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CFP SAB 2020: FROM ANIMALS TO ANIMATS 16th International Conference on the Simulation of Adaptive Behavior - Cergy-Pontoise, France, 22-24 Sep 2020 -- deadline: 1st Apr 2020
by alexandre pitti Nov. 12, 2019

Nov. 12, 2019

Call for papers for the 16th International Conference on the Simulation of Adaptive Behavior (SAB2020) SAB 2020 : FROM ANIMALS TO ANIMATS 16 that will be held at Cergy-Pontoise University (near Paris), France 22-24 september 2020 + workshops day 21st https://sab2020.sciencesconf.org/ *Scope of the Conference* ========================= The objective of this interdisciplinary conference is to bring together researchers in computer science, artificial intelligence, artificial life, control, robotics, neurosciences, ethology, evolutionary biology and related fields in order to further our understanding of the behaviors and underlying mechanisms that allow natural and artificial animals to adapt and survive in uncertain environments. The conference will focus on experiments with well-defined models including robot models, computer simulation models and mathematical models designed to help characterize and compare various organizational principles or architectures underlying adaptive behavior in real animals and in synthetic agents, the animats. *Location* ========== Cergy-Pontoise University, close to Paris, France *Relevant Research Areas* ========================= SAB2020 solicits contributions dealing with any aspect of adaptive behavior in natural and artificial systems. Typical, but not exclusive, topics of interest are: The animat approach Motor control Body and brain co-evolution Self-assembling and self-replication Sensory-motor coordination Action selection and behavioral sequencing Navigation and mapping Internal models and representation Evolution, development and learning Collective and social behavior Applied adaptive behavior Motivation and emotion Communication and language Emergent structures and behaviors Neural correlates of behavior Evolutionary and co-evolutionary approaches Bio-inspired and hybrid robotics Autonomous robotics Humanoid robotics Cognitive and developmental robotics Software agents and virtual creatures Philosophical and psychological issues Animats in education *Conference Format* =================== Following the tradition of SAB conferences, the conference will be single track with additional poster sessions. There will also be a day of tutorials. *Important Dates* ================= The conference will be held between 22-24 Sep 2020 and the 21st of September will be dedicated to workshops and tutorials Submission deadline : 1st of April, 2020 Notification of Acceptance : 1st of May, 2020 Camera ready: 1st of June, 2020 workshops/tutorials: 21st of September, 2020 Venue: 22nd-24th of September, 2020 Workshop/Tutorial Proposal Deadline: 21st May, 2020 Workshop/Tutorial Notification of Acceptance: 31th May, 2020 *Paper Submission Instruction and Publication Details* ====================================================== Submitted papers must not exceed 12 pages. Detailed submission instructions are available from the conference website (https://sab2020.sciencesconf.org/) Special Issue to Springer Lecture Notes in Artificial Intelligence All accepted papers with oral or poster presentation will be published in Springer Lecture Notes in Artificial Intelligence series conference proceedings. Selected authors may additionally be invited to submit extended versions for a conference Special Issue of the Journal of Adaptive Behavior. *Workshops & tutorials* ======================= The SAB2020 organizing committee invites proposals for workshops and tutorials, which will be held on the 21st of September, 2020. Instructions for preparing the tutorial proposal and further details on the tutorials will be found at http://www.sab2020.sciencesconf.org *Best Paper Award* ================== Two best paper prizes will be awarded at the end of the conference to honour the authors of papers of exceptional merit. For more information please refer to the official SAB2020 website. *Further Information* ===================== Up-to-date information will be published on the website https://sab2020.sciencesconf.org/ . For information about local arrangements, registration forms, etc., please refer to the website or contact the local organizers at the address below. * Organizers * ============== ETIS laboratory, CNRS UMR 8051, Université de Cergy-Pontoise, ISAB Philippe Gaussier General Chair, UCP Sofiane Boucenna Program Chair, UCP Nicolas Cuperlier Program Chair, UCP Alexandre Pitti Local Chair and Publicity Chair, UCP TBA *Conference Address* ==================== Laboratoire ETIS, Département Informatique Université de Cergy-Pontoise, Site Saint-Martin 2 avenue Adolphe Chauvin, 95302 Cergy-Pontoise, France *Contact * ========== [ mailto:sab2020@sciencesconf.org | sab2020(a)sciencesconf.org ]

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Call for graduate students
by Joshua Hartshorne Nov. 11, 2019

Nov. 11, 2019

The laboratories of Joshua Hartshorne and Stefano Anzellotti at Boston College are accepting applications for co-advised graduate students starting in Fall 2019, for collaborative projects focusing on computational modeling of fMRI and other neural data. We are particularly interested in finding a student to work on understanding individual variation in functional connectivity. Applications could be to the neural processing of language, social perception, or other high-level cognitive problems. The application deadline is December 15th. If you have any questions you can contact us at stefano.anzellotti[at]bc.edu. To apply, visit https://www.bc.edu/bc-web/schools/mcas/graduate/admission/apply-now.html

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[meetings] [LM2020] Living Machines 2020 - First call for papers
by Vicky Vouloutsi Nov. 11, 2019

Nov. 11, 2019

Dear colleagues, Please find below the first call for papers, satellite events, and sponsors for the 9th International Conference on Biomimetic and Biohybrid Systems of Living Machines, 28th-31st of July 2020. Apologies for cross-posting but please share this announcement with your colleagues. Looking forward to seeing you in Freiburg, Germany! -------------------------------------------------------------------------------------------------------------------------- *First Call for Papers, Satellite Events and Sponsors* *Living Machines. The 9th International Conference on Biomimetic and Biohybrid Systems* * 28 – 31 July 2020* To be hosted at the Botanical Garden of Freiburg and the Cluster of Excellence livMatS at the University of Freiburg, Germany Accepted papers will be published in *Springer Lecturer Notes in Artificial Intelligence* *Submission deadline: March 23, 2020* http://livingmachinesconference.eu/2020 -------------------------------------------------------------------------------------------------------------------------- *ABOUT LIVING MACHINES 2020* The development of future real-world technologies will depend strongly on our understanding and harnessing of the principles underlying living systems and the flow of communication signals between living and artificial systems. *Biomimetics* is the development of novel technologies through the distillation of principles from the study of biological systems. The investigation of biomimetic systems can serve two complementary goals. First, a suitably designed and configured biomimetic artefact can be used to test theories about the natural system of interest. Second, biomimetic technologies can provide useful, elegant and efficient solutions to unsolved challenges in science and engineering. *Biohybrid* systems are formed by combining at least one biological component—an existing living system—and at least one artificial, newly-engineered component. By passing information in one or both directions, such a system forms a new hybrid bio-artificial entity. The theme of the conference also encompasses biomimetic methods for manufacture, repair, and recycling inspired by natural processes such as reproduction, digestion, morphogenesis, and metamorphosis. The following are some examples of “Living Machines” as featured at past conferences: * Biomimetic robots and their component technologies (sensors, actuators, processors) that can intelligently interact with their environments. * Biomimetic computers—neuromimetic emulations of the physiological basis for intelligent behavior. * Active biomimetic materials and structures that self-organize and self-repair or show other bio-inspired functions. * Nature-inspired designs and manufacturing processes. * Biohybrid brain-machine interfaces and neural implants. * Artificial organs and body-parts including sensory organ-chip hybrids and intelligent prostheses. * Organism-level biohybrids such as robot-animal or robot-human systems. *ACTIVITIES* The main conference will take the form of a *three-day single-track oral* and *poster presentation program*, *28th July to 31st July 2020*, and will be hosted at the Botanical Garden of Freiburg by the University of Freiburg, Germany, and the Cluster of Excellence “Living, Adaptive and Energy-autonomous Materials Systems (livMatS)” (www.livmats.uni-freiburg.de<http://www.livmats.uni-freiburg.de>). The conference program will include *five plenary lectures* from leading international researchers in biomimetic and biohybrid systems, and the demonstrations of state-of-the-art living machine technologies. The full conference will be preceded by up to two days of *Satellite Events* hosted at the University of Freiburg. *SUBMITTING TO LIVING MACHINES 2020* We invite both *full papers* and *extended abstracts* in areas related to the conference themes. All contributions will be refereed and accepted papers will appear in the Living Machines Proceedings, published in the *Springer-Verlag Lecture Notes in Artificial Intelligence*. Full papers (minimum 8 pages, up to 12 pages) are invited from researchers at any stage in their career and should present significant findings and advances in biomimetic or biohybrid research. More preliminary work is better suited for short paper submission (maximum 4 pages, with a maximum of ten references and no more than three self-citations). Full papers will be accepted for either oral presentation (single track) or poster presentation with a short podium preview. Extended abstracts will be accepted for poster presentations only. Authors of the best full papers will be invited to submitted extended versions of their paper for publication in a special issue of the Taylor & Francis journal *Connection Science*. *SATELLITE EVENTS* Active researchers in biomimetic and biohybrid systems are invited to propose topics for full or half-day *tutorials*, *symposia* or *workshops* on related themes to be held on 28. July at the Institute for Biology II/III of the University of Freiburg (http://www.bio.uni-freiburg.de/index-en?set_language=en) Attendance at satellite events will attract a small fee intended to cover the costs of the meeting. There is flexibility about the content, organization, and budgeting for these events. Please contact us if you are interested in organizing a satellite event! *EXPECTED DEADLINES* March 23, 2020: Paper submission deadline May 15, 2020: Notification of acceptance May 25, 2020: Camera-ready copy July 28, 29-31, 2020 Workshops and Conference *SPONSORSHIP* Organizations wishing to sponsor the conference in any way and gain the corresponding benefits by promoting themselves and their products through conference publications, conference events, and conference publicity are encouraged to contact the organizers to discuss the terms of sponsorship and necessary arrangements. We also offer a number of attractive options for potential sponsors. *VENUE* Consistent with the Living Machines’ tradition of choosing historical venues at the crossroads between life and human sciences, this year the conference will take place at the Botanical Garden of Freiburg. Freiburg is considered the gateway to the Black Forest and thanks to its geographical location is blessed with mild weather all year round. The city is over 900 years old and known to be the sunniest city(1,740 hours of sunshine/year) in Germany. Freiburg has a beautiful historical inner city and is home to one of the oldest universities and Botanical Gardens in Germany. The Botanical Garden Freiburg will be celebrating its 400 year anniversary in 2020 and is located in the district Herdern near the Botanical Institute of the University of Freiburg. The Botanical Garden invites visitors to enjoy its wonderful greenery and learn about both plants from all around the world and plant-based biomimetics with its biomimetic educational trail. The trail highlights biomimetic inventions based on plants while providing fascinating insights into underlying biological principles. *CONFERENCE ORGANIZING COMMITTEE* *Thomas Speck* University of Freiburg, Germany (Local Chair) *Paul Verschure* IBEC, BIST, ICREA, CSN Foundation (Co-Chair) *Tony Prescott* University of Sheffield, CSN Foundation (Steering Committee) *Anna Mura* IBEC, BIST Barcelona, CSN Foundation (General Organization) *PROGRAM CHAIR* *Vicky Vouloutsi* IBEC, BIST, Barcelona *COMMUNICATION* *Sonja Seidel* University of Freiburg, Germany *Yulia Sandamirskaya* INI, Zurich Univ. and ETH *WORKSHOPS CHAIR* *Falk Esser* University of Freiburg, Germany *LOCAL ORGANIZERS COMMITTEE* *Thomas Speck* University of Freiburg, Germany *Falk Esser* University of Freiburg, Germany *Sonja Seidel* University of Freiburg, Germany -- Vicky Vouloutsi, PhD Postdoc Researcher at the laboratory for Synthetic Perceptive, Emotive and Cognitive Systems (SPECS<http://specs-lab.com/>) mail: vvouloutsi(a)ibecbarcelona.eu<mailto:vvouloutsi@ibecbarcelona.eu> linkedin<https://www.linkedin.com/in/vicky-vouloutsi-28496133/> researchgate<https://www.researchgate.net/profile/Vasiliki_Vouloutsi> tel: +34 934011913 Aquest correu electrònic conté informació confidencial emparada pel secret professional. Qualsevol reproducció, distribució o divulgació del seu contingut estan estrictament prohibides. Si vostè no és el destinatari, li preguem no faci difusió ni copiï el seu contingut i ens ho notifiqui el més aviat possible a l'adreça dataprotection(a)ibecbarcelona.eu Este correo electrónico contiene información confidencial amparada por el secreto profesional. Cualquier reproducción, distribución o divulgación de su contenido están estrictamente prohibidas. Si usted no es el destinatario, le rogamos no difunda ni copie su contenido y nos lo notifique de inmediato a la dirección dataprotection(a)ibecbarcelona.eu This electronic transmission contains confidential information covered by professional secrecy. Any reproduction, distribution or disclosure of its contents is strictly prohibited. If you are not the intended recipient, you are kindly requested not to disseminate nor to copy this transmission and to notify us as soon as possible by email to dataprotection(a)ibecbarcelona.eu .

