- Comp-neuro - lists.cnsorg.org

Modelling with NeuroML: ecosystem updates and pre-print
by Ankur Sinha Dec. 13, 2023

Dec. 13, 2023

Dear all, This is to alert you to the availability of exciting new resources for the model description language NeuroML and a recently posted bioRxiv preprint on the ecosystem of NeuroML-compliant tools for data-driven modelling of neurons and circuits. In the preprint (doi: https://doi.org/10.1101/2023.12.07.570537) we provide a major update on the current scope of the NeuroML standard, the software ecosystem and describe the newly extended online resources for helping researchers incorporate NeuroML into their modelling work. We show how the modular nature and hierarchical structure of NeuroMLv2, combined with the flexibility of coding in Python, has created a powerful "building block" approach for constructing standardised models from scratch. Moreover, we illustrate how the ecosystem of NeuroML compliant tools supports users at all stages of the model development life cycle. This includes automated model validation, advanced analysis, visualisation, and sharing/reuse of models. The paper demonstrates how NeuroML unifies and standardises the diverse approaches to biologically-detailed computational modelling of neural systems, by enabling an ecosystem of interoperable tools that support the FAIR principles and promotes open, transparent and reproducible science. In the newly updated NeuroML online resources (https://docs.neuroml.org) we provide tutorials on how to use NeuroML to build, validate and share standardised models together with extensive documentation on this INCF approved community standard. We hope you find these resources useful for your modelling work. On behalf of the NeuroML community, Ankur Sinha, Padraig Gleeson, and Angus Silver. -- Thanks, Regards, Ankur Sinha (He / Him / His) | https://ankursinha.in Research Fellow at the Silver Lab, University College London | http://silverlab.org/ Free/Open source community volunteer at the NeuroFedora project | https://neuro.fedoraproject.org Time zone: Europe/London

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Seventh Groningen Spring School on Cognitive Modeling
by Jelmer Borst Dec. 13, 2023

Dec. 13, 2023

– ACT-R, Nengo, PRIMs – Date: 8-12 April 2024 Location: Groningen, the Netherlands Fee: € 305 (late fee after March 7 will be € 355) More information and registration: http://www.ai.rug.nl/springschool/ – – – – – – – – – – – – – – – – – – – – Dear colleagues and students, We are excited to announce the seventh Spring School on Cognitive Modeling in Groningen, from 8-12 April 2024! The Spring School will cover three different modeling paradigms: ACT-R, Nengo, and PRIMs. Each of these topics consists of a series of lectures, as well as a number of hands-on exercises (tutorials). Past years have shown that students get most out of the spring school if they really immerse themselves into one modeling paradigm. We therefore recommend you choose one topic for which you will attend both the lectures as well as the tutorials. In addition, you can select a second paradigm, for which you attend the lectures only. To give students a broader picture, there will be multiple guest lectures throughout the week. These lectures will give an introduction to other modeling paradigms, as well as practical research examples to show you what can be done with the modeling paradigms presented! Everyone is encouraged to attend those lectures. To round off the program, there will be a poster session, where students present themselves and their research, as well as a city tour, and our (in)famous spring school dinner. Registration is now open. Please feel free to forward the information to anyone who might be interested in the Spring School, and let us know if you have any questions! We are looking forward to welcoming you (again) in Groningen, The Spring School team springschool(a)rug.nl <mailto:springschool@rug.nl> – – – – – – – – – – – – – – – – – – – – ACT-R Teachers: Jelmer Borst & Stephen Jones (University of Groningen) Website: http://act-r.psy.cmu.edu <http://act-r.psy.cmu.edu/> ACT-R is a high-level cognitive theory and simulation system for developing cognitive models for tasks that vary from simple reaction time experiments to driving a car, learning algebra, and air traffic control. ACT-R can be used to develop process models of a task at a symbolic level. Participants will follow a compressed five-day version of the traditional summer school curriculum. We will also cover the connection between ACT-R and fMRI. Nengo Teacher: Terry Stewart (University of Waterloo) Website: http://www.nengo.ca <http://www.nengo.ca/> Nengo is a toolkit for converting high-level cognitive theories into low-level spiking neuron implementations. In this way, aspects of model performance such as response accuracy and reaction times emerge as a consequence of neural parameters such as the neurotransmitter time constants. It has been used to model adaptive motor control, visual attention, serial list memory, reinforcement learning, Tower of Hanoi, and fluid intelligence. Participants will learn to construct these kinds of models, starting with generic tasks like representing values and positions, and ending with full production-like systems. There will also be special emphasis on extracting various forms of data out of a model, such that it can be compared to experimental data. PRIMs Teacher: Niels Taatgen (University of Groningen) Website: https://www.ai.rug.nl/~niels/prims/index.html How do people handle and prioritize multiple tasks? How can we learn something in the context of one task, and partially benefit from it in another task? The goal of PRIMs is to cross the artificial boundary that most cognitive architectures have imposed on themselves by studying single tasks. It has mechanisms to model transfer of cognitive skills, and the competition between multiple goals. In the tutorial we will look at how PRIMs can model phenomena of cognitive transfer and cognitive training, and how multiple goals compete for priority in models of distraction.

