize the use and distribution of videos and photos related to the competition, including on social networks * Have informed their thesis supervisor of their participation in the competition * Present a sufficiently advanced state of the doctoral research project ** *Important dates* ·Application deadline: *March 04, 2024* ·Notification to applicants: *April 02, 2024* *Application Instruction* The application package must contain the following: * A CV of the candidate (maximum two pages) * A summary (maximum two pages) presenting the research work, its context, main contribution, and scientific impact. * A 5 minutes video presentation. *Application Process* Applications are made via a google form on the online portal. <https://docs.google.com/forms/d/e/1FAIpQLSe49vdpumpzjVJJ7_mWgC5zKSLS1AqelD_…> *Note that Google Forms requires you to be signed in to a Google account to upload files and submit your responses. * ** *Selection Process* FRCCS Award Committee will evaluate all qualified candidates and propose the winner tothe Advisory Board of CSS FRANCE, which will make the final decision. *Award Procedure* A prize of 500 euros is awarded to the winner. The award also covers the registration fee of FRCCS <https://iutdijon.u-bourgogne.fr/ccs-france/>2024 to facilitate attendance at the conference. The awardee will be recognized and present his (her) work at FRCCS <https://iutdijon.u-bourgogne.fr/ccs-france/>2024. For more information contact: hocine.cherifi(a)gmail.com <mailto:hocine.cherifi@gmail.com>

1 0

Allen Institute Modeling Software Email List
by Anton Arkhipov Oct. 26, 2023

Oct. 26, 2023

Dear Colleagues, Would you like to know what's new in our modeling work and software modeling tools at the Allen Institute? If yes, please sign up here<https://secure2.convio.net/allins/site/SSurvey?amp;ACTION_REQUIRED=URI_ACTI…> to receive announcements a few times a year. We will be sharing messages about * Latest research on modeling brain circuits at the Allen Institute * New features and capabilities of BMTK<https://alleninstitute.github.io/bmtk/>, SONATA<https://github.com/AllenInstitute/sonata/>, and VND<https://www.ks.uiuc.edu/Research/vnd/> * Information about new job openings and important events at the Allen Institute We look forward to keeping in touch with you! Best regards, Anton. Anton Arkhipov Investigator, Allen Institute antona(a)alleninstitute.org<mailto:antona@alleninstitute.org> alleninstitute.org<https://alleninstitute.org> brain-map.org<https://portal.brain-map.org/>

1 0

Postdoctoral Research Associate Position in Computational Neuroscience (Computational Modelling of Decision Making)
by Wong-Lin, Kongfatt Oct. 25, 2023

Oct. 25, 2023

Applications are invited for an externally funded Postdoctoral Research Associate position at the Intelligent Systems Research Centre (ISRC) in Ulster University, UK. The successful candidate will develop and apply computational modelling, and theoretical and analytical techniques to understand brain and behavioural data across primate species, and to apply biologically based neural network modelling to elucidate mechanisms underlying perceptual decision-making. The duration of the position is 24 months, from January 2024 till end of 2025. The personnel will be based at the ISRC in Ulster University, working with Prof. KongFatt Wong-Lin and his team, while collaborating closely with international collaborators in the USA and the Republic of Ireland, namely, Prof. Michael Shadlen at Columbia University (USA), Prof. Stephan Bickel at Northwell-Hofstra School of Medicine (USA), Prof. Redmond O'Connell at Trinity College Dublin (Ireland), Prof. Simon Kelly at University College Dublin (Ireland), and Prof. S. Shushruth at University of Pittsburgh (USA). The ISRC is dedicated to developing a bio-inspired computational basis for AI to power future cognitive technologies. This is achieved through understanding how the brain works at multiple levels, from cells to cognition and apply that understanding to create models and technologies that solve complex issues that face people and society. All applicants should hold a degree in in Computational Neuroscience, Computational Biology, Neuroscience, Computing, Engineering, Mathematics, Data Science, Physical Sciences, Biology, or a cognate area. Apply online: https://my.corehr.com/pls/coreportal_ulsp/erq_jobspec_version_4.display_for… Closing date for receipt of completed applications: 8th November, 2023. Job Ref: 023762. For any informal enquiries regarding this position, please contact KongFatt Wong-Lin; email: k.wong-lin(a)ulster.ac.uk ; website: https://www.ulster.ac.uk/staff/k-wong-lin This email and any attachments are confidential and intended solely for the use of the addressee and may contain information which is covered by legal, professional or other privilege. If you have received this email in error please notify the system manager at postmaster(a)ulster.ac.uk and delete this email immediately. Any views or opinions expressed are solely those of the author and do not necessarily represent those of Ulster University. The University's computer systems may be monitored and communications carried out on them may be recorded to secure the effective operation of the system and for other lawful purposes. Ulster University does not guarantee that this email or any attachments are free from viruses or 100% secure. Unless expressly stated in the body of a separate attachment, the text of email is not intended to form a binding contract. Correspondence to and from the University may be subject to requests for disclosure by 3rd parties under relevant legislation. The Ulster University was founded by Royal Charter in 1984 and is registered with company number RC000726 and VAT registered number GB672390524.The primary contact address for Ulster University in Northern Ireland is Cromore Road, Coleraine, Co. Londonderry BT52 1SA