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Call for Papers for Journal of Neuroscience Methods Special Issue: Multiscale Modelling and Analysis in Neuroscience
by Wong-Lin, Kongfatt Nov. 11, 2019

Nov. 11, 2019

I am co-editing a Special Issue on Multiscale Modelling and Analysis in Neuroscience in the Journal of Neuroscience Methods. The Special Issue is focused on state-of-the-art: (i) computational modelling techniques; (ii) theoretical, mathematical or numerical methods; (iii) analysis of data; (iv) curation of data; or (v) combinations of the above. For more information, please see: https://www.journals.elsevier.com/journal-of-neuroscience-methods/call-for-… There is an open call for papers for this Special Issue. Both original research and insightful reviews are welcomed. Please contact me or any of the other co-editors if you are interested or have queries. The deadline for submissions is 30th April, 2020. Manuscripts will undergo the normal peer review process as soon as they are submitted. Best, KongFatt Wong-Lin -------------------------- E-mail: k.wong-lin(a)ulster.ac.uk https://www.ulster.ac.uk/staff/k-wong-lin This email and any attachments are confidential and intended solely for the use of the addressee and may contain information which is covered by legal, professional or other privilege. If you have received this email in error please notify the system manager at postmaster(a)ulster.ac.uk and delete this email immediately. Any views or opinions expressed are solely those of the author and do not necessarily represent those of Ulster University. The University's computer systems may be monitored and communications carried out on them may be recorded to secure the effective operation of the system and for other lawful purposes. Ulster University does not guarantee that this email or any attachments are free from viruses or 100% secure. Unless expressly stated in the body of a separate attachment, the text of email is not intended to form a binding contract. Correspondence to and from the University may be subject to requests for disclosure by 3rd parties under relevant legislation. The Ulster University was founded by Royal Charter in 1984 and is registered with company number RC000726 and VAT registered number GB672390524.The primary contact address for Ulster University in Northern Ireland is Cromore Road, Coleraine, Co. Londonderry BT52 1SA

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Computational Neuroscience Research Scientist Faculty Position in Toronto - Krembil Research Institute
by Frances Skinner Nov. 9, 2019

Nov. 9, 2019

Hello all, Please consider applying for the following position. Position: *Computational Neuroscience Research Scientist* Site: Krembil Research Institute/Toronto Western Hospital Department: Research Reports to: Institute Director Status: Permanent Full-time https://www.recruitingsite.com/csbsites/uhncareers/JobDescription.asp?SiteI… The ideal candidate will have a PhD in a relevant field, research expertise and experience in mathematical and computational modeling, and research interests that complement those of the Institute in neurobiology and neurodegeneration. Candidates whose research interests encompass cellular, micro/macro circuits and/or large scale brain models, and who have collaborative experimental experience are especially encouraged. The successful candidate will have the ability to establish an independent, well-funded program and will be eligible for appointment at the appropriate level within the University of Toronto. Qualified applicants are invited to submit their online application (letter of interest, research plan, curriculum vitae), in PDF format as well as complete some initial screening questions. The search committee will begin to review applications in January with a potential start date in Spring/Summer 2020. Please feel free to contact me if you have any questions. -- Frances Skinner, PhD Krembil Research Institute/UHN and Univ Toronto www.skinnerlab.org

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NeuroFedora: ready to use/install ISO for computational neuroscience available
by Ankur Sinha Nov. 8, 2019

Nov. 8, 2019

Hello, The NeuroFedora community is pleased to announce its first deliverable: a ready to use/install Fedora based ISO image that includes a plethora of computational neuroscience software[1]. It currently includes: auryn, bionetgen, calcium-calculator, COPASI, qalculate, getdp, genesis-simulator, gnuplot, moose, nest, neuron, neurord, octave, paraview, python3, brian2, ipython, nest, neuron, libNeuroML, neo, nineml, PyLEMS, smoldyn and the Python science stack: matplotlib, jupyter notebook, numpy, pandas, pillow, scikit-image, scikit-learn, scipy, statsmodels, and sympy. The ISO image is a "live" image and can be used without installing the operating system. It can be obtained here[1] with more information on NeuroFedora available here[2,3]. NeuroFedora is a Free/Open Source Software community based volunteer initiative. We are always looking for more volunteers to help with the work[4]. It is an excellent project for students new to computational neuroscience to learn valuable technical skills while aiding the neuroscience community. Feedback is always welcome. Please get in touch using one of our communication channels[5]. [1] https://docs.fedoraproject.org/en-US/neurofedora/install-media/ [2] https://docs.fedoraproject.org/en-US/neurofedora/ [3] https://neuroblog.fedoraproject.org [4] https://docs.fedoraproject.org/en-US/neurofedora/contributing/ [5] https://docs.fedoraproject.org/en-US/neurofedora/communicating/ On behalf of the NeuroFedora community, -- Thanks, Regards, Ankur Sinha (He / Him / His) | https://ankursinha.in PhD candidate in computational neuroscience at UH Biocomputation | http://biocomputation.herts.ac.uk/ Free/Open source community volunteer at the Fedora project | https://fedoraproject.org/wiki/User:Ankursinha Time zone: Europe/London

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PhD in computational neuroscience, University of Edinburgh
by Matthias Hennig Nov. 7, 2019

Nov. 7, 2019

We invite applications for our fully funded PhD programme in COMPUTATIONAL NEUROSCIENCE and NEUROINFORMATICS at the School of Informatics, University of Edinburgh, for a start in or around September 2020. The studentships are ideal for students who want to apply their computational and analytical skills to problems in neuroscience and related fields. The following supervisors have openings: Douglas Armstrong: Molecular neuroinformatics, network models, behavioural models, molecular drug design. Angus Chadwick (joining early 2020): Visual and spatial processing, network dynamics, neural data analysis. Matthias Hennig: Learning and homeostasis, analysis of large-scale electrophysiological recordings. Arno Onken: Probabilistic models, dimensionality reduction, information theory. Peggy Seriès: Bayesian approaches to cognition and perception, computational psychiatry. Ian Simpson: Regulatory genomics, developmental disorders. Barbara Webb: Perceptual systems for the control of behaviour, robot models of animals. The PhD project can be done in collaboration with one of the many affiliated departments and institutes. Edinburgh has been voted as 'best place to live in Britain', and has many exciting cultural and student activities. Students with a strong background in either computer science, mathematics, physics or engineering are particularly welcome to apply. Motivated students with other backgrounds will also be considered. For more information, see: http://web.inf.ed.ac.uk/anc/research/neuroscience There is no fixed deadline, but applications completed by 29 Nov 2019 will be considered in a first round, with decisions expected by late January 2020. -- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.

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Competition funded PhD position on computational sensorimotor control @ U of Birmingham and U of Warwick
by Sang-Hoon Yeo Nov. 6, 2019

Nov. 6, 2019

Title: The integration of visually-guided interception with balance Supervisors: Dr R Reynolds (Bham), Dr Sang-Hoon Yeo (Bham) and Prof James Tresilian (Warwick) Type: Competition Funded PhD Project (European/UK Students Only) Project Description Control of fast interceptive movements is the highlight of human sensorimotor behaviour, whose flexibility and adaptability far surpasses that of any existing robot. The neural control mechanism of interceptive movement remains elusive. For example, when an object that we are reaching for moves unexpectedly, the hand is ‘magnetically’ drawn towards the new object location. These trajectory adjustments occur within a remarkably short latency (<100ms), do not require conscious awareness of the change, and may rely upon sub-cortical neural circuitry[1]. We have demonstrated that this exceptionally fast visuomotor system also controls the lower limb when attempting to step onto a moving target [2]. However, when standing, such automatic adjustments may threaten balance, which is also largely controlled by sub-cortical brain circuitry. For example, reaching for a moving object (e.g. catching a ball), causes a concomitant shift of the centre of mass which disturbs the balance, but we rarely fall. The apparently contradictory requirements of reaching and balancing must therefore be somehow seamlessly integrated at a low neural level. Staying upright in the face of such self-imposed perturbations is natural for humans, but we still do not understand the underlying mechanism(s). For example, attempts to implement such control into bipedal robots often leads to catastrophic falls (see DARPA challenge https://bit.ly/1Il2QVS) This failure to coordinate interception and balance can also lead to human falls as a result of neural degeneration (e.g. ageing). We plan to investigate the integration of these two systems, balance and interception, at both a behavioural and neural level, to address the following questions: How are balance and visually-guided interception integrated, and what are the limits of this process? What neural circuitry underlies this integration? How does normal ageing affect the integration process, and what are the consequences for fall risk? We will address these questions using a combination of techniques from Biomechanics, Neurophysiology and Robotics. To study the integration of balance and interception we will use virtual reality to present visual interception targets. This will allow us to subtly manipulate the relationship between hand and target motion [3]. Limb trajectory will be recorded using motion capture and processed in real-time to manipulate visual feedback. Balance will be simultaneously assessed by measuring ground reaction forces and full-body motion capture. The limits of the integration process (i.e. when do you fall?) will first be tested in young healthy individuals. To understand the neural circuitry we will use Transcranial Magnetic Stimulation (TMS)[4], Electromyography and H-reflexes. These techniques will allow us to determine the relative contribution of cortical and sub-cortical brain areas to these behaviours. This, in turn, will also have relevance for understanding rehabilitation of balance following brain injury. Finally, we will study older adults. This will determine the extent to which the ability to combine interception and balance is compromised by the ageing process, and the relevance for fall risk. Funding Notes This project is funded by the Midlands Integrative Biosciences Partnership. MIBTP is a BBSRC funded Doctoral Training Partnership between the University of Warwick, the University of Birmingham, the University of Leicester and Aston University and Harper Adams University. Successful candidates will start in October 2020. Candidates can apply via the MIBTP website (Weblink coming here soon) but are strongly encouraged to contact Raymond Reynolds for further information prior to applying (r.f.reynolds(a)bham.ac.uk) References 1. B.L. Day, P. Brown, Evidence for subcortical involvement in the visual control of human reaching, Brain. 124 (2001) 2. R.F. Reynolds, B.L. Day, Rapid visuo-motor processes drive the leg regardless of balance constraints, Curr. Biol. 15 (2005). 3. S.H. Yeo, D.W. Franklin, D.M. Wolpert, When Optimal Feedback Control Is Not Enough: Feedforward Strategies Are Required for Optimal Control with Active Sensing, PLoS Comput. Biol. 12 (2016). 4. W. Marinovic, C.S. Reid, A.M. Plooy, S. Riek, J.R. Tresilian, Corticospinal excitability during preparation for an anticipatory action is modulated by the variability of visual information, J. Neurophysiol. 105 (2011).

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Call for PhD positions in Computational Neuroscience|Cognitive Science| Psychology|Neurophysics @ IMPRS NeuroCom
by Martin Bogdan Nov. 6, 2019

Nov. 6, 2019

***Call for applications The International Max Planck Research School on Neuroscience of Communication: Function, Structure, and Plasticity (IMPRS NeuroCom) offers several positions for excellent students holding a master's degree (or equivalent) to perform research resulting in a PhD in the field of Cognitive Neuroscience and Neurophysics. The IMPRS NeuroCom is based at the Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig and Leipzig University and also involves the Max Planck Institute for Evolutionary Anthropology, Leipzig, and the Institute of Cognitive Neuroscience at the University College London, UK. ****Deadline for applications is 10 November 2019. Interviews will take place in January 2020. Starting date is flexible, but not later than autumn 2020. The IMPRS NeuroCom aims to recruit and educate motivated, independent, self-organized young scientists who wish to extend their knowledge and research experience in a structured 3-year PhD program, in order to pursue a successful career in cognitive neuroscience, clinical neuroscience, or neurophysics. The school is intended for students holding an excellent master's degree (or equivalent) in a wide spectrum of potential disciplines such as cognitive neuroscience, psychology, medicine, neurobiology, linguistics, computer science, engineering, mathematics, physics, biochemistry, or related fields. The university degree should be awarded by an internationally recognized university-level institution. Students near the completion of their master’s degree are also eligible to apply. Research experience in an area that is related to the graduate school’s scope is essential for successful candidates. Proficiency in oral and written English is mandatory. The IMPRS NeuroCom offers its doctoral students outstanding research opportunities in a very international and multidisciplinary environment with access to state-of-the-art cognitive and imaging neuroscience equipment, e.g. 7T MRI scanner, four 3T MRI scanners including a “connectome scanner” equipped with ultrastrong gradients (one of only three world-wide), a 306 channels MEG system, several TMS, TDCS, NIRS, and EEG systems. Applications will be evaluated by IMPRS NeuroCom faculty members. Interview selection is based on academic qualifications, personal references, research experience and interests, and suitability to the program. The Max Planck Society is an equal opportunity employer and is committed to increasing the number of individuals with disabilities in its workforce and therefore encourages applications from such qualified individuals. Payment is based on the guidelines of German public service pay scale (TVöD). For more information about our graduate school please visit: http://imprs-neurocom.mpg.de/home/ Please see http://imprs-neurocom.mpg.de/home/applications for details and use http://imprs-neurocom.mpg.de/home/applications/how-to-apply/registration-fo… for your application. For further information please contact Dr Veronika Krieghoff: vkrieghoff(a)cbs.mpg.de -- ************************************************************************** Prof. Dr. Martin Bogdan Institut für Informatik Technische Informatik Universität Leipzig Augustusplatz 10 D-04109 Leipzig Germany ************************************************************************** Denken Sie selbst, sonst tuen es Maschinen für Sie! 'Nihil est ab omni parte beatum' (Horaz) El problema de la humanidad es que los estúpidos están seguros de todo y los inteligentes están llenos de dudas **************************************************************************

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Research Fellow in Computational Neuroscience, University of Warwick, UK
by Timofeeva, Yulia Nov. 6, 2019