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ICMNS 2024 deadline extension for contributed talks and posters
by Avitabile, D. (Daniele) Dec. 12, 2023

Dec. 12, 2023

Dear All, We remind you of the open call for contributed talks and posters for ICMNS 2024, which will take place at University College Dublin on the 12th-14th June 2024. In addition to plenary and invited talks, the conference will feature contributed talks and a poster session. Following a review process, presenters of contributed talks may be offered a slot in one of our plenary sessions. We have extended the deadline for submitting contributed talks and posters to the 16th of January 2024 at 23:59 (GMT), so that there will be one last chance to collect contributions after the Christmas break. This will be the final deadline for submissions. You can submit your contribution and read more about the conference at our website danieleavitabile.com/icmns24 We look forward to receiving your contributions. Daniele Avitabile, Áine Byrne, and Jonathan Rubin

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A podcast about how I introduced neural networks in 1957 and discovered how resonant brain states may become conscious
by Grossberg, Stephen Dec. 12, 2023

Dec. 12, 2023

Dear Comp-neuro colleagues, I have attached below the title and url of a two-hour video podcast about my life and work developing neural network models of how our brains make our minds, and applying them to solve large-scale problems in engineering, technology, and AI. The podcast discussion is wide-ranging, including: How I came to introduce neural networks in 1957 as a college Freshman, and How I came to model how resonant brain processes embody conscious awareness. The title of the podcast is: How Do Resonant Brains Make Conscious Minds? Towards Solving the Hard Problem of Consciousness https://lnkd.in/eS8n-ZTj This is a discussion with Tevin Naidu from his series Mind-Body Solution. The podcast was motivated by my Magnum Opus CONSCIOUS MIND, RESONANT BRAIN: HOW EACH BRAIN MAKES A MIND https://lnkd.in/eiJh4Ti that I wrote to be self-contained and non-technical for a general audience. Best, Steve Grossberg Stephen Grossberg Wang Professor of Cognitive and Neural Systems Director, Center for Adaptive Systems Emeritus Professor of Mathematics & Statistics, Psychological & Brain Sciences, and Biomedical Engineering Boston University sites.bu.edu/steveg/ steve(a)bu.edu<mailto:steve@bu.edu> http://en.wikipedia.org/wiki/Stephen_Grossberg http://scholar.google.com/citations?user=3BIV70wAAAAJ&hl=en https://sites.bu.edu/steveg/files/2021/08/Grossberg-CV-8-14-21.pdf https://youtu.be/9n5AnvFur7I https://www.youtube.com/watch?v=_hBye6JQCh4

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Support the EPSRC/MRC Neurodevelopmental Network Reliability Group!
by Fabrizi, Lorenzo Dec. 12, 2023

Dec. 12, 2023

Hi all, RESPECT 4 Neurodevelopment<https://respect4neurodevelopment.com/> is an EPSRC/ MRC funded UKRI-Network Plus; which aims to make transformative changes in developing child-specific neurotechnologies for the clinic and home. One of the missions of the network is to understand issues around Reliability in EEG, fNIRS and MRI in Neurodevelopment. 🔬🧠👶 We need your support in writing a White Paper that discusses the reliability of neurotech by completing a 10 min questionnaire about what reliability means to you and the procedures you follow in your lab or company to assess reliability. Please find the questionnaire here<https://forms.gle/y9oxZ7RS5t6JYpK37> and complete it before 15th of January 2024. Many thanks from the EPSRC/MRC Neurodevelopmental Network Reliability Group. Lorenzo Fabrizi, PhD Associate Professor Medical Research Foundation Fellow Neuroscience, Physiology and Pharmacology Department Room G17A, Medawar Building Bloomsbury Campus University College London Gower St, London WC1E 6BT office tel. 02031081888 (int. 51888)