1 0

Postdoctoral Fellow Positions at CCN, Flatiron Institute
by Matthew Turner Oct. 25, 2023

Oct. 25, 2023

*Flatiron Research Fellow (Postdoctoral Fellow), NeuroAI and Geometric Data Analysis* *Description* Applications are invited for Flatiron Research Fellowships (FRF) in the NeuroAI and Geometric Data Analysis Group (SueYeon Chung, PI) at the Center for Computational Neuroscience at the Flatiron Institute of the Simons Foundation, whose focus is on understanding computation in the brain and artificial neural networks by: (1) analyzing geometries underlying neural or feature representations, embedding and transferring information, and (2) developing neural network models and learning rules guided by neuroscience. To do this, the group utilizes analytical methods from statistical physics, machine learning theory, and high-dimensional statistics and geometry.The CCN FRF program offers the opportunity for postdoctoral research in areas that have strong synergy with one or more of the existing research groups at CCN or other centers at the Flatiron Institute. In addition to carrying out an independent research program, Flatiron Research Fellows are expected to: disseminate their results through scientific presentations, publications, and software release, collaborate with other members of the CCN or Flatiron Institute, and participate in the scientific life of the CCN and Flatiron Institute by attending seminars, colloquia, and group meetings. Flatiron Research Fellows may have the opportunity to organize workshops and to mentor graduate and undergraduate students. The mission of CCN is to develop theories, models, and computational methods that deepen our knowledge of brain function — both in health and in disease. CCN takes a “systems" neuroscience approach, building models that are motivated by fundamental principles, that are constrained by properties of neural circuits and responses, and that provide insights into perception, cognition and behavior. This cross-disciplinary approach not only leads to the design of new model-driven scientific experiments, but also encapsulates current functional descriptions of the brain that can spur the development of new engineered computational systems, especially in the realm of machine learning. CCN’s current research groups include computational vision <https://www.simonsfoundation.org/flatiron/center-for-computational-neurosci…> (Eero Simoncelli <https://www.simonsfoundation.org/people/eero-p-simoncelli/>, PI), neural circuits and algorithms <https://www.simonsfoundation.org/flatiron/center-for-computational-neurosci…> (Dmitri ‘Mitya’ Chklovskii <https://www.simonsfoundation.org/people/dmitri-mitya-chklovskii/>, PI), neuroAI and geometric data analysis <https://www.simonsfoundation.org/flatiron/center-for-computational-neurosci…> (SueYeon Chung <https://www.simonsfoundation.org/people/sueyeon-chung/>, PI), and statistical analysis of neural data <https://www.simonsfoundation.org/flatiron/center-for-computational-neurosci…> (Alex Williams <https://www.simonsfoundation.org/people/alex-williams/>, PI), and is planning to expand the number of research groups in the near term. Interested candidates should review the CCN public website for specific information on CCN’s research areas. Applicants who are interested in a joint appointment between two CCN research groups should submit the same application to both groups, noting the dual application in their research statement. Please note that Alex William’s statistical analysis of neural data group is not recruiting at CCN in 2023. FRF positions are two-year appointments and are generally renewed for a third year, contingent on performance. FRF receive a research budget and have access to the Flatiron Institute’s powerful scientific computing resources. FRF may be eligible for subsidized housing within walking distance of the CCN. Review of applications for positions starting between July and October 2024 will begin in November 2023. For more information about life at the Flatiron Institute, visit https://www.simonsfoundation.org/flatiron/careers. Qualifications *MINIMUM QUALIFICATIONS* Education PhD in computational neuroscience or a relevant technical field such as electrical engineering, machine learning, statistics, physics, or applied math. Related Skills & Other Requirements - Flexible multi-disciplinary mindset; - Strong interest and experience in the scientific study of the brain; - Demonstrated abilities in analysis, software and algorithm development, modeling and/or scientific simulation; - Ability to do original and outstanding research in neuroscience; - Ability to work well independently as well as in a collaborative team environment. Selection Criteria: Applicants must have a PhD in a related field or expect to receive their PhD before the start of the appointment. Applications will be evaluated based on 1) past research accomplishments 2) proposed research program 3) synergy of applicant’s expertise and research proposal topic with existing CCN staff and research programs. *COMPENSATION AND BENEFITS* The full-time annual compensation for this position is $90,000. In addition to competitive salaries, the Simons Foundation provides employees with an outstanding benefits package. Application Instructions - Required Application Materials - Cover letter (optional); - Curriculum Vitae with bibliography; - Research statement of no more than three pages describing past work and proposed research program. Applicants are encouraged to discuss the broad impact of the past and proposed research on computational neuroscience. Applicants who are interested in a joint appointment between two CCN research groups should submit the same application to both groups, noting the dual application in their research statement. - Three (3) letters of recommendation *For more information and to apply, please visit: https://apply.interfolio.com/134616 <https://apply.interfolio.com/134616>* Cordially, MATTHEW B. TURNER any pronouns Senior Manager for Center Administration | Center for Computational Neuroscience Co-Chair, Flatiron Institute Professional Development Committee Co-Chair, Pride@SF Employee Resource Group Flatiron Institute 917.363.1095 mobile mturner(a)flatironinstitute.org 162 Fifth Avenue, New York, NY 10010 simonsfoundation.org/flatiron <https://www.simonsfoundation.org/flatiron/>