Nov. 6, 2019

Research Fellow in Computational Neuroscience Department of Computer Science, University of Warwick, UK Fixed Term Contract for 3 years from 1 January 2020. The appointee will work on a project funded by the MRC that aims to develop and implement a mechanistic modelling framework for studying regulation of synaptic transmitter release in health and disease. This project will be led by Dr Yulia Timofeeva with the co-applicant Prof Kirill Volynski (UCL Queen Square Institute of Neurology, London) and in close collaboration with a number of world-leading experimental laboratories working in the field of synaptic transmission and information processing in the brain, that are located in Europe, USA, Canada and Japan. The successful candidate should have a PhD, or equivalent, in applied mathematics/theoretical physics/computer science or a related discipline and should have excellent skills in scientific computing. Previous experience of research in computational biology or neuroscience is desirable. The working environment will be in the Mathematical Science Building, in the Zeeman Institute for Systems Biology & Infectious Disease Epidemiology Research (SBIDER, https://warwick.ac.uk/fac/cross_fac/zeeman_institute/) For further details see https://www.dcs.warwick.ac.uk/~yulia/job_102287_109.html https://warwick.ac.uk/fac/sci/dcs/jobs/ Deadline for applications: 21 November 2019 -- __________________________________________ Dr Yulia Timofeeva Associate Professor Department of Computer Science and Centre for Complexity Science Warwick, UK Honorary Associate Professor UCL, Institute of Neurology London, UK Tel: 024 765 73786 http://www.dcs.warwick.ac.uk/~yulia/ __________________________________________

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Assistant Professor position available in Cognitive Sciences at the University of California, Irvine
by Jeff Krichmar Nov. 5, 2019

Nov. 5, 2019

Dear Colleagues, We are accepting applications for an Assistant Professor position in Cognitive Sciences at the University of California, Irvine up until December 1st, 2019. The Department of Cognitive Sciences has a long history of combining a wide range of experimental methods with computational modeling at multiple levels. UCI is consistently recognized as a trailblazer in a broad range of fields, garnering national and international honors in every school. Please consider applying. The official job posting is below: The Department of Cognitive Sciences at the University of California, Irvine (UCI) invites applications for an assistant professor (tenure-track) position with an expected start date of July 1, 2020. We are seeking scientists who study learning, memory, decision making, and related topics with behavioral, developmental, computational, artificial intelligence, or neuroimaging methods. Of particular interest are cognitive scientists who combine an empirical research program with innovative quantitative analysis or computational modeling. The successful candidates will interact with a dynamic and growing community in cognitive, computational, and neural sciences within the department (http://www.cogsci.uci.edu/) and the broader campus. Interested candidates can find specific application requirements and the online application at: https://recruit.ap.uci.edu/JPF05668. To ensure full consideration, applications must be completed by December 1, 2019. The University of California, Irvine is an Equal Opportunity/Affirmative Action Employer advancing inclusive excellence. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, age, protected veteran status, or other protected categories covered by the UC nondiscrimination policy. As a recipient of an NSF ADVANCE award for gender equity, UCI understands the needs of dual career couples, supports work-life balance through an array of family-friendly policies, and is dedicated to broadening participation in higher education. As a Minority Serving Institution, UCI seeks future faculty who will contribute to our enduring commitment to inclusive excellence and serve as role models. Best regards, Jeff Krichmar Department of Cognitive Sciences 2328 Social & Behavioral Sciences Gateway University of California, Irvine Irvine, CA 92697-5100 jkrichma(a)uci.edu http://www.socsci.uci.edu/~jkrichma

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5 year PhD Interdisciplinary Neuroscience PhD Program, Tuebingen
by Peter Dayan Nov. 5, 2019

Nov. 5, 2019

The Max Planck Institute for Biological Cybernetics and the University of Tübingen invite students from all over the world to apply for their interdisciplinary 5-year PhD program leading to a PhD in Neuroscience. Full funding will be available for top-ranked applicants. We are seeking talented, curious and open-minded young scientists with strong backgrounds in neuroscience, biomedical sciences, computational science, applied mathematics, statistics, artificial intelligence, or engineering. Successful candidates will possess a burning ambition to shape the future of neuroscience and the ability to thrive in a fast-paced, interdisciplinary, environment. The application deadline is December 15, 2019. Please visit: https://www.kyb.tuebingen.mpg.de/phd-program for more details and information about applying. The PhD program is a collaboration between the Max Planck Institute for Biological Cybernetics and the University of Tübingen. It is closely affiliated with the renowned Graduate Training Centre of Neuroscience, the centerpiece of neuroscience training in Tübingen. Students (who should have been awarded a Bachelor's degree by September 2020) will receive a broad interdisciplinary training in neuroscience, including expert teaching by international renowned scientists and individual and intensive mentoring. Potential research topics cover a variety of fields in systems neuroscience, cognitive and behavioral neuroscience, computational neuroscience, translational and clinical neuroscience as well as cellular and molecular neuroscience. Teaching and research are conducted in English.

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Two PhD/Postdoc positions in theory of neuromorphic computing, Groningen, Netherland
by Herbert Jaeger Nov. 5, 2019

Nov. 5, 2019

In the group of Herbert Jaeger two fully funded positions are open for PhD students (4 year contract) or Postdocs (3 year contract). Both positions are about formal, theoretical analyses and algorithmic models of „neuromorphic“ computing in non-digital hardware (analog, unclocked, spiking microchips or even unconventional material substrates exhibiting relevant nonlinear dyanmical phenomena). Herbert Jaeger’s group is embedded in the Groningen Cognitive Systems and Materials Center (CogniGron, https://www.rug.nl/research/fse/cognitive-systems-and-materials/?lang=en) CogniGron, founded in 2018, is an interdisciplinary initiative at the intersection of computer science, AI, machine learning, computational neuroscience and material science. With 10 new professorships and 30 PhD stipends, CogniGron stands out as one of the most visible scientific investments in the Netherlands in recent times. The *first position* is defined within the European H2020 project „Memory technologies with multi-scale time constants for neuromorphic architectures (MeM-Scales)“, whose central objective is to build (analog, spiking) neuromorphic microchips which can adapt to online input signals which display several or even many timescales. Since microchip physics will deliver only a few physical timescales, collective computational phenomena will have to be explored in order to realize the long-range memory timescales required by many tasks. Since at this point, numerous but hardly explored options are "in the air" for computational timescale management, this position offers much freedom to engage in original work. The *second position* is funded through university budgets and is independent of specific project demands. The position holder will enjoy unusual freedom, paired with intellectual risk, to contribute to the ultimate scientific goal of Jaeger’s group: a unifying formal theory of information processing in nonlinear dynamical systems - regardless of whether they are similar to biological brains, or rest on non-neural dynamical phenomena in novel material substrates. Obviously, such a unifying theory, which would play for neuromorphic computing a similarly central role as Turing computability theory plays for digital computing, is not in sight and may be even not possible. However, many mini-revolutions in mathematical description formats are possible, and needed. Each position will be filled by either a PhD student with a 4-year contract, or by a Postdoc with a 3-year contract. The only selection criterion is qualification (product of intellectual audacity, analytical thinking power, and relevant mathematical and factual knowledge). Groningen is a beautiful and welcoming city, the university sits in the top 100 in virtually all global ranking lists, and the salary is highly competitive. More detail can be found in the official job announcements on the website of the University of Groningen: First position: https://www.rug.nl/about-us/work-with-us/job-opportunities/?details=00347-0… (PhD version) https://www.rug.nl/about-us/work-with-us/job-opportunities/?details=00347-0… (Postdoc version) Second position: https://www.rug.nl/about-us/work-with-us/job-opportunities/?details=00347-0… (PhD version) https://www.rug.nl/about-us/work-with-us/job-opportunities/?details=00347-0… (Postdoc version) Please apply for at most one of these formal job announcements, following the instructions given at these weblinks. For pre-application inquiries please contact me directly by email (h.jaeger(a)rug.nl) Applications received before December 1 will be given full consideration; however, the positions will remain open until filled. The earliest (and desirable) starting date for both positions is January 1, 2020. -- Dr. Herbert Jaeger Professor of Computing in Cognitive Materials Rijksuniversiteit Groningen Faculty of Science and Engineering - CogniGron Bernoulliborg Nijenborgh 9, 9747 AG Groningen web: minds.jacobs-university.de

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Open position: MIT, Co-instructor and education support coordinator in computational neuroscience
by Ila Fiete Nov. 5, 2019

Nov. 5, 2019

Dear Colleagues, I would appreciate if you would pass along to appropriate candidates the following advertisement for an open position for a Co-instructor and education support coordinator in computational neuroscience at MIT. Apologies if you receive multiple postings. Best wishes, Ila Fiete ------------------------------------------------ COMPUTATION COURSE CO-INSTRUCTOR AND EDUCATION SUPPORT COORDINATOR, MIT Brain and Cognitive Sciences, to support the development and instruction of computational courses (85%) and provide assistance to the department as a whole on enhancing and evaluating the quality of its undergraduate course offerings (15%). The goal will be to integrate computational thinking skills across the Course 9 curriculum and in the new Computation and Cognition (Course 6-9) curriculum, and provide innovative training in the areas of computational neuroscience, neuroengineering, and human and machine intelligence. The main responsibility will be to develop learning content for MIT students in these areas, including instructional videos, tutorials, problem sets, demonstrations of basic neuroscience and data analysis methods. Will hold office hours and give in-class lectures as appropriate and provide feedback and guidance before and after a course launches to ensure a high-quality learning experience. Will also provide support to the department in enhancing and evaluating the undergraduate program broadly, including assisting with website content (e.g., videotapes of classroom instruction, faculty/student interactions, etc.) and coordinating with the Teaching and Learning Laboratory to evaluate the efficacy of the department’s approaches to improving undergraduate education; and perform other duties as requested. Job Requirements REQUIRED: Ph.D. in neuroscience, bioengineering, computational cognitive science or related/equivalent area; at least one year of teaching experience; proficiency with MATLAB and Python; excellent communication skills; and a demonstrated commitment to undergraduate education. Web publishing experience a plus; as is knowledge of Dreamweaver, Photoshop, InDesign, Fetch, and HTML coding. Job #17993. Link: https://careers.peopleclick.com/careerscp/client_mit/external/jobDetails/jo…

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Data Scientist Position at Boston University
by Chen, Jerry Nov. 5, 2019

Nov. 5, 2019

The Lab of Jerry Chen at Boston University is hiring a Data Scientist to be involved in several multi-year BRAIN Initiative related NIH and NSF funded projects. These projects focus on understanding cortical computation during behavior by combining large-scale population recordings, anatomical reconstructions, and transcriptional profiling as well as developing tools for large-scale and high-speed imaging of neuronal populations. This person will be involved in help to analyze experimental data, developing software tools to aid in the data analysis, and helping with data infrastructure and management. Specific Projects include: 1. Analysis of dense electron microscope reconstructions of neuronal connectivity (ie. Connectomics) 2. Establishing pipeline for image analysis for in situ sequencing of gene expression 3. Establishing pipeline for automated behavioral training and analysis. 4. Visualization and analysis of population imaging data across multiple brain areas during behavior. This person will be jointly involved and mentored by personnel from the Hariri Institute's Software & Application Innovation Lab (SAIL), a center with expertise in cutting-edge computational and data-driven research with tangible and direct impacts on academic research, public service, and industry partners in healthcare, finance, and technology. Qualifications: BA/BS degree (MA or PhD preferred) in Computer Science, Mathematics, Engineering, Neuroscience or related technical field. One to three years of academic or professional experience. Programming experience in MATLAB is required. Additional experience in Python, C++, or LABView is preferred. Extensive background in either computational neuroscience, image analysis, computer vision, or machine learning is preferred. If interested in applying, please submit a CV along with 3 references to jerry(a)chen-lab.org<mailto:jerry@chen-lab.org>.

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Post-doc on modeling neural circuit dynamics and homeostasis
by Jochen Triesch Nov. 5, 2019

Nov. 5, 2019

A 2-year post-doc position on modeling neural circuit dynamics and homeostasis is available at the Frankfurt Institute for Advanced Studies (https://fias.uni-frankfurt.de/en/) The project aims at better understanding how different plasticity mechanisms maintain neural circuits in healthy activity regimes suitable for information processing and how these mechanisms may break down in certain network disorders. We are also interested the role of non-neuronal cell types in the process. The project is jointly lead by Prof. Jochen Triesch and Prof. Peter Jedlicka. The successful candidate will have the possibility to work closely together with experimental labs from Frankfurt’s vibrant Neuroscience community. The project is funded through Frankfurt’s new Center for Personalized Translational Epilepsy Research (CePTER). Applications (single pdf file including CV, list of publications, statement of research interests and names and email addresses of three references) should be sent to jedlicka(a)em.uni-frankfurt.de and triesch(a)fias.uni-frankfurt.de. The ideal candidate will have obtained a PhD/Master Degree in Computational Neuroscience or closely related field and have a strong interest in applying their knowledge to problems of medical relevance. A strong background in either neural mass models or spiking neural network models or compartmental modeling is expected. Experience in modeling epilepsy, neural plasticity and neuroimmune interactions is a plus. Review of applications will begin immediately and continue until the position has been filled. -- Prof. Dr. Jochen Triesch Johanna Quandt Research Professor Frankfurt Institute for Advanced Studies http://fias.uni-frankfurt.de/~triesch/ Tel: +49 (0)69 798-47531 Fax: +49 (0)69 798-47611

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Ten Years Reproducibility Challenge / ReScience special issue
by Nicolas Rougier Nov. 4, 2019

