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2 PhD positions in the European Training Network project ENTRAIN-VISION in Prague
by Jan Antolik March 3, 2020

March 3, 2020

2 PhD positions are available in the European Training Network project ENTRAIN-VISION <http://www.entrain-vision.eu/> in Prague, within the Marie Sklodowska-Curie ETN - Early Stage Researcher (PhD) program. Blindness is the most feared handicap leading to the greatest exclusion from society by reducing patient autonomy and mobility. Clinical trials have demonstrated the possibility to regain some useful vision with retinal prostheses in patients having lost photoreceptors. New approaches are entering into clinical trials such as photovoltaic implants, optogenetic therapy and even cortical prostheses for patients having lost eye to brain connection. In the ENTRAIN-VISION <http://www.entrain-vision.eu/> project, the Early Stage Researchers (ESRs) will work on these innovative technologies for restoring vision in blind patients. Their training in academic institutes or industry will be completed by several secondments, including at least one at an industry partner. In addition, several summer schools will address scientific subjects on vision restoration and transferable skills in technology transfer, clinical trials, start-up creation, and communication to the media. At the Computational Systems Neuroscience Group (CSNG <http://antolik.net/>) at Charles University in Prague, we will address the problem of how to encode visual stimulus, such that the stimulation of the targeted visual processing stage (retina, thalamus or cortex) leads to perception of the given stimulus by the implanted subject. We will address this question via computational means, relying on both large-scale recurrent spiking neural network models of early visual system <https://www.biorxiv.org/content/biorxiv/early/2019/04/18/610378.full.pdf>, as well as novel <https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi…>deep neural network <https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi…> machine learning techniques. This way, we will inform the future design of the visual prosthetic devices and contribute to the information processing software that will run on the implanted hardware. What we offer: - Obtain a PhD from Charles University <https://cuni.cz/uken-1.html> in Prague. - Internships at technological innovators Innovatric <http://innovatrics.com/> and GoodAI <https://goodai.com/>, and 3 month secondment at another ENTRAIN-VISION <http://www.entrain-vision.eu/> partner (see attachments for full list). - Work in close collaboration with the leading vision restoration lab of Dr. Serge Picaud <http://www.institut-vision.org/en/retinal-information-processing-pharmacolo…> at the Institute de la Vision <http://www.institut-vision.org/>, Paris. - A full-time 3-year paid contract, starting September 2020. Main tasks and responsibilities: - Building and testing large-scale recurrent spiking neural network models of early visual system. - Extending these simulations with model of the prosthetic system, and calibrating the resulting simulation stack against physiological data provided by the project partners. - Developing encoding schemes for visual stimuli that will provide both accurate and efficient stimulation of the neural visual substrate. - Evaluating candidate encoding schemes in the simulation environment. - Finding efficient implementations of the selected encoding schemes in the low-powered prosthetic hardware. Skills and qualifications: - Bachelor (BSc) and Master (MSc) in Physics/Mathematics/Engineer/Neuroscience/Computer Science or related fields - Programming skills: Python. - Willing to learn new skills and work in teams - High level of English proficiency - Prior experience in neural modelling a plus For further information on all project partners, *how to apply* and *deadlines* please see attached documents. Ján Antolík <http://antolik.net/>, PhD -- Associate Researcher Computational Systems Neuroscience Group Faculty of Mathematics and Physics Charles University in Prague, Czech Republic

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CAMP at Bangalore 2020 Course application deadline extended
by U.S.Bhalla March 3, 2020

March 3, 2020

Dear Colleagues, The deadline to apply for CAMP at Bangalore 2020 has been extended till *March 10*. The course runs from 29 June 2020 to 14 July 2020. CAMP (Computational Approaches to Memory and Plasticity at NCBS, Bangalore) is a 16-day summer school where students will be trained in theoretical and computational modeling, pertaining to memory and plasticity in the brain, spanning different scales of space, time and complexity. This flavor of CAMP will focus on — *Hippocampus beyond Space, and Dimensionality & Manifolds*. The course will have lectures, hands-on tutorials, and project work to launch students into the exciting field of computational neuroscience. The course is supported by the Simons Foundation. Students worldwide are encouraged to apply. Accommodation and food will be free for the selected students. There is no registration fee. Students are advised to obtain independent travel grants. Application deadline: 10 March 2020, 11:59 PM IST Referee letters must reach by 12 March 2020, 11:59 PM IST *Speakers:* Aaron Batista, University of Pittsburgh, USA Alessandro Treves, SISSA, Italy Collins Assisi, IISER Pune, India Kishore Kuchibhotla, Johns Hopkins University, USA Marianne Fyhn, University of Oslo, Norway Sachin Deshmukh, IISc Bangalore, India Srdjan Ostojic, Ecole normale supérieure, France Suhita Nadkarni, IISER Pune, India Taro Toyoijumi, RIKEN, Japan Torkel Hafting, University of Oslo, Norway Visit the course website *http://camp.ncbs.res.in/* for more details about the course and previous CAMPs. Course Organizers: Arvind Kumar (KTH Stockholm) Rishikesh Narayanan (Indian Institute of Science, Bangalore) Upinder Bhalla (National Centre for Biological Sciences, Bangalore) Best, Organizing Committee CAMP 2020