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Postdoctoral position in the Rich Lab and the University of Connecticut
by Scott Rich Dec. 11, 2023

Dec. 11, 2023

Dear Comp-Neuro Listserv, The official posting for the open Postdoctoral position in my lab, opening in January at the University of Connecticut's Department of Physiology and Neurobiology, is available here: https://jobs.hr.uconn.edu/cw/en-us/job/498073/postdoctoral-research-associa… <https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fjobs.hr.u…> I encourage anyone interested in pursuing postdoctoral research in computational neuroscience, particularly those interested in using biophysically motivated models to understand the role of heterogeneity in driving physiologically-relevant brain function, to apply. If you are interested in joining the lab as a graduate student, you can still apply to the department following the guidelines outlined here: https://pnb.uconn.edu/graduate/graduate-application-and-admission-informati… In addition, if you're applying to either position, please also fill out this Google Form so that I know to keep an eye out for your application: https://forms.gle/r4m5VNZQJDAjKgcM8 Please feel free to reach out to me with any questions you might have. Sincerely, Scott Rich

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ICANN 2024 - Call for Workshops and Special Sessions
by Sebastian Otte Dec. 11, 2023

Dec. 11, 2023

Call for Workshops and Special Sessions The International Conference on Artificial Neural Networks (ICANN) is the annual flagship conference of the European Neural Network Society (ENNS). In 2024, the ICANN will take place in Lugano, Switzerland. Conference Dates: September 17 to September 20, 2024 Conference Venue: Campus of the University of Southern Switzerland and the University of Applied Sciences and Arts of Southern Switzerland, Via la Santa 1, 6962 Lugano-Viganello, Switzerland. Conference Webpage: https://icann2024.org We invite prospective organizers to submit Workshop and Special Session Proposals. Special Sessions focus on specific topics within the general scope of the conference. Their goal is to provide a forum for focalized discussions on state-of-the-art research in their specific field. Special Sessions have the same duration as a standard session (2 hours), and submissions should follow the same format as for the main conference track (12-15 pages, Springer format, peer reviewed). The internal organization of Special Sessions is up to the organizer (for example, it is possible to reserve more time for some distinguished speaker, or for a demonstration). Workshops have a broader focus than Special Sessions; they have the goal to showcase specific methods and applications to the general conference audience. While workshops normally feature peer-reviewed submissions, this is not obligatory for invited speaker(s). They can usually take up the entire conference day (or even more) and may feature a free format with presentations, panel discussions, brainstorming, etc. The program chairs are happy to discuss specific arrangements with prospective organizers. The organizer has the tasks of helping to publicize the special session/workshop, providing a list of scientists who would be invited to submit articles, organizing the review process (if appropriate), and finally chairing the session. Please send a short description of your proposal, including the responsible chairs, to program-committee(a)icann2024.org. We will then get in touch with you. For each accepted Workshop, we offer one free conference registration. Deadline for Workshop and Special Session Proposals: February 1, 2024. Direct all questions to program-committee(a)icann2024.org. Thanks for your contribution! Link to this call: https://e-nns.org/icann2024/call-for-workshops-and-special-sessions/

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Undergraduate Volunteers and Travel Prize for Mathematics of Neuroscience and AI Convention, Rome, 28-31st May 2024
by Battleday, Ruairidh Dec. 11, 2023