Nov. 4, 2019

Dear all, We’ve just launched the "Ten Years Reproducibility Challenge” whose goal is to try to compile & run your old code (> 10 years) that accompanied one of your published article or preprint (details below). More information at: https://github.com/ReScience/ten-years/ Deadline for submission: 01/04/2020 Nicolas Rougier --- Did you ever try to run an old code that you wrote for a scientific article you published years ago? Did you encounter any problems? Were you successful? We are curious to hear your story. This is the reason why we are editing a special issue of ReScience to collect these stories. The ten years reproducibility challenge is an invitation for researchers to try to run the code they've created for a scientific publication that was published more than ten years ago. This code can be anything (statistical analysis, numerical simulation, data processing, etc.), can be written in any language and can address any scientific domain. The only mandatory condition to enter the challenge is to have published a scientific article before 2010, in a journal or a conference with proceedings, which contains results produced by code, irrespectively of whether this code was published in some form at the time or not. Note that we do not ask you to write a new version of your old code. We ask you instead to try to make your old code to run on modern hardware/software (with minimal modifications) in order to check if you can obtain the exact same results that were publised at least ten years ago. Sounds easy? We have good reasons to think this might be more difficult than you think. And maybe the first problem you'll have to solve is to find your own source code. More information at: https://github.com/ReScience/ten-years/

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COMPUTATIONAL NEUROSCIENCE MODELER FOR PAIN PROJECT
by Hugo-Geerts＠In-Silico-Biosciences.com Nov. 3, 2019

Nov. 3, 2019

Do you want to make a difference in the life of patients suffering from chronic pain? Are you motivated to help solving the opioid epidemic? In Silico Biosciences (www.in-silico-biosciences.com) a pioneer in Quantitative Systems Pharmacology (QSP) for R&D in CNS diseases has openings for computational neuroscientists. The fully funded European Pain project (duration 3.5 years with start in early 2020) aims to develop an actionable biophysically realistic computer model of the relevant human neuronal circuits for analgesia, sedation, cognitive impairment, and substance abuse liability for opioids. These models will be integrated in an existing QSP platform for the introduction of approved therapeutic medications based on their pharmacological properties for combination therapy. The models will be developed based on preclinical knowledge combined with human neurophysiology and imaging studies of relevant neuronal circuits, will be calibrated using biomarkers and therapeutic interventions in human patients and predictions will be tested in preclinical models and in clinical studies. This is an unique opportunity to work in a world-class multi-disciplinary consortium ranging from preclinical studies over computer modeling of pharmacological interventions to clinical studies and at the same time pursuing a meaningful outcome for patients. The platform is based on NEURON software. The positions are at both post-doc and graduate student level, with the opportunity to pursue a PhD and can be embedded in the Leiden-Amsterdam Center for Drug Research in Leiden, the Netherlands. However, alternative locations and flexible remote working arrangements can be considered depending on individual circumstances. Salary is commensurate with experience. Please send your CV, covering letter and the names of two references to Hugo-Geerts(a)In-Silico-Biosciences.com

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15 funded PhD Positions in Neuroscience | IMPRS for Brain and Behavior
by Ezgi Bulca Oct. 31, 2019

Oct. 31, 2019

15 fully-funded PhD Positions in Neuroscience | IMPRS (International Max Planck Research School) for Brain and Behavior Bonn, Germany & Jupiter, Florida (USA) Looking for a PhD position in neuroscience? Apply to our fully-funded, international PhD program in the Max Planck Society! IMPRS for Brain and Behavior is a transatlantic collaboration between the Max Planck associated caesar in Bonn and the University of Bonn, along with the USA partners Max Planck Florida Institute for Neuroscience (MPFI) and Florida Atlantic University. The Projects More than 40 labs with an enormous variety of research projects are seeking outstanding PhD candidates to join their research. See our website (https://www.imprs-brain-behavior.org/research/faculty/) for further information on our faculty and possible doctoral projects. Successful candidates will work in a young and dynamic, interdisciplinary, international environment, embedded in the local scientific communities in Bonn or Jupiter. Your Profile Highly qualified and motivated aspiring PhD student from any nationality. Proven track record of academic and research excellence. Bachelor's or Master's degree (or equivalent) in life sciences, physics, mathematics, computer science, engineering, or other relevant subject. Fluency in written and spoken English. Research experience is of advantage. Our Offer Immersion in a stimulating scientific culture of interaction and international cooperation. State-of-the art facilities with novel scientific technologies and advanced infrastructure. Dedicated support and mentoring personnel. Competitive salary funded for the whole duration of studies and no tuition fees. We are committed to diversity and equal opportunity for all applicants. Application deadline: December 1, 2019 https://www.imprs-brain-behavior.org/admissions/application-info/ You will need: CV, letter of motivation, contact info for 2 referees, academic certificates and transcripts. Only online applications accepted. Short-listed candidates will be interviewed in February-March. Positions must be started within 6 months of selection. All the best, Ezgi Bulca Ezgi Bulca IMPRS for Brain & Behavior Coordinator phone +49/228/9656-318 e-mail: ezgi.bulca(a)caesar.de<mailto:ezgi.bulca@caesar.de> www.imprs-brain-behavior.mpg.de research center caesar center of advanced european studies and research an associate of the Max Planck Society Ludwig-Erhard-Allee 2 53175 Bonn, Germany www.caesar.de<http://www.caesar.de/>

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CFP: 3rd Conference of Consciousness Research Network at NYU Shanghai
by Ryota Kanai Oct. 30, 2019

Oct. 30, 2019

Conference dates and venue: April 3-5, 2020, NYU Shanghai, Rooms 1502-1505 CFP deadline: December 15, 2019 Result notification: January 31, 2020 Consciousness Research Network (CoRN <https://www.conresnet.org/>) is a network that aims at connecting researchers in the fields of philosophy, neuroscience, psychology, cognitive science, biology, and related fields to deepen our understanding of the nature of consciousness. It also seeks to facilitate collaborations on interdisplinary projects. The 1st and 2nd conferences of CoRN were held in Taipei (November 2017) and Okazaki (January 2019), and were huge successes. We would like to invite submissions of abstracts to be presented at the 3rd Meeting of CoRN to be held April 3-5 at NYU Shanghai. Please submit an abstract no longer than 300 words to the submission site <https://www.conresnet.org/abstract-submission8203.html>. Submissions will be refereed and selected as talks or posters based on quality and relevance to CoRN. If you have any questions about the conference, please contact Lu Teng at lt77(a)nyu.edu Here is a list of confirmed speakers: Tim Bayne (Monash University, Australia) Domenica Bueti (SISSA – International School for Advanced Studies, Italy) Acer Chang (Araya, Inc., Japan) Amit Chaturvedi (University of Hong Kong, Hong Kong) Juan Chen (South China Normal University, China) Tony Cheng (National Chengchi University, Taiwan) Colin Klein (Austrialian National University, Australia) Sze Chai Kwok (East China Normal University, China) Luo Liang (Beijing Normal University, China) Ying-Tung Lin (National Yang-Ming University, Taiwan) Kengo Miyazono (Hiroshima University, Japan) Pengmin Qin (South China Normal University, China) Shinsuke Shimojo (Caltech, USA) Chen Song (Cardiff University, UK) Lu Teng (NYU Shanghai, China) Xiaohong Wan (Beijing Normal University, China) Masataka Watanabe (The University of Tokyo, Japan) Makiko Yamada (QST, Japan) Xilin Zhang (South China Normal University, China) Local organizing committee: Acer Chang (Araya, Inc., Japan) Ryota Kanai (Araya, Inc., Japan) Sze Chai Kwok (East China Normal University) Lu Teng (NYU Shanghai)

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Postdoctoral positions in invasive human neurophysiology (Dr. Pouratian’s lab)
by Mahsa Malekmohammadi Oct. 30, 2019

Oct. 30, 2019

Three postdoctoral research positions are immediately available at the UCLA Neurosurgical Brain Mapping and Restoration Lab (NBMRL), under the direction of Dr. Nader Pouratian in the UCLA Department of Neurosurgery. We are seeking individuals with interest in any of the following areas: (1) pathophysiology of Parkinson disease (2) therapeutic mechanisms of deep brain stimulation (3) network basis of anesthesia and consciousness (4) biophysics of visual cortex stimulation. These NIH-funded positions are outstanding opportunities to receive training and develop innovative research projects in a highly productive and cutting-edge research program. The successful candidates are expected to be team players and collaborate closely with other team members (both within UCLA and across our collaborative multi-site network) to develop and validate data acquisitions and behavioral testing and advanced image and signal analyses and interpretation. The candidates are also expected to report, through oral presentation and written reports/papers, algorithms and experimental findings. In addition, opportunities to develop research proposals under direct mentorship from the PI will be provided. Candidates with a Ph.D. in Computational Neuroscience, Engineering, Physics, Mathematics or Data Science, an excellent research record, and a drive to work independently and collaboratively to solve conceptual and computational challenges are encouraged to apply. A strong quantitative and theoretical skillset is a must, prior experience in biomechanical modeling, cognitive sciences or neuroscience, and a background in relevant modeling and analysis of behavioral or neurophysiological data are a plus. Excellent written and oral English communication skills and proven ability to conduct high-quality research evidenced by first-author publications are required. Previous experience with human scalp-or intracranial EEG, animal intracranial electrophysiology, or advanced MRI analysis is preferred. Interested candidates should contact *Dr. Nader Pouratian* at *npouratian(a)mednet.ucla.edu <npouratian(a)mednet.ucla.edu>* and submit a letter of interest, CV, and at least 2 references. -- *Mahsa Malekmohammadi, PhD* Visiting Assistant Professor Department of Neurosurgery University of California, Los Angeles 300 Stein Plaza, Suite 562 Los Angeles, CA 90095 Email: mmalekmohammadi(a)mednet.ucla.edu Office: (310) 206-9187

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an educational review on time delay systems
by Claudius Gros Oct. 30, 2019

Oct. 30, 2019

Dear All Time delays are ubiquitous in the brain. To this regard we would like to point out a new introductory review, Chaos in time delay systems, an educational review by H. Wernecke, B. Sandor, C. Gros Physics Reports 824, 1-40 (2019). https://www.sciencedirect.com/science/article/abs/pii/S0370157319302601 abstract -------- The time needed to exchange information in the physical world induces a delay term when the respective system is modeled by differential equations. Time delays are hence ubiquitous, being furthermore likely to induce instabilities and with it various kinds of chaotic phases. Which are then the possible types of time delays, induced chaotic states, and methods suitable to characterize the resulting dynamics? This review presents an overview of the field that includes an in-depth discussion of the most important results, of the standard numerical approaches and of several novel tests for identifying chaos. Special emphasis is placed on a structured representation that is straightforward to follow. Several educational examples are included in addition as entry points to the rapidly developing field of time delay systems. table of contents ----------------- 1 Introduction 1.1 Time delays in theory and nature 1.2 Outline 1.3 States and state histories 1.4 Lyapunov exponents 1.4.1 Local Lyapunov exponents 1.4.2 Global and maximal Lyapunov exponents 1.4.3 Global Lyapunov exponents for maps 1.5 Educational example: Stability of a fixed point 1.5.1 Analytic ansatz for local Lyapunov exponents 1.5.2 Euler map 2 Types of time delay systems 2.1 Single constant time delay 2.2 Multiple constant time delays 2.3 Time-varying delay 2.4 State-dependent delay 2.5 Conservative vs. dissipative delay 2.6 Distribution of delays 2.7 Reducible time delay systems 2.8 Neutral delay systems 2.9 Networks with delay coupling 2.10 Long time delays 3 Characterizing the dynamics of time delay systems 3.1 Fixed points 3.2 Types of chaotic motion 3.2.1 Delay induced chaos 3.2.2 Partially predictable chaos 3.2.3 Weak and strong chaos 3.2.4 Intermittent and laminar chaos 3.2.5 Transient chaos 3.3 Lyapunov spectrum 3.4 Lyapunov prediction time 3.5 Phase space contraction rate 3.6 Poincaré section 3.7 The power spectrum of attractors 3.8 The dimension of attractors 3.8.1 Mori dimension 3.8.2 Kaplan-Yorke dimension 3.8.3 Fractal dimension 3.8.4 Correlation dimension 3.9 Binary tests for identifying chaos 3.9.1 Cross-distance scaling exponent 3.9.2 Gottwald-Melbourn test 3.10 Space-time interpretation of time delay systems 4 Numerical treatment 4.1 Numerical integration 4.1.1 Euler algorithm 4.1.2 Euler integration as a discrete map 4.1.3 Explicit Runge-Kutta algorithms 4.2 Lyapunov exponents 4.2.1 Maximal Lyapunov exponent from two diverging trajectories 4.2.2 Benettin’s algorithm 4.2.3 Extracting Lyapunov exponents from the Euler map 5 Conclusions ### ### Prof. Dr. Claudius Gros ### http://itp.uni-frankfurt.de/~gros ### ### Complex and Adaptive Dynamical Systems, A Primer ### A graduate-level textbook, Springer (2008/10/13/15) ### ### Mageia, das Buch der Farben ### http://www.buchderfarben.de ### ### Life for barren exoplanets: The Genesis project ### https://link.springer.com/article/10.1007/s10509-016-2911-0 ###

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Modeller’s Workshop for the Brain Dynamics Toolbox. Nov 1-22, 2019.
by Stewart Heitmann Oct. 29, 2019

Oct. 29, 2019

Modeller’s Workshop for the Brain Dynamics Toolbox Online Course Nov 1-22, 2019 The Brain Dynamics Toolbox is an open toolbox for simulating dynamical systems in neuroscience. This on-line course is for researchers, students and instructors who wish to use the toolbox to build their own dynamical models. Participants learn the art of programming differential equations in Matlab and how to use the toolbox to solve those equations interactively. Topics include programming Ordinary Differential Equations, Partial Differential Equations, Delay Differential Equations, Stochastic Differential Equations, Auxiliary Plot Functions and command-line tools. Example code is provided in all cases. Course Website https://bdtoolbox.org/p/modellers-workshop/ Important Dates Enrolments open Friday 1st Nov, 2019. Enrolments close Friday 22nd Nov, 2019. Stewart Heitmann | Computational Scientist Victor Chang Cardiac Research Institute | Lowy Packer Building | 405 Liverpool St, Darlinghurst NSW 2010 Australia E: s.heitmann(a)victorchang.edu.au | @VictorChangInst ______________________________________________________________________ The Victor Chang Cardiac Research Institute's Email is scanned by the MessageLabs Email Security System.