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Special Issue on “Computational Models of M/EEG and Their Applications"
by Benedetta Franceschiello March 3, 2020

March 3, 2020

Dear colleagues, The call for papers for our special in Brain Topography on “Computational Models of M/EEG and Their Applications" - is out! The full call can be found here <https://www.springer.com/journal/10548/updates>. Please feel free to distribute this call to colleagues who you think might be interested, and do not hesitate to contact us with any questions. Important dates at a glance: - informal proposal to the guest editors* before *March 31st*, 2020 - manuscript submission from now until *June 15th*, 2020 **katharina.glomb(a)unil.ch <katharina.glomb(a)unil.ch>, benedetta.franceschiello(a)fa2.ch <benedetta.franceschiello(a)fa2.ch> and jlefebv3(a)uOttawa.ca <jlefebv3(a)uOttawa.ca> with “BTOP Special Issue Proposal” as the subject line* A list of topics include the following, though interested authors are encouraged to expand beyond them: *Computational models of M/EEG at the level of single cells and micro-circuits:* models of single-cell or ensemble activity of different types of neurons that are relevant to the analysis and modeling of M/EEG recordings. *Computational models of M/EEG at the level of neural masses and neural fields:* models of population dynamics and how they could determine specific features of the electrical activity recorded by M/EEG *Macroscopic computational models for M/EEG taking into account brain connectivity and/or gradients:* models investigating the contributions of brain connectivity and/or cortical gradients to global activity. *Applications of computational models of M/EEG:* how quantitative and qualitative measures extracted through computational models of M/EEG help to interpret behavioural or perceptual mechanisms, e.g.: brain stimulation, epilepsy, anesthesia, coma and disorders of consciousness, neuropsychiatric disorders, and brain-computer interfaces. Best regards, -- Benedetta Franceschiello, Ph.D. Postdoctoral Fellow Laboratory for Investigative Neurophysiology <https://www.unil.ch/line/en/home.html> UNIL and Department of Radiology RC7, Centre Hospitalier Universitaire Vaudois (CHUV) and Service of Ophthalmology Fondation Asile des Aveugles Tel: +41 787409774 Rue du Bugnon 46, CH-1011 Lausanne https://sites.google.com/view/benedettafranceschiello-phd/

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Job Opening at the Allen Institute for Brain Science: Computational Studies of Cortical Circuits
by Anton Arkhipov March 3, 2020