Dec. 11, 2023

The organizing committee is recruiting two volunteers to help prepare for and run the 5th International Convention on the Mathematics of Neuroscience and AI: www.neuromonster.org This year's conference is to be held in Rome, 28th-31st May 2024. We are seeking two undergraduate students at British universities to help with conference organization. Applications will be reviewed on a rolling basis, and a response sent as soon as a decision is made, via the following link: https://forms.gle/RETRucgZEYPRnfoc8 *Position 1: website and registrations (30 hours before and during the conference)* This position will involve keeping the website updated with speaker information (via Squarespace), ensuring speakers complete registration, and ensuring people that register online complete the full registration process. It will also involve helping the Italian staff with the registration desk on the first day. *Position 2: AV equipment, zoom, and processing recordings (30 hours during and after the conference)* This position will involve making sure the virtual components of the conference are running smoothly, and processing talk recordings after the conference. *Benefits* This is a great opportunity for anyone interested in cognitive science, computational neuroscience, or machine learning and artificial intelligence to become involved in a major international event! Through it, you will meet established and rising stars in the field, gain an appreciation of what research at a graduate level and beyond is like, and understand the workings of a nonprofit and conference. Our previous iterations have been called "the best conference ever" by many attendees! *Requirements* We are looking for two undergraduate students reading for degrees related to cognitive science, computational neuroscience, or machine learning and artificial intelligence at *British Higher Education *universities and / or institutions. Most of all, we are looking for enthusiastic young scientists interested in careers in these three fields! You may apply with a friend or colleague and split the two positions. Conversational-level Italian is preferred, but not essential. *Remuneration* We will cover flights to Rome for the conference from the UK, as well as accommodation and a modest food and drink budget. Any further questions, please feel free to email battleday(a)thinkingaboutthinking.org. -- Dr Ruairidh McLennan Battleday BMBCh (Oxon) PhD Executive Director Thinking About Thinking Postdoctoral Research Fellow Center for Brain Science, Harvard University Center for Brains, Minds, and Machines, MIT

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DENDRITES 2024 call for abstracts
by Julijana Gjorgjieva Dec. 10, 2023

Dec. 10, 2023

DENDRITES 2024 EMBO Workshop on Dendritic Anatomy, Molecules and Function 21-24 May 2024, Chania, Crete, GREECE https://meetings.embo.org/event/24-dendrites Dear Colleagues, We are pleased to announce the solicitation of abstracts for short oral or poster presentations at the EMBO Workshop on DENDRITES 2024, which will take place in Chania, Crete on 21-24 May 2024. This is the 5th of a very successful series of meetings on the island of Crete that is dedicated to dendrites. The meeting will bring together scientific leaders from around the globe to present their theoretical and experimental work on dendrites. The meeting program is designed to facilitate discussions of new ideas and discoveries, in a relaxed atmosphere that emphasizes interaction. Please register and submit your abstract online at: https://meetings.embo.org/event/24-dendrites No payment is required for abstract submission. Submissions of abstracts are due by February 9th, 2024. Notifications will be provided by March 1st, 2024 Registration payment due by April 15th, 2024 Potential attendees are strongly encouraged to submit an abstract as presenters will have registration priority. For more information about the conference, please refer to our web site or send email to info(a)mitos.com.gr We look forward to seeing you in person at DENDRITES 2024! The organizers, Julijana Gjorgjieva, Mark Harnett, Lucy Palmer and Yiota Poirazi ----------------------------------------- Julijana Gjorgjieva, PhD Professor of Computational Neuroscience Technical University of Munich School of Life Sciences Maximus-von-Imhof-Forum 3 85354 Freising, Germany office: +49 8161 71 2709 https://www.mls.ls.tum.de/compneuro/

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Invitation to participate in a study on scientific reasoning
by Dubova, Marina Aleksandrovna Dec. 7, 2023

Dec. 7, 2023

Dear colleague, We are conducting an online study to explore how scientists, like yourself, learn about the world. We are inviting you to participate in the experiment. Study Details The study takes roughly 30 minutes, during which you will be exploring the functions of a fictional brain area by conducting scientific experiments. Your objective will be to learn the link between this neural area and behavioral outcomes. Eligibility 18+ years old Current PhD student or higher in Neuroscience or a similar field (including postdocs, junior & senior faculty, research scientists, etc) Residing in the US Compensation You will receive $10 reimbursement through Paypal, Venmo, or a gift card of your choice. If you are interested in participating in the study, please email Marina Dubova at mdubova(a)iu.edu<mailto:mdubova@iu.edu> to sign up. Thank you for considering participating in this study. Your participation could help shape our understanding of how scientists learn about the world and how this learning could be improved. Best, Marina Dubova and Robert Goldstone Indiana University Cognitive Science Program

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