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18 month Post-doc position coordinated by Laurent Perrinet, supported by INT (Marseille, France) and Yves Frégnac (UNIC-NeuroPSI, Gif)
by Laurent Perrinet Oct. 29, 2019

Oct. 29, 2019

Dear colleagues, Applications are welcome for a post-doctoral position at INT in Marseille, France. Your mission will be to explore novel visual computations using spatio-temporal diffusion kernels and traveling waves. The project is funded by the ANR Horizontal V1 grant (ANR-17-CE37-0006) from the French National Research Agency (ANR) and will be coordinated by Laurent Perrinet, in collaboration with Lyle Muller and Frédéric Chavane at INT and Yves Frégnac and Jan Antolik at UNIC-NeuroPSI, Gif. We are seeking candidates with a strong background in machine learning, computer vision and computational neuroscience. For more information, visit https://laurentperrinet.github.io/post/2019-10-28_postdoc-position. The starting date is set to January 6th, 2020 but can be flexibly extended. To obtain further information or send applications (including a full CV, a letter of motivation, 2 reference names), please contact me @ Laurent.Perrinet(a)univ-amu.fr. The appointment is for 18 month. Applications are welcome immediately and until the end of year 2019. Thanks for distributing this announcement to potential candidates! Laurent -- Laurent Perrinet - INT (UMR 7289)/CNRS https://laurentperrinet.github.io/

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Postdoctoral position(s) available at the University of Pittsburgh
by Williamson, Ross S Oct. 28, 2019

Oct. 28, 2019

Dear all, Apologies for the cross-posting. Postdoctoral position(s) investigating the organization and function of auditory corticofugal projection systems in behaving mice are available in the Williamson Laboratory at the University of Pittsburgh. Details on the research focus and approaches of the laboratory can be found here: https://www.williamsonlaboratory.com/research/ Applicants must have a PhD in Neuroscience or a relevant field and must be eligible for employment in the US. We are looking for individuals with an excellent record of research achievements and expertise at the intersection of two or more of the following areas: electrophysiology, two-photon imaging, quantitative behavior, and computational neuroscience. Applications will continue until the position is filled. The Williamson Laboratory is the newest member of the Pittsburgh Hearing Research Center at the University of Pittsburgh. The lab is embedded within the Departments of Otolaryngology and Neurobiology, and affiliated with the Center for Neuroscience (CNUP) and the Center for the Neural Basis of Cognition (CNBC). Postdoctoral fellows will be part of a highly supportive and diverse research environment with excellent career development opportunities. The University of Pittsburgh was ranked third in terms of total NIH funding received in 2018. The Global Liveability Index (The Economist) recently ranked Pittsburgh as the second most livable city in America. Interested candidates should email a brief statement of research interests, a CV, and the names and contact information of three references to Dr. Ross Williamson (rsw(a)pitt.edu<mailto:rsw@pitt.edu>). The positions will remain open until filled. Regards, Ross --------------------------------------------------------------------------------------- Ross S. Williamson, Ph.D. | Assistant Professor | Otolaryngology Pittsburgh Hearing Research Center | University of Pittsburgh Biomedical Science Tower | W1448 www.williamsonlaboratory.com<http://www.williamsonlaboratory.com>

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Luminous Workshop on Consciousness - University of Oxford - Call for Participation
by Aureli Soria Frisch Oct. 28, 2019

Oct. 28, 2019

————————————————— Luminous Workshop on Consciousness ————————————————— Call for Participation Neuroscience researchers interested in the field of Consciousness are warmly invited to participate in the Luminous workshop “Studying, Measuring and Altering Consciousness” to be held 21st November 2019 in Merton College, University of Oxford. Luminous (http://www.luminous-project.eu/ <http://www.luminous-project.eu/> ) is a H2020 project funded under the FET Open program of the EU. The Luminous workshop is an open discussion on following topics: • Fundamental aspects, including theories of consciousness • Neurobiological mechanisms and correlates of consciousness • Models, simulations and emulation of consciousness • Clinical, ethical and societal implications of consciousness research • Techniques for consciousness alteration The workshop includes: • Invited Talks by Anil Seth, Hector Zenil, Claire Sergent, and Morten Kringlebach; • Latest advances in Luminous by consortium members Marcello Massimini, Katie Warnaby, Giulio Ruffini, Silvia Casarotto, Michael Nitsche, Aurore Thibaut, Niels Birbaumer, Julien Modolo, Aureli Soria-Frisch; • Peer-reviewed Flash Talks and Poster Presentations. For further details on the schedule please visit http://www.luminous-project.eu/index.php/workshop-studying-measuring-and-al… <http://www.luminous-project.eu/index.php/workshop-studying-measuring-and-al…> Registration to the meeting at: https://www.oxforduniversitystores.co.uk/short-courses/nuffield-department-… <https://www.oxforduniversitystores.co.uk/short-courses/nuffield-department-…> The Luminous workshop includes a public lecture that needs an additional registration. More details in the web site. Hoping to see you in Oxford, we send you in the meantime our kindest greetings, Organising committee: Katie Warnaby & Jostein Holmgren, University of Oxford; Aureli Soria-Frisch & Eleni Kroupi, Starlab; Julia Moser & Hubert Preissl, University of Tubingen

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Research Fellow in Computational Neuroscience, University of Warwick, UK
by Timofeeva, Yulia Oct. 26, 2019

Oct. 26, 2019

Research Fellow in Computational Neuroscience Department of Computer Science, University of Warwick, UK Fixed Term Contract for 3 years from 1 January 2020. The appointee will work on a project funded by the MRC that aims to develop and implement a mechanistic modelling framework for studying regulation of synaptic transmitter release in health and disease. This project will be led by Dr Yulia Timofeeva with the co-applicant Prof Kirill Volynski (UCL Queen Square Institute of Neurology, London) and in close collaboration with a number of world-leading experimental laboratories working in the field of synaptic transmission and information processing in the brain, that are located in Europe, USA, Canada and Japan. The successful candidate should have a PhD, or equivalent, in applied mathematics/theoretical physics/computer science or a related discipline and should have excellent skills in scientific computing. Previous experience of research in computational biology or neuroscience is desirable. The working environment will be in the Mathematical Science Building, in the Zeeman Institute for Systems Biology & Infectious Disease Epidemiology Research (SBIDER, https://warwick.ac.uk/fac/cross_fac/zeeman_institute/) For further details see https://www.dcs.warwick.ac.uk/~yulia/job_102287_109.html https://warwick.ac.uk/fac/sci/dcs/jobs/ Deadline for applications: 21 November 2019 -- __________________________________________ Dr Yulia Timofeeva Associate Professor Department of Computer Science and Centre for Complexity Science Warwick, UK Honorary Associate Professor UCL, Institute of Neurology London, UK Tel: 024 765 73786 http://www.dcs.warwick.ac.uk/~yulia/ __________________________________________

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COSYNE 2020: Abstract submission closes soon; Registration opens
by Tomas Hromadka Oct. 26, 2019

Oct. 26, 2019

==================================================== Computational and Systems Neuroscience 2020 (Cosyne) MAIN MEETING 27 February - 01 March 2020 Denver, Colorado WORKSHOPS 02 March - 03 March 2020 Breckenridge, Colorado www.cosyne.org ==================================================== IMPORTANT DATES Abstract submission closes soon! Abstract submission deadline: 31 October 2019 Workshop proposal deadline: 10 November 2019 Cosyne registration opens: 11 November 2019 ---------------------------------------------------- COSYNE ---------------------------------------------------- The annual Cosyne meeting provides an inclusive forum for the exchange of empirical and theoretical approaches to problems in systems neuroscience, in order to understand how neural systems function. The MAIN MEETING is single-track. A set of invited talks is selected by the Executive Committee, and additional talks and posters are selected by the Program Committee, based on submitted abstracts. The WORKSHOPS feature in-depth discussion of current topics of interest, in a small group setting. For details on workshop proposals please see below or visit Cosyne.org -> Workshops. Cosyne topics include but are not limited to: neural basis of behavior, sensory and motor systems, circuitry, learning, neural coding, natural scene statistics, dendritic computation, neural basis of persistent activity, nonlinear receptive field mapping, representations of time and sequence, reward systems, decision-making, synaptic plasticity, map formation and plasticity, population coding, attention, and computation with spiking networks. This year we would like to foster increased participation from experimental groups as well as computational ones. Please circulate widely and encourage your students and postdocs to apply. When preparing an abstract, authors should be aware that not all abstracts can be accepted for the meeting, due to space constraints. Abstracts will be selected based on the clarity with which they convey the substance, significance, and originality of the work to be presented. COSYNE INVITED SPEAKERS Matthew Botvinick (Deepmind/Princeton) Megan Carey (Champalimaud) John Cunningham (Columbia) Gul Dolen (Hopkins) Rainer Friedrich (FMI Basel) Sam Gershman (Harvard) Lisa Giocomo (Stanford) Christopher Harvey (Harvard) Mehrdad Jazayeri (MIT) Wei Ji Ma (NYU) Hendrikje Nienborg (Tuebingen/NIH) Linda Wilbrecht (Berkeley) Marta Zlatic (Janelia) ORGANIZING COMMITTEE General Chairs: Eugenia Chiappe (Champalimaud) and Christian Machens (Champalimaud) Program Chairs: Anne-Marie Oswald (U Pittsburgh) and Srdjan Ostojic (Ecole Normale Superieure Paris) Workshop Chairs: Catherine Hartley (NYU) and Blake Richards (McGill) Undergraduate Travel Chairs: Angela Langdon (Princeton) and Robert Wilson (U Arizona) Diversity Chairs: Eva Dyer (Georgia Tech, Emory) and Eric Shea-Brown (U Washington) Publicity Chair: Adam Calhoun (Princeton) Development Chair: Michael Long (NYU) EXECUTIVE COMMITTEE Stephanie Palmer (U Chicago) Zachary Mainen (Champalimaud) Alexandre Pouget (U Geneva) Anthony Zador (CSHL) CONTACT meeting [at] cosyne.org ----------------------------------------------------------------------- CALL FOR WORKSHOP PROPOSALS ----------------------------------------------------------------------- WORKSHOP PROPOSAL DEADLINE: 10 November 2019 A series of workshops will be held after the main Cosyne meeting. The goal is to provide an informal forum for the discussion of important research questions and challenges. Controversial issues, open problems, comparisons of competing approaches, and alternative viewpoints are encouraged. The overarching goal of all workshops should be the integration of empirical and theoretical approaches, in an environment that fosters collegial discussion and debate. - There will be 4-8 workshops/day, running in parallel. - Each workshop is expected to draw between 15 and 80 people. - The workshops will be split into morning (8.00-11.00 AM) and afternoon (4.30-7.30 PM) sessions. - Workshops will be held in Breckenridge, CO, a ski village 80 miles west of Denver. Buses from the main conference will be provided. - Workshop speakers do *not* receive free registration, travel expenses, or accommodation for either the main meeting or the workshop sessions. Organizers should let invited speakers know that they are expected to pay for workshop registration fees Workshop organizer responsibilities include coordinating workshop participation and content, scheduling all speakers, submitting a final schedule for the workshop program, and moderating the discussion. Organizers can, but need not, be speakers. One complimentary (free) organizer registration is provided per workshop. For workshops with two organizers, the free registration can be given to one of the organizers or split evenly between them. Any required multimedia resources beyond a projector, screen, and microphones will be the responsibility of the workshop organizers to coordinate with Cosyne and Breckenridge staff. EVALUATION CRITERIA As stated above, the goal of Cosyne workshops is to provide an interactive, informal forum for discussions. Relevant topics include, but are not limited to: sensory processing; motor planning and control; functional neural circuits; motivation, reward and decision making; learning and memory; adaptation and plasticity; neural coding; neural circuitry and network models; and methods in computational or systems neuroscience. Workshop proposals will be evaluated by the Cosyne Workshop Chairs, and a subset of the proposals will be selected. The proposals will be evaluated according to the following six metrics (which will be weighted equally): 1. Relevance to the Cosyne community 2. Integration of experimental and theoretical issues 3. Current interest in the topic in the scientific community 4. Potential for new research directions and interactions to emerge 5. Distinctive scope/approach compared to other workshops (including previous years’) 6. Diversity and equity in the proposed speakers PROPOSALS should include: - Name(s) and email address(es) of the organizers (no more than 2 organizers per session, please). A primary contact should be designated. - A title. - A brief description of 1) what the workshop will address and accomplish, 2) why the topic is of interest, 3) who is the targeted group of participants. - List of confirmed speakers and names of potential invitees. Preference will be given to workshops with confirmed speakers. - Proposed workshop length (1 or 2 days). Most workshops will be limited to a single day. If you think your workshop needs two days, please explain why. - A brief resume of the workshop organizer(s) along with a short list of workshop-relevant publications (about half a page total). Experience has shown that the best discussions during a workshop are those that arise spontaneously. A good way to foster these is to have short talks and long question periods (e.g. 30+15 minutes), and have plenty of breaks. We recommend keeping the number of talks small (i.e., fewer than 10 talks per day). WORKSHOP COSTS Detailed registration costs, etc, will be available at www.cosyne.org. Please note: Cosyne does NOT provide travel funding for workshop speakers. Organizers should let invited speakers know that they are expected to pay for workshop registration fees. Participants are encouraged to register early, in order to qualify for discounted registration rates. One complimentary (free) organizer registration is provided per workshop. For workshops with 2 organizers, the free registration can be given to one of the organizers or split evenly between them. COSYNE 2020 WORKSHOP CHAIRS Catherine Hartley (NYU) and Blake Richards (McGill) QUESTIONS email: workshops [at] cosyne.org COSYNE MAILING LISTS Please consider adding yourself to Cosyne mailing lists (groups) to receive email updates with various Cosyne-related information and join in helpful discussions. See Cosyne.org -> Mailing lists for details.