1 0

Postdoc positions in Neuro-AI at the University of Oregon
by James Murray Oct. 25, 2023

Oct. 25, 2023

Postdoc positions are available at the University of Oregon’s NeuroAI Center (ion.uoregon.edu/neuroai<https://urldefense.com/v3/__https://ion.uoregon.edu/neuroai__;!!K-Hz7m0Vt54…>) in the Murray and Mazzucato labs. In our research, we seek to uncover the principles of how the brain performs computations related to sensory perception, decision making, and motor control. While previous experience in computational neuroscience and machine learning are desirable, applicants from other quantitative fields (e.g. math, physics, statistics, computer science) who are eager to learn about neuroscience are highly encouraged to apply as well. Some of the scientific questions that motivate our work are * How do different regions of the brain interact to learn new motor skills? * What are the neural mechanisms underlying optimal performance in complex cognitive tasks? * What are the principles that enable brains and artificial agents to learn efficiently from experience while minimizing forgetting? * How can neural circuits generate the complex dynamics enabling naturalistic animal behavior? Our labs aim at building mechanistic models of brain function grounded in a combination of theoretical approaches, neural network-based simulations, and statistical analysis of experimental data. The candidate will have the opportunity to collaborate with a large network of experimental collaborators at University of Oregon and at other institutions with expertise in sensory processing (visual, auditory, and olfactory), motor control, naturalistic behavior, neural engineering, and brain-computer interfaces. The Oregon NeuroAI Center is part of the Institute of Neuroscience at the University of Oregon (ion.uoregon.edu<https://urldefense.com/v3/__http://https.ion.uoregon.edu__;!!K-Hz7m0Vt54!jj…>), a major hub for systems and theoretical neuroscience research. The successful candidate will also join our International Network for Bio-Inspired Computing (in-bic.org<https://urldefense.com/v3/__http://www.in-bic.org__;!!K-Hz7m0Vt54!jjW_DXqAj…>), a worldwide consortium of NeuroAI groups that provides trainees with an extended network for collaboration, including trainee exchanges, workshops, and schools. The University of Oregon is located in Eugene, Oregon, a vibrant college town in the Pacific Northwest with ample cultural offerings and phenomenal access to outdoor recreation. We offer a competitive salary commensurate with the candidate’s experience, and remote work arrangements may be considered. Our Institute strongly advocates for inclusivity in science, and we encourage applications from underrepresented groups. Required Qualifications Successful candidates will have a PhD in a quantitative field, including physics, neuroscience, mathematics, statistics, computer science, or related fields. Applicants should have a strong quantitative background including at least some coding experience. Application The application can be found here: https://academicjobsonline.org/ajo/jobs/26101<https://urldefense.com/v3/__https://academicjobsonline.org/ajo/jobs/26101__…>. Application reviews will start on December 1st and will continue until the position is filled. Inquiries can be sent to James Murray (jmurray9 at uoregon dot edu) or Luca Mazzucato (lmazzuca at uoregon dot edu). Applications should include a CV, two-page statement of research interests, a one-page DEI statement (guidelines<https://urldefense.com/v3/__https://provost.uoregon.edu/sites/provost1.uore…>), and contact information for three letters of reference. -- James M Murray Assistant Professor Depts. of Biology and Mathematics and Institute of Neuroscience University of Oregon murraylab.uoregon.edu<https://urldefense.com/v3/__https://murraylab.uoregon.edu__;!!K-Hz7m0Vt54!j…>

1 0