March 3, 2020

An exciting opportunity to work at the Allen Institute for Brain Science: Scientist I/II - Computational Studies of Cortical Circuits. Apply here: https://alleninstitute.org/what-we-do/brain-science/careers/job-search/ Follow the link above and choose "Scientist I/II - Computational Studies of Cortical Circuits" from the list of available positions. Please feel free to contact me with any questions: antona(a)alleninstitute.org<mailto:antona@alleninstitute.org>. Scientist I/II - Computational Studies of Cortical Circuits The Allen Institute for Brain Science is seeking exceptional candidates for a position of Scientist in our Seattle-based, multidisciplinary organization. The Scientist will join the computational team of Anton Arkhipov and will focus on data analysis and modeling of structure, activity, and computations in mouse cortical circuits. Our computational team collaborates closely with experimentalists to build systematic classifications of structure and function of the mouse visual cortex based on high-throughput recordings in vitro (e.g., http://celltypes.brain-map.org and Gouwens et al., Nature Neurosci., 2019) and in vivo (e.g., https://portal.brain-map.org/explore/circuits and Siegle et al., bioRxiv 805010, 2019). Using systematically constructed models of neurons from diverse types (Gouwens et al., Nature Comm., 2018), we are building and simulating data-driven, highly realistic models of the mouse visual cortex (Arkhipov et al., PLOS Comp. Bio., 2018; Billeh et al., Neuron, in press, 2020; https://portal.brain-map.org/explore/models/mv1-all-layers) The team has also developed and disseminated the software enabling such modeling studies (https://alleninstitute.github.io/bmtk/ and https://github.com/AllenInstitute/sonata) Join us to analyze world-class experimental data and build the next generation of brain models. This work will enable mechanistic predictions regarding structure and function of cortical circuits and will drive new experiments. Job Responsibilities: * Collaborate with in-house experimentalists to analyze data from Neuropixels electrophysiology and/or 2-photon calcium imaging in the mouse brain, as well as electron microscopy connectomics. * Use these data to build and simulate models of cortical circuits, in order to study mechanisms connecting circuit structure and function. * Publish/present findings in peer-reviewed journals/scientific conferences. Required Qualifications: * PhD degree in Neuroscience, Physics, Applied Mathematics, or related fields. * Strong publication record. Preferred Qualifications: * Track record of scientific excellence and independent thinking. * Experience in computational neuroscience and/or systems neuroscience is preferred, but other strong applicants will be considered (with background in computational physics, biophysics, and related disciplines). * Candidates with strong background in experimental systems neuroscience, willing to switch to computational work, are encouraged to apply. * Experience with scientific programming (e.g., in Python) and sharing/collaborative development of software (e.g., GitHub) is a plus. It is the policy of the Allen Institute to provide equal employment opportunity (EEO) to all persons regardless of age, color, national origin, citizenship status, physical or mental disability, race, religion, creed, gender, sex, sexual orientation, gender identity and/or expression, genetic information, marital status, status with regard to public assistance, veteran status, or any other characteristic protected by federal, state or local law. In addition, the Allen Institute will provide reasonable accommodations for qualified individuals with disabilities. Anton Arkhipov Associate Investigator T: 206.548.8414 [cid:image002.png@01D5F0BA.BCEF7290] www.alleninstitute.org<http://www.alleninstitute.org/>

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Quantitative Systems Pharmacology (QSP) positions (all levels) at Certara
by Hugo Geerts March 2, 2020

March 2, 2020

The Certara Quantitative Systems Pharmacology (QSP) group, a global organization focused on the impactful application of QSP and mechanistic PKPD modeling and simulation in drug discovery and development is seeking highly motivated and talented QSP modelling experts at all levels, who share our passion for using quantitative approaches to understand and impact complex drug discovery and development questions. Certara is now also the leading provider of QSP approaches in neuro-degenerative diseases through the recent acquisition of the In Silico Biosciences modelling platform. Full time positions are available at various levels of experience across our global locations and for flexible, home-based roles. We are looking for individuals with * Postdoctoral experience in systems modelling for drug discovery/ development teams. * PhD (or equivalent) in life sciences, engineering, computer sciences, mathematics physics or equivalent. * Good understanding of PKPD, pharmacology and biology and its application in drug discovery and development. * Very familiar and outstanding hands-on expertise with Matlab, Neuron or other similar modelling software. * Strong publication record (commensurate with level of experience). Team working * Excellent interpersonal skills. * Skilled and experienced at facilitating a multi-disciplinary team to work together on a complex project. * Ability to clearly and efficiently communicate with all stakeholders. * Organized and with track record of delivering quality results on time. Personal * Ability to work virtually with project teams across different locations and time zones. * Leads by example. * Self-reliant. Other skills * Highly computer literate and familiar with modern IT and communications technology. * Good presentation skills. * Combines scientific excellence with ability to make impact in drug discovery and development programs. * Ability to manage multiple client project timelines and deliverables simultaneously. Role (depending on experience) * Overall responsibility for project delivery of quality QSP solutions on time. * Provide hands-on technical support for model building when required. * Work with clients to ensure they receive the expected added value. * Work with the consortium/ consulting teams to ensure optimal deployment of resources. * Work with Certara QSP line management to deliver optimum solutions. * Provide general expert technical input across Certara QSP portfolio. * Mentor other Certara QSP staff. Further information about Certara : https://www.certara.com/ Closing Date for Applications: Midnight (UK time), 29th March 2020 Applications: Please send your CV, covering letter to the Certara Careers Page: https://workforcenow.adp.com<https://workforcenow.adp.com/mascsr/default/mdf/recruitment/recruitment.htm…> NOTICE: The information contained in this electronic mail message is intended only for the personal and confidential use of the designated recipient(s) named above. This message may be an attorney-client communication, may be protected by the work product doctrine, and may be subject to a protective order. As such, this message is privileged and confidential. If the reader of this message is not the intended recipient or an agent responsible for delivering it to the intended recipient, you are hereby notified that you have received this message in error and that any review, dissemination, distribution, or copying of this message is strictly prohibited. If you have received this communication in error, please notify us immediately by telephone and e-mail and destroy any and all copies of this message in your possession (whether hard copies or electronically stored copies). Thank you. buSp9xeMeKEbrUze