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Independent Postdoctoral Opportunity at Harvard: The George F. Carrier Fellowship
by Cengiz Pehlevan Oct. 24, 2019

Oct. 24, 2019

Dear colleagues, Harvard has an independent postdoctoral position in widely applied mathematics, the George F. Carrier Fellowship. One of the areas of interest is computational neuroscience, details below. The application deadline for full consideration is Nov 15th, 2019. Please encourage qualified candidates to apply. Thank you in advance for your help. Best wishes, Cengiz —————— The Harvard John A. Paulson School of Engineering and Applied Sciences at Harvard University seeks applicants for an endowed honorific postdoctoral position in widely applied mathematics, the George F. Carrier* Fellowship, with an expected start date of September 1, 2020. The normal duration of the Carrier Fellow appointment is two years, with a potential extension to a third year, at an annual salary of $65,000. In addition, Carrier Fellows receive an annual allocation of $6,000 for research and travel expenses. We are looking for applicants interested in an opportunity for independent research that reflects the spirit of George Carrier’s approach and complements that of the current faculty in Applied Mathematics, broadly interpreted, including those in the Harvard Paulson School, the Department of Physics and elsewhere at the University. Current faculty interests are in applied mathematics in biological, earth science, engineering and physical contexts, and especially in soft materials, biophysics and neuroscience. For more information, see http://www.seas.harvard.edu/applied-mathematics <http://www.seas.harvard.edu/applied-mathematics> Candidates are required to have a doctorate or terminal degree in Applied Mathematics, Physics or a related area by the expected start date. Required application documents include a cover letter, statement of research interests, a CV (including a list of publications), and names and contact information for three references. We encourage candidates to apply by November 15, 2019, but applications will be accepted until the position is filled. Please apply through https://academicpositions.harvard.edu/postings/9368 <https://academicpositions.harvard.edu/postings/9368> Harvard is an equal opportunity employer and all qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability status, protected veteran status, or any other characteristic protected by law. *George Carrier (1919-2002) was the T. Jefferson Coolidge Professor of Mathematics at Harvard, and one of the pre-eminent applied mathematicians of his generation. He had a special talent for describing complicated physical phenomena mathematically, and did so with great facility over a wide range of problems that included fluid dynamics, elasticity, combustion and natural hazards. For more see information, see http://www.news.harvard.edu/gazette/2002/03.21/08-carrier.html <http://www.news.harvard.edu/gazette/2002/03.21/08-carrier.html> -----------

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Gatsby Unit PhD Programme
by Maneesh Sahani Oct. 24, 2019

Oct. 24, 2019

Gatsby Unit PhD: Training in theoretical and computational neuroscience and machine learning. Deadline: 17th November 2019 The Gatsby Computational Neuroscience Unit is a leading research centre focused on theoretical neuroscience and machine learning. We study unsupervised, supervised and reinforcement learning in brains and machines; inference, coding and neural dynamics; Bayesian and kernel methods, and deep learning; with applications to the analysis of perceptual processing and cognition, neural data, signal and image processing, machine vision, network data and nonparametric hypothesis testing. The Unit provides a unique opportunity for a critical mass of theoreticians to interact closely with each other, with the Sainsbury Wellcome Centre for Neural Circuits and Behaviour (SWC, with which we share a purpose-designed building), with the cross-faculty Centre for Computational Statistics and Machine Learning (CSML), and with other world-class research groups in related departments at UCL including: Computer Science; Functional Imaging; Neuroscience, Physiology and Pharmacology; Psychology; Neurology; Ophthalmology; The Ear Institute; Statistical Science; and the nearby Alan Turing and Francis Crick Institutes. Students at the Gatsby Unit complete a four-year PhD in either machine learning or theoretical neuroscience, with minor emphasis in the complementary field. Courses in the first year, taught in conjunction with colleagues from the SWC and CSML, provide a comprehensive and intensive introduction to both fields. Students are encouraged to work and interact closely with peers and faculty in the SWC and/or CSML throughout their PhD, providing a uniquely multidisciplinary research environment. Applicants should have a strong analytical and quantitative background, a keen interest in neuroscience, machine learning or both, and a relevant first degree, for example in Computer Science, Engineering, Mathematics, Neuroscience, Physics, Psychology or Statistics. Full funding is available regardless of nationality and current residence. The Unit also welcomes applicants who have secured or are seeking funding from other sources. Applications (including a CV, transcripts, statement of research interests, and letters from three referees) should be sent directly to admissions(a)gatsby.ucl.ac.uk. Only applications complete by the deadline are guaranteed full consideration; late applications will be entertained only if places remain unfilled. For further details of our programme and how to apply please see: http://www.gatsby.ucl.ac.uk/teaching/phd Further details of research interests are available from http://www.gatsby.ucl.ac.uk/research.html and the individual faculty webpages at http://www.gatsby.ucl.ac.uk/Members.html. -- Maneesh Sahani, Ph.D. Professor of Theoretical Neuroscience and Machine Learning, Director, Gatsby Computational Neuroscience Unit UCL, 25 Howland Street, London W1T 4JG

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Faculty positions at Imperial College London
by Schultz, Simon R Oct. 24, 2019

Oct. 24, 2019

Dear all, Please see below for this year's job round in the Department of Bioengineering at Imperial College London. While the positions are open with respect to area, I'd particularly like to encourage applications in the (broadly defined) area of neurotechnology. Location: London Salary: Internationally competitive Hours: Full Time Contract Type: Permanent Placed On: 24th October 2019 Closes: 17th November 2019 Job Ref: ENG01048 Are you seeking an academic appointment in bioengineering in a department which is leading the bioengineering agenda both nationally and internationally? If so, then this exciting, challenging and rewarding opportunity may be the next career step for you. Due to rapid growth and the strategic importance of the discipline of bioengineering at Imperial, the major new translational White City Campus, the flagship Michael Uren Biomedical Engineering Research Hub and national Dementia Research Institute Care Research & Technology Centre, the Department of Bioengineering wishes to appoint multiple outstanding academics at Lecturer or Senior Lecturer level. We invite applications from candidates across all areas of bioengineering, highlighting those that are synergistic with the research centres in our new translational campus: * Dementia Research Institute Care Research & Technology Centre, * Musculoskeletal Medical Engineering Centre, * Neuromuscular Rehabilitation Technology, * Cardiovascular Engineering, and * Wound Healing and Regeneration. Imperial College London is one of the world’s leading engineering focused universities and its mission is to achieve enduring excellence in both research and education, and we are committed to making life changing advancements for the benefit of society. The Department of Bioengineering is committed to this mission through advancing the frontiers of our knowledge, translating that knowledge for societal benefit, and educating leaders in the discipline’s three main areas: * BIOMEDICAL ENGINEERING (developing devices, techniques and interventions for human health) * BIOLOGICAL ENGINEERING (solving problems related to the life sciences and their applications for health) * BIOMIMETICS (using the structures and functions of living organisms as models for the design and engineering of materials and machines). In the most recent national research assessment, 95% of the Department's returned research was judged either world leading or internationally excellent and in the National Student Survey (2017) we achieved 97% overall student satisfaction. We are committed to building on this success through the recruitment of talented academic staff. We welcome applications from underrepresented groups such as female applicants. The posts will be based either at the South Kensington Campus or at the White City Campus, dependent on research area and facility requirements, on a full time, open ended basis. The departmental research activities may be found at: www.imperial.ac.uk/bioengineering<http://www.imperial.ac.uk/bioengineering> Closing Date: 17 November 2019 For an informal discussion please contact the Head of Department, Professor Anthony Bull - email: a.bull(a)imperial.ac.uk<mailto:a.bull@imperial.ac.uk> or telephone: 020 7594 5186. For further assistance, please contact Angela Glyes – email: a.glyes(a)imperial.ac.uk<mailto:a.glyes@imperial.ac.uk>. -- Simon R Schultz Professor of Neurotechnology Department of Bioengineering, Imperial College London South Kensington, London SW7 2AZ, UK Neural Coding Laboratory: http://www.schultzlab.org Director, Imperial College Centre for Neurotechnology Administrator: Dr Kate Hobson, Phone: +44 207 594 5101 http://www.imperial.ac.uk/neurotechnology

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Postdoctoral position in Computational Neuroscience, University of Exeter, UK,
by Roman Borisyuk Oct. 24, 2019

Oct. 24, 2019

The University of Exeter is looking for a postdoctoral Research Fellow in computational modelling of central pattern generators. This 3-year project in collaboration with neurobiologists from the University of St Andrews is funded by BBSRC. Vertebrate neural circuits are not fixed into producing a single behaviour. They can dynamically change their activity to respond appropriately to changing situations. This project asks how networks can switch between different behaviours. Specifically, you will investigate the dynamic transition between rhythmic activity patterns in the spinal cord circuits of the tadpole. To do so you will develop reduced and detailed computational models of the tadpole neural circuits that produce swimming and struggling behaviours. You will use reduced models to analyse the dynamic transition between swimming and struggling and determine how coordination among oscillatory circuits changes at the transition. You will also build detailed models (both anatomical and functional) to determine how the intrinsic characteristics of the neurons and the network properties together produce each behaviour. You will be supported by our experimental collaborators who have determined neuronal properties and network connectivity with an exquisite level of detail. Predictions from your model simulations will be tested experimentally using an array of electrophysiology and imaging tools. The tadpole central pattern generators offer a unique system to ask how vertebrate networks can produce and switch between different behaviours: they are complex enough to generate different behaviours, but simple enough that we have detailed information to ground our models. For more information about this job and to apply, please follow the link https://jobs.exeter.ac.uk and enter keyword 70011 Enquiries: Dr Joel Tabak - j.tabak(a)exeter.ac.uk Prof Roman Borisyuk - r.m.borisyuk(a)exeter.ac.uk, r.borisyuk(a)plymouth.ac.uk ________________________________ [http://www.plymouth.ac.uk/images/email_footer.gif]<http://www.plymouth.ac.uk/worldclass> This email and any files with it are confidential and intended solely for the use of the recipient to whom it is addressed. If you are not the intended recipient then copying, distribution or other use of the information contained is strictly prohibited and you should not rely on it. If you have received this email in error please let the sender know immediately and delete it from your system(s). Internet emails are not necessarily secure. While we take every care, University of Plymouth accepts no responsibility for viruses and it is your responsibility to scan emails and their attachments. University of Plymouth does not accept responsibility for any changes made after it was sent. Nothing in this email or its attachments constitutes an order for goods or services unless accompanied by an official order form.

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Job Opening: Research Assistant Professor at Hong Kong Baptist University
by COMP HKBU Oct. 24, 2019

Oct. 24, 2019

The Department of Computer Science at Hong Kong Baptist University is presently offering BSc, MSc, MPhil, and PhD programmes, and invites outstanding applicants for the following position. *Research Assistant Professor (PR0166/19-20) * The position is created and funded as part of the strategic research development initiatives in the Department. The appointee will be provided with a conducive research environment, and will work within an established group of faculty members in the Department. They are expected to perform group-based high-impact research and to undertake some teaching duties. Applicants should possess a PhD degree in Computer Science, Computer Engineering, Information Systems, or a related field, and have abilities to conduct high-quality research in one of the Department's key research areas: (i) computational intelligence, (ii) databases and information management, (iii) networking and systems, and (iv) pattern recognition and machine learning. These key research areas have a special thematic focus on (a) health informatics, and (b) secure and privacy-awareness computing related applications. Initial appointment will be made on a fixed-term contract up to three years. Re-appointment thereafter will be subject to mutual agreement. For enquiry, please contact Dr William Cheung, Head of Department (email: william(a)comp.hkbu.edu.hk More information about the Department can be found on its website at http://www.comp.hkbu.edu.hk. *Salary will be commensurate with qualifications and experience.* *Application Procedure:* Applicants are invited to submit their applications at the HKBU e-Recruitment System (jobs.hkbu.edu.hk) with samples of publications, preferably three best ones out of their most recent publications/works. Those should also request two referees to send in confidential letters of reference, with PR number (stated above) quoted on the letters, to the Personnel Office (Email: recruit(a)hkbu.edu.hk) direct. Those who are not invited for interview 4 months after the closing date may consider their applications unsuccessful. All application materials including publication samples, scholarly/creative works will be disposed of after completion of the recruitment exercise. Details of the University’s Personal Information Collection Statement can be found at http://pers.hkbu.edu.hk/pics. The University reserves the right not to make an appointment for the post advertised, and appointment will be made according to the terms and conditions then applicable at the time of offer. *Closing date: 25 November 2019 (or until the position is filled)* URL: http://www.comp.hkbu.edu.hk/v1/?page=job_vacancies&id=540

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Workshop announcement: HBP CodeJam #10
by Luca Leonardo Bologna Oct. 23, 2019

Oct. 23, 2019

Dear colleagues, You are invited to participate in: ---------------------------- The HBP CodeJam #10 Workshop Nov. 26, 2019 at 09:00 - Nov. 28, 2019 at 18:00 - Heidelberg | Germany https://www.humanbrainproject.eu/en/education/participatecollaborate/infras… Early-bird registration ends *31st October!* ---------------------------- The goal of the CodeJam workshops is to catalyze open-source, collaborative software development in computational and systems neuroscience and neuroinformatics by bringing together researchers, students and engineers to share ideas, present their work, and write code together. While the mornings are dedicated to invited and contributed talks, the afternoons are free for discussions, tutorials and code sprints. This year's theme is "Integration". It is aimed to gather scientists, students and engineers from different disciplines collaborating to build a highly integrated research infrastructure for computation-based neuroscience, and to show how this infrastructure can be used to model brain circuits, behaviour and learning, develop novel bio-inspired computing systems, and help discover new drugs for neurological disorders. Confirmed speakers: Mihai Andrei, CODEMART, Cluj-Napoca, Romania Axel von Arnim, fortiss GmbH, Munich, Germany Luca L. Bologna, Italian National Research Council, Italy Claudia Casellato, University of Pavia, Italy Andrew Davison, French National Centre for Scientific Research, France Alexander Dietz, Swiss Federal Institute of Technology Lausanne, Switzerland Allan Francani, EPFL, Switzerland Alberto Antonietti, University of Pavia, Italy Thanasis Karabatsis, National and Kapodistrian University of Athens, Athens, Greece Kostis Karozos, Athens University of Economics and Business (AUEB). Athens, Greece Michael Hines, Yale University, USA Christian Mauch, Heidelberg University, Germany Johannes Schemmel, Heidelberg University, Germany Philipp Spilger, Heidelberg University, Germany Lorenzo Vannucci, Instituto di BioRobotica, SSSA, Pisa, Italy Jonathan Villemaire-Krajden, EPFL, Switzerland Programme Committee Andrew Davison, French National Centre for Scientific Research, France Luca L. Bologna, Italien National Research Council, Italy Alexander Dietz, Swiss Federal Institute of Technology Lausanne, Switzerland Bernd Schuller, Forschungszentrum Jülich, Germany Evita Mailli, National and Kapodistrian University of Athens, Greece Eric Müller, Heidelberg University, Germany Egidio Falotico, Sant'Anna School of Advanced Studies, Italy Martina Schmalholz, Heidelberg University, Germany Please visit the event website https://www.humanbrainproject.eu/en/education/participatecollaborate/infras… to learn more and register. Places are limited, so early registration is recommended. Best regards, Luca Leonardo Bologna

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Open position in Juelich: Scientific coordinator in Computational Neuroscience in Juelich, Germany
by Martina Reske Oct. 21, 2019

Oct. 21, 2019

Dear comp-neuro The Institute of Neuroscience and Medicine (INM) at Research Center Jülich, Germany, investigates the structure and function of the human brain on different spatial and temporal scales within the research program “Decoding the Human Brain”. The Supercomputing Centre is home of one of the most powerful machines and has a leading role in the European exascale strategy. Basic neuroscience connects the two research areas as it heavily relies on modeling and simulation, which are necessary to approach the brain’s immense complexity, manage the huge amount of resulting data, and develop reliable control techniques. The subinstitute INM-6, Computational and Systems Neuroscience ( https://www.fz-juelich.de/inm/inm-6/EN/Home/home_node_INM6.html ), develops mathematical models of neuronal dynamics and function. Model-driven analyses of brain activity and structure as well as simulation of biologically realistic models form the core of our work. Among others, the INM-6/IAS-6 is actively involved in the EU flagship project „Human Brain Project“ (HBP, https://www.humanbrainproject.eu ). Together with its partners, INM-6 develops analysis tools and the leading simulation code (NEST) for brain scale networks with cellular resolution in an open source approach ( http://www.nest-initiative.org ). NEST has been under continuous development for 20 years and is serving a worldwide community. We are looking to recruit a Scientific Coordinator Your Job: * Supervision and controlling of administrative aspects of third party funded projects, incl. monitoring of project milestones, collecting and providing material for scientific reports, among others in EU projects in close collaboration with scientists, for instance within the Human Brain Project * Supporting the heads of the subinstitute in all scientific and administrative matters, incl. the recruitment of staff members * Collection, processing and evaluation of information relevant for the research strategy * Support of drafting of research proposals and grants * Organisation as well as professional and content-related preparation and monitoring of project-relevant events/meetings (e.g. meetings with internal and external cooperation partners, guest visits, conferences, workshops, reviews and committee meetings) * Communication with international research partners * PR work and social media: Support in the production of PR material and the presentation of scientific content in social media channels Your Profile: * Completed study in natural sciences, ideally with PhD * Experience in neuroscience, physics or computer science * Experience in administration of third-party funded projects * Strong organizational skills and multitasking capability * Ability to approach tasks with an eye toward efficiency and reproducibility * High communication skills and ability to work in a team * Excellent verbal and written forms of expression in both, German and English, especially with regard to drafting scientific and administrative texts * Ability to work under pressure, assertiveness and empathy * Skilled in software on project planning, text processing (Latex, Word), presentations (Powerpoint), scheduling of dates and websites * Willingness to travel * High ability to work in interdisciplinary, international team Beneficial: * Work experience abroad * Expertise in Computational Neuroscience * Professional experience in above-mentioned areas of responsibility Our Offer: * Exciting working environment on an attractive research campus with excellent infrastructure, located between the cities of Cologne, Düsseldorf and Aachen * International and interdisciplinary working atmosphere * Responsibility in world-class science environment at the interface between neuroscience and technology on the most complex known systems * High visibility through participation in an Open Source community project and work on key technologies of the European Human Brain Project * Integration into a interdisciplinary and international institute * A comprehensive further training programme * Flexible working hours and various opportunities to reconcile work and private life * Possibility, to apply for the desired level of working hours from 50% to a full position * Limited for 2 years with possible longer-term prospects * Salary and social benefits in conformity with the provisions of the Collective Agreement for the Civil Service (TVöD) Forschungszentrum Jülich aims to employ more women in this area and therefore particularly welcomes applications from women. We also welcome applications from disabled persons. We look forward to receiving your application until 12.11.2019 via our online recruiting system, https://www.hrecruiting.de/obf2/bewerbermanagement.php?kunden_nr=t5ChjatkIf… quoting the reference number 2019-374. Martina Reske -- Dr. Martina Reske Scientific Coordinator Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Institute for Advanced Simulation (IAS-6) Theoretical Neuroscience Jülich Research Centre and JARA Jülich, Germany Work +49.2461.611916 Work Cell +49.151.26156918 Fax +49.2461.619460 www.csn.fz-juelich.de<http://www.csn.fz-juelich.de> Office hours: TU & FR 9.00-17, WE & TH 9.00-13 ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

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SCiNDU 2020 Conference Announcement
by Geoffrey Goodhill Oct. 19, 2019

Oct. 19, 2019

3rd SYSTEMS AND COMPUTATIONAL NEUROSCIENCE DOWNUNDER (SCiNDU) CONFERENCE January 29-31, 2020 Queensland Brain Institute, University of Queensland, Brisbane, Australia http://www.qbi.uq.edu.au/scindu Abstract submission deadline Nov 15th 2019 Invited speakers: Matilde Balbi (University of British Columbia / University of Queensland) Tony Burkitt (Melbourne University) Gwyneth Card (Janelia) Kai-Hsiang Chuang (University of Queensland) Barry Dickson (Janelia / University of Queensland) Alex Fornito (Monash University) Takao Hensch (Harvard University, TBC) Vinod Menon (Stanford University) Lucy Palmer (Florey Institute) Nicholas Price (Monash University) Linda Richards (University of Queensland) Tatyana Sharpee (Salk Institute) Bruno van Swinderen (University of Queensland) Stephen Williams (University of Queensland) For registration, accommodation and abstract submission information please see http://www.qbi.uq.edu.au/scindu Professor Geoffrey J Goodhill Queensland Brain Institute and School of Mathematics & Physics University of Queensland St Lucia, QLD 4072, Australia Email: g.goodhill(a)uq.edu.au<mailto:g.goodhill@uq.edu.au> http://www.qbi.uq.edu.au/professor-geoffrey-goodhill

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Postdoc openings in the Lefebvre lab at uOttawa
by J?r?mie Lefebvre Oct. 18, 2019

Oct. 18, 2019

The Lefebvre lab at uOttawa is recruiting two postdoctoral fellows for the Winter 2020. Candidates interested in computational neuroscience, brain imaging and applied mathematics are encouraged to apply. Selected candidates will be involved in the following projects: 1. In collaboration with the Griffiths Lab at the CAMH Krembil Center for Neuroinformatics (KCNI) and University of Toronto, the goal of the project is to develop, analyse and explore computational models of non-invasive brain stimulation (e.g. TMS, TES) and their impact on multi-scale neural activity. Specifically, we seek to better understand network-based mechanisms of neural control, oscillatory entrainment and/or stimulation-induced brain plasticity. This project involves a combination of computational and mathematical modelling, has strong potential for knowledge translation, and aims to help inspire new non-invasive treatments for Major Depressive Disorder (MDD). 1. In collaboration with the Hospital for Sick Children (SickKids) in Toronto, the goal of this project is to better understand mechanisms of white matter plasticity, neuron-glia interactions, myelination and its impact on brain function. Using a combination of modelling and simulations, interfacing rodent and human data, the role of the fellow will be to examine the influence of white matter plasticity on neural synchrony and memory. This project involves a combination of computational and mathematical modelling, and strong interactions with experimentalists. The research will take place in the Department of Biology, the Brain and Mind Institute and the Center for Neural Dynamics of the University of Ottawa, a vivid interdisciplinary research cluster set in the bilingual capital of Canada. Both projects are deployed in the Ottawa-Toronto axis, through close collaborations between uOttawa, uToronto, CAMH KCNI, The University Health Network and The Krembil Research Institute. Based on the research needs and resources, candidates will be required to travel between both cities often. Throughout, candidates will interact closely with clinicians, experimentalists and scholars in neuroimaging. Requisites: Candidates should have completed their PhD in physics, mathematics, neuroscience or related disciplines, and have an excellent publication track record. Expertise in programming is a necessity, as well as independence in research. Experience in brain imaging, signal processing and dynamical systems are considered strong assets. Contracts are for one year, with possibility of extension subject to sufficient progress. of one additional year. While the positions are fully funded, candidates are nonetheless expected to apply for external/competitive funding throughout their training. To apply, please send 1) a letter of interest, 2) a full CV and 3) two(2) letters of reference to jeremie.lefebvre(a)hotmail.com<mailto:jeremie.lefebvre@hotmail.com> before Dec 1st , 2019. Selected candidates will be contacted for an interview in December. Jeremie Lefebvre PhD Scientist | Krembil Research Institute, University Health Network Assistant Professor | Department of Mathematics, University of Toronto Assistant Professor (cross appointed)| Institute for Biomaterial and Biomedical Engineering, University of Toronto Krembil Discovery Tower, 60 Leonard Ave, Room 4KD509, Toronto, M5T2S8, Canada Phone: +1 (416) 507-6935 Fax: +1 (416) 603-6274

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Head of the "Machine Learning Transfer Center"
by Philipp Berens Oct. 17, 2019

Oct. 17, 2019

The Cluster of Excellence "Machine Learning: New Perspectives for Science" at the University of Tübingen offers a position as Scientific Head of the central Cluster Facility "Scientific Transfer Center" (100%) to be filled as soon as possible. The position is initially limited until December 31, 2025, with the option of a tenured position. The Transfer Center will be a new facility of the Cluster of Excellence, intended to act as an interface between the Cluster and the various Departments of the University. The Scientific Head is going to promote the transfer of knowledge from the field of machine learning within the Cluster of Excellence to other Departments of the University and to help establishing links between scientific application domains and the research in the area of machine learning. YOUR TASKS - To counsel scientific projects from a variety of disciplines on questions in the field of machine learning - To develop prototypes for standard use cases of machine learning - To initiate networking events between researchers in the field of machine learning and scientific application domains - To develop a (small number of) special courses that introduce machine learning to doctoral students and scientists from other disciplines - To supervise the other scientists employed at the Transfer Center If you enjoy supporting scientific projects at the interface between machine learning and other fields of science, then this is the place for you. The position offers quite a lot of creative freedom. The opportunity to participate in publications is given, but is not the primary goal of the position. The Transfer Center will concentrate on the transfer of machine learning methods to other fields of science. Target persons are doctoral students and scientists from other disciplines. Teaching in Bachelor's or Master's degree programs and transfer to industry will explicitly not be the scope of the Transfer Center. YOUR PROFILE - A doctorate in machine learning or data science and a background in computer science, physics, mathematics or a similar field - Good communication skills with different people - You enjoy working on machine learning problems in different contexts. You are curious about research in various scientific disciplines - Programming experience in the common languages (Python, R, C++) - Experience in project management Further information on the Cluster of Excellence can be found at www.ml-in-science.uni-tuebingen.de. Applications with the usual documents (cover letter, curriculum vitae, copies of certificates, list of publications) are requested by November 08, 2019 in electronic form (as a single PDF, not exceeding 5 MB) to the Central Office of the Cluster of Excellence (ml-in-science(a)uni-tuebingen.de) Please also direct any questions regarding this advertisement to the Central Office. ml-in-science(a)uni-tuebingen.de - www.ml-in-science.uni-tuebingen.de https://www.academics.de/jobs/preview/1015018?preview_id=_GfViDrGixL5dwP6Y5… -- Prof. Dr. Philipp Berens Institute for Ophthalmic Research, University of Tübingen Excellence Cluster "Machine Learning - New Perspectives for Science" http://www.berenslab.org phone: +49-7071-2988833