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In-vivo two-photon imaging of synaptic proteins_Postdoc opportunity in Australia
by Patricio Opazo Olavarria March 2, 2020

March 2, 2020

Dear colleagues, There is an exciting postdoc opportunity to investigate the molecular basis of memory formation in the lab of Dr. Patricio Opazo and Dr. Victor Anggono at the Queensland Brain Institute in Brisbane, Australia. The project will involve implementing a visual discrimination go/no go task in awake mice under the two-photon microscope to visualize the dynamics of synaptic proteins during learning and memory in the visual cortex. For more information about this position please contact Dr Patricio Opazo on email p.opazo(a)uq.edu.au<mailto:p.opazo@uq.edu.au>. or Apply directly at the University of Queensland Jobs search here: http://search.jobs.uq.edu.au/caw/en/job/509656/postdoctoral-research-fellow Kind regards, Pato ********************************************************** Patricio Opazo, PhD Group Leader Clem Jones Centre for Ageing Dementia Research Queensland Brain Institute The University of Queensland Building 79, Upland Rd Brisbane Qld 4072 Australia T +61 7 3443 2485 M +61 (0)428 311 510 E p.opazo(a)uq.edu.au W qbi.uq.edu.au/opazogroup CRICOS code: 00025B [signature_1643568986] The University of Queensland is embracing the Green Office philosophy. Please consider the environment before printing this email. This email (including any attached files) is intended solely for the addressee and may contain confidential information of The University of Queensland. If you are not the addressee, you are notified that any transmission, distribution, printing or photocopying of this email is prohibited. If you have received this email in error, please delete and notify me. Unless explicitly stated, the opinions expressed in this email do not represent the official position of The University of Queensland.

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Postdoctoral Position in Computational Neuroscience, Barcelona, Spain
by Alex Roxin March 2, 2020

March 2, 2020

A. Roxin, Centre de Recerca Matemàtica, Bellaterra (Barcelona), Spain. Available immediately. Applications will be accepted until the position is filled. We are looking for a highly motivated researcher to study the network mechanisms underlying episodic memory formation in hippocampus. The project involves modelling as well as the analysis of electrophysiological and Ca-imaging data from mice. The ideal candidate has a strong background in math, physics or similar field. Experience in neuroscience is highly desirable but not required. To apply please send a CV, letter of interest, and contact information for two references to Alex Roxin at aroxin(a)crm.cat. Pre-application inquiries can be sent to the same address. -- Alex Roxin Computational Neuroscience Group Centre de Recerca Matemàtica Campus de Bellaterra, Edifici C 08193, Bellaterra (Barcelona) Spain https://sites.google.com/site/alexanderroxin/home

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PhD Position in Multilingualism/Psycholinguistics
by Narly Golestani March 1, 2020

March 1, 2020

With the launch of a new ‘NCCR Evolving Language’ (http://www.snf.ch/SiteCollectionDocuments/nfs/Faktenblatt_NCCR_evolvinglang…) which involves nearly 40 different research groups from a large variety of disciplines across Switzerland, we seek to fill a PhD position for a four-year project starting in May 2020, or at the selected candidate’s convenience. Our goal is to make progress in understanding language giftedness from cognitive, psychological and neural perspectives. To this end, we plan to carry out a set of studies involving both behavioral measures of cognitive and language-related abilities (e.g. auditory/perceptual abilities, phonemic perception and production, inductive learning, working memory etc) and brain imaging measures (fMRI and sMRI). The research group involves two PIs (Golestani, Geneva; and Berthele, Fribourg) and a postdoc. Data will be collected with Francophone (mono- and multilingual) subjects. Applicants should hold an MA degree in psychology, linguistics or a related field (e.g. psycholinguistics, applied linguistics, multillingualism), have a good command French and English and have strong quantitative research and statistics skills. Additional mastery of German and experience with neuroimaging techniques would be a strong advantage. The NCCR places great emphasis on gender diversity and we particularly encourage women to apply. Applicants may send a pdf file including a cover letter, a CV, names and contact information of 2-3 references as well as any other relevant documents to Narly.Golestani(a)unige.ch<mailto:Narly.Golestani@unige.ch> and Raphael.berthele(a)unifr.ch<mailto:Raphael.berthele@unifr.ch>. Deadline for application: March 31 2020 ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Brain and Language Lab Prof. Narly GOLESTANI Department of Psychology Campus Biotech 9 Chemin des Mines, 1202 Genève +41 22 379 53 52 <https://outlook.unige.ch/owa/redir.aspx?SURL=5WTo-p-J-W9FrDydU-0WU4PdMytUGs…>http://www.brainandlanguagelab.org https://twitter.com/brain_lang_lab ----------------------------------------------------------------------------------------------------------------------------------------------------------------- <https://outlook.unige.ch/owa/redir.aspx?SURL=5WTo-p-J-W9FrDydU-0WU4PdMytUGs…>