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PhD posittion in machine learning for closed-loop deep brain stimulation
by Sebastián Castaño C. Oct. 17, 2019

Oct. 17, 2019

Dear mailing-list members, We are looking for a motivated student to work with us at the Brain State Decoding lab, University of Freiburg, Germany! Specifically, we have an open PhD position for investigating machine learning methods for closed-loop deep brain stimulation systems in Parkinson's disease patients. Find the full proposal under https://www.bsdlab.uni-freiburg.de/jobs/phd-position-closed-loop-control-fo… and apply to work with us! Best on behalf of the lab, Sebastian Castaño-Candamil Doctorate student Brain state decoding lab University of Freiburg E // sebastian.castano(a)blbt.uni-freiburg.de (mailto:sebastian.castano@blbt.uni-freiburg.de)

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CFP: FOSDEM 2020 Open Research Tools & Technologies track
by Achilleas Koutsou Oct. 16, 2019

Oct. 16, 2019

This is a *Call for Proposals* for the *Open Research Tools & Technologies* devroom/track at FOSDEM 2020. Web version: https://research-fosdem.github.io/ For the first time at FOSDEM, we are organising a track for the tools and technologies being used in and developed for researchers and scientists and the unique challenges surrounding these topics. FOSDEM (Free and Open source Software Developers' European Meeting) is a non-commercial, volunteer-organised European event centred on free and open-source software development. It is aimed at developers and anyone interested in the free and open-source software movement. It aims to enable developers to meet and to promote the awareness and use of free and open-source software. More info: https://fosdem.org/2020/about/ https://en.wikipedia.org/wiki/FOSDEM The *Open Research Tools & Technologies* devroom is a track dedicated to bringing together developers of research tools with users, potential future contributors, and developers of the wider FLOSS community to discuss the unique challenges for these particular areas of software development. We aim to: - Allow knowledge-based tool developers to publicise their efforts and become aware of other FLOSS projects. - Facilitate the pooling of coding efforts on (often poorly funded) tools. - Create a network where otherwise isolated developers and research engineers can share common concerns. - Provide social recognition for people who work in fields where designing and developing tools does not produce the traditionally recognisable outcomes, e.g., research papers. We seek talks about: - New software releases of research tools or technologies. - Feedback on open technology stacks used in research contexts (e.g., scientific research, journalistic inquiry, archive creation or publication, etc.) which collect, analyse, document, visualise, and/or share data. - Tool design and implementation for specific research contexts, e.g., how to hold an algorithm accountable to social scientists, how to foster better replicability and interoperability thanks to FLOSS, how to cope with biases of a chart for a data journalist, etc. - Issues and opportunities about bridging tech culture with research environments (research labs, libraries, newsrooms, museums, etc.). Talks will be around 20-40 minutes long + 5-10 minutes Q&A, must be in English, will be video recorded by the amazing FOSDEM staff and will be available on the FOSDEM video recordings archive. *Time and place:* Saturday 1st February 2020 from 10:30 to 19:00 ULB, Brussels, Belgium *How to submit proposals* *By submitting a proposal you agree to being recorded and to have your talk made available.* *Deadline:* Sunday 1st December 2019 23:59 CET Submissions must include: - Abstract - Session type (Lecture or Lightning talk) - Session length (20-40 min, 10 min for a lightning talk) - Expected prior knowledge / intended audience - Speaker bio The following information may also be provided but is optional: - Links to code / slides / material for the talk - Links to previous talks by the speaker Submission process is managed in the Pentabarf system used by the FOSDEM conference. Apply for a talk: https://penta.fosdem.org/submission/FOSDEM20 When submitting your talk in Pentabarf, make sure to select the *Open Research Tools and Technologies Devroom* as the Track. If you already have a Pentabarf account from a previous FOSDEM event, please reuse it. Feel free to contact me directly for any questions or concerns: koutsou(a)biologie.uni-muenchen.de <koutsou(a)bio.lmu.de> *Other devrooms that might be of interest* Even if FOSDEM is not science-specific, you might be interested by many other talks. Some developer rooms (tracks) that may be relevant to the interests of this mailing list: - HPC, Big Data, and Data Science - Graph systems and algorithms - Open source design - Community *Developer room organisers* Achilleas Koutsou, G-Node, http://g-node.org https://github.com/achilleas-k Michael Sonntag, G-Node, http://g-node.org https://github.com/mpsonntag Paul Girard, Sciences Po médialab, https://medialab.sciencespo.fr/equipe/paul-girard https://github.com/paulgirard Mathieu Jacomy, Aalborg University TANT Lab, https://www.tantlab.aau.dk/ https://github.com/jacomyma

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Postdoctoral position on computational modelling: interfacing models with nanoarrays to drive cultured neurons
by Yiota Poirazi Oct. 16, 2019

Oct. 16, 2019

1-2 Postdoctoral positions are available in the lab of Panayiota Poirazi ( www.dendrites.gr) in Crete, starting on January 1st, 2020. The positions are for 2 years, with a possibility of renewal for another 2 years. Salary is commensurate with experience. The successful applicant will work on a multi-disciplinary project funded by the FET (Future and Emerging Technologies) Open Instrument of the European Innovation Council. The NEUREKA project aims to develop a new prototype technology that can be used for drug discovery for neurological diseases. In this new hybrid technology, computational neuronal networks that simulate dysfunction will drive cultured neurons to replicate neuropathologies. A proof-of-concept will be provided for Alzheimer’s disease, using human (iPSC)-derived neurons while testing the effects of novel drug candidates. The NEUREKA partners include the University of Padua (Prof. Vassanelli), CNRS (Prof. Larrieu), the University of Milano Bicocca (Prof. Fanciulli) and Maxwell Biosystems. Pharma advisors include Roche and Cognition Therapeutics Inc. For more information please visit: http://www.dendrites.gr/en/openings-11 Applications (full CV, statement of research interest and name and contact of 2-3 referees) should be sent by e-mail to poirazi(a)imbb.forth.gr, quoting “NEUREKA: Postdoctoral position” in the subject line. The deadline for applications is *November 30th, 2019*. Applications will be examined until the position is filled. Informal enquiries are welcome. -- Panayiota Poirazi, Ph.D. Research Director Institute of Molecular Biology and Biotechnology (IMBB) Foundation of Research and Technology-Hellas (FORTH) Vassilika Vouton, P.O.Box 1385, GR 70013, Heraklion, Crete GREECE Tel: +30 2810 391139 Fax: +30 2810 391101 Εmail: poirazi(a)imbb.forth.gr Lab site: www.dendrites.gr

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Post-doctoral Researcher in Computational modelling of hippocampal circuits (Blue Brain Porject, Switzerland)
by Armando Romani Oct. 16, 2019

Oct. 16, 2019

Blue Brain Porject (Campus Biotech, Geneva, Switzerland) is looking for a *Post-doctoral Researcher in Computational modelling of hippocampal circuits*. Improve the existing large-scale models of rodent hippocampus. The current network models are already the product of several iterations and their emergent behavior can reproduce many features of the hippocampus. The work on the models continues by expanding the region of interest from CA1 (the first region we considered) to the full hippocampus, and eventually by connecting the hippocampus to the rest of the brain. In parallel, the models will include more or more details. For example, we are working on including gap junctions, long-term plasticity, structural plasticity, neuromodulation, glia, vasculature, and so on. Exploit the models to answer outstanding questions in the field, such as information processing in the hippocampus, spatial navigation, memory processes, development of pathological conditions (Alzheimer’s disease, epilepsy). The models are designed not to answer one specific question, but for a general purpose. This ensures a larger validity of the models and allows us to potentially test many different hypotheses and make likewise predictions. Follow the link below to learn more about the position and how to apply. https://recruiting.epfl.ch/Vacancies/1005/Description/2 — Armando Romani, PhD Junior Group Leader - Simulation Neuroscience Division EPFL - Blue Brain Project Campus Biotech Chemin des Mines 9 CH-1202 Geneva, Switzerland Phone +41 (0)21 693 7190

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Post-doctoral Researcher in Computational modelling of thalamo-cortical circuits (Blue Brain Porject, Switzerland)
by Armando Romani Oct. 16, 2019

Oct. 16, 2019

Blue Brain Porject (Campus Biotech, Geneva, Switzerland) is looking for a* Post-doctoral Researcher in Computational modelling of thalamo-cortical circuits*. The goal of this project is to leverage the Blue Brain software and existing thalamic models to build and validate biologically-accurate models of thalamo-cortical circuitry. Modelling these circuits is a crucial step to investigate brain functions, such us sensory transmission, sleep rhythms, wakefulness, alertness. The successful candidate would be responsible for gathering data about thalamo-cortical circuits from the literature, open-access datasets and in vitro studies in collaboration with the experimental lab. Interactions with biology and experimental experts would be fundamental to validate and confirm model predictions. In addition, the candidate would provide guidance and scientific expertise to the technical teams and contribute to the on-going refinement of workflows and tools to build data-driven unifying brain tissue models. Furthermore, the candidate will work in collaboration with engineering teams on visualization, high performance computing, data integration and with project managers to define objectives and timelines to achieve overarching objectives and meet aggressive deadlines. Follow the link below to learn more about the position and how to apply. https://recruiting.epfl.ch/Vacancies/827/Description/2 — Armando Romani, PhD Junior Group Leader - Simulation Neuroscience Division EPFL - Blue Brain Project Campus Biotech Chemin des Mines 9 CH-1202 Geneva, Switzerland Phone +41 (0)21 693 7190

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Human Neocortical Neurosolver New Features & SFN 2019 Demos
by Stephanie Jones Oct. 16, 2019

Oct. 16, 2019

We are happy to announce several exciting developments with the new Human Neocortical Neurosolver (HNN) software designed for cell and circuit interpretation of human EEG/MEG. 1. An updated version of HNN with a new, frequently requested feature of parameter optimization (with a tutorial) is now available. Check it out at hnn.brown.edu. 2. HNN will be presented with live demonstrations at SFN 2019 in Chicago, IL. Sunday October 20th 11-11:30am Carney Booth 2129 Sunday October 20th 6:30-8:30pm BRAIN Initiative Alliance Tools & Technology Social Hyatt Regency McCormick Place, Ballroom CD Monday October 21th 11-11:30am Carney Booth 2129 Monday October 21st 6:45pm Open-Source Technology Social Hyatt Regency McCormick Place, Room N135 Wednesday October 23rd 1-5pm McCormick Place: Hall A. Poster 729.06 3. A HNN methods paper is now available on bioRxiv (Neymotin et al, BioRxiv 2019:740597. https://doi.org/10.1101/740597 <https://doi.org/10.1101/740597>) ******************************************* Stephanie R. Jones, PhD Associate Professor Brown University Department of Neuroscience Stephanie_Jones(a)Brown.edu https://blogs.brown.edu/joneslab/ <https://blogs.brown.edu/joneslab/> Human Neocortical Neurosolver https://hnn.brown.edu <https://hnn.brown.edu/>

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AREADNE 2020 Conference Announcement
by John Pezaris Oct. 15, 2019

Oct. 15, 2019

AREADNE 2020 Research in Encoding and Decoding of Neural Ensembles Nomikos Conference Centre, Santorini, Greece 16-20 June 2020 http://areadne.org info(a)areadne.org The AREADNE conferences bring scientific leaders from around the world to present their recent findings on the functioning of neuronal ensembles in an informal yet spectacular setting on Santorini. The conference series emphasizes interaction with a size and pace that encourages in-depth discussion. Interested researchers are strongly encouraged to submit an abstract for poster presentation as attendance is strictly limited, and the conference typically sells out. Abstract submission deadline is 24 Jan 2020. Send us your best work!

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Reminder: 1st Elephant User Workshop for Reproducible Data Analysis in Electrophysiology, Paris, Nov 4-6, 2019
by Michael Denker Oct. 15, 2019

Oct. 15, 2019

Reminder for the ***1st Elephant User Workshop*** --Accelerate Structured and Reproducible Data Analysis in Electrophysiology-- Paris, France Nov 4-6, 2019 Summary: In this workshop, users will be trained in the use of community-driven tools developed in the context of the Human Brain Project to analyze electrophysiological data, such as spike train data or LFP time series. In addition, participants receive help in integrating their own data into such analysis workflows. The topics covered will be: * reading and manipulating electrophysiology data in Python using Neo [1] * analysis of such data using Elephant [2] * best practices for integrating metadata into your workflow to aid the analysis process * best practices for structuring of analysis results * tracking data analysis pipelines using the HBP Knowledge Graph [3] * collaboration and sharing using the HBP Collaboratory [4] For more information and registration, check out: https://www.humanbrainproject.eu/en/education/participatecollaborate/infras… Organizers: Andrew Davison | French National Centre for Scientific Research, France Michael Denker | Forschungszentrum Jülich, Germany Martina Schmalholz | Heidelberg University, Germany References: [1] Neo, https://neo.readthedocs.io [2] Elephant, https://elephant.readthedocs.io [3] HBP Knowledge Graph, https://www.humanbrainproject.eu/en/explore-the-brain/ [4] HBP Collaboratory, https://collab.humanbrainproject.eu ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

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Neuroimaging data scientist position in Marseille, France
by Sylvain Takerkart Oct. 15, 2019

Oct. 15, 2019

Neuroimaging Data Scientist Multimodal neuroimaging study of cerebellar anomalies in Parkinson’s disease The project SENCE (Movement disorders in Parkinson’s disease: The role of somatosensory deficits and cerebellar anomalies) is funded by the French National Research Agency (ANR) and