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Postdoc position at the University of Melbourne, Australia
by Anthony Burkitt March 1, 2020

March 1, 2020

Postdoctoral research fellow position in Neuroengineering / Computational Neuroscience at The University of Melbourne, Australia Applications close: 10 Mar 2020 11:55 PM Australian Eastern Daylight Time (UTC+11) http://jobs.unimelb.edu.au/caw/en/job/902247/research-fellow-in-neuroengine… We are seeking an emerging, self-motivated individual with the ability to work collaboratively with the team, as well as lead their own research activities, to contribute to a multidisciplinary project at the forefront between neuroscience, robotics and artificial intelligence. This is the perfect opportunity for anyone looking to develop a career in research and apply their mathematical skills to neuroscience. This role will work in The Bionics, Biomedical Imaging and Neuroengineering group, comprised of leading internationally recognised researchers. You will work on a multidisciplinary project on perception, navigation and spatial awareness, in which the insights and mechanisms from neuroscience and the modelling of neural systems, particularly of vision and other sensory systems, can be analysed and used to inspire applications in autonomous robots and other artificial systems. Regards, Tony Burkitt Professor Anthony N. Burkitt BSc (Hons) PhD Chair of Bio-Signals and Bio-Systems NeuroEngineering Laboratory, Department of Biomedical Engineering Melbourne School of Engineering The University of Melbourne, Victoria 3010 Australia T: +61 3 90353552 І M: +61 422 960 880 І E: aburkitt(a)unimelb.edu.au<mailto:aburkitt@unimelb.edu.au> W: www.eng.unimelb.edu.au<http://www.eng.unimelb.edu.au> http://www.bme.unimelb.edu.au

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Modellers Workshop for the Brain Dynamics Toolbox, 1-20 March 2020
by Stewart Heitmann Feb. 29, 2020

Feb. 29, 2020

Modeller’s Workshop for the Brain Dynamics Toolbox Online Course Mar 1-20, 2020 The Brain Dynamics Toolbox is an open toolbox for simulating dynamical systems in neuroscience. This on-line course is for researchers, students and instructors who wish to use the toolbox to build their own dynamical models. Participants learn the art of programming differential equations in Matlab and how to use the toolbox to solve those equations interactively. Topics include programming Ordinary Differential Equations, Partial Differential Equations, Delay Differential Equations, Stochastic Differential Equations, Auxiliary Plot Functions and command-line tools. Example code is provided in all cases. Course Website https://bdtoolbox.org/p/modellers-workshop/ Important Dates Early-bird enrolments ($100) close Sunday 8th March, 2020. Late enrolments ($125) close Friday 20th March, 2020. Stewart Heitmann | Computational Scientist Victor Chang Cardiac Research Institute | Lowy Packer Building | 405 Liverpool St, Darlinghurst NSW 2010 Australia E: s.heitmann(a)victorchang.edu.au<mailto:s.heitmann@victorchang.edu.au> | @VictorChangInst Disclaimer The information contained in this communication from the sender is confidential. It is intended solely for use by the recipient and others authorized to receive it. If you are not the recipient, you are hereby notified that any disclosure, copying, distribution or taking action in relation of the contents of this information is strictly prohibited and may be unlawful. This email has been scanned for viruses and malware, and may have been automatically archived by Mimecast Ltd, an innovator in Software as a Service (SaaS) for business. Providing a safer and more useful place for your human generated data. Specializing in; Security, archiving and compliance. To find out more visit the Mimecast website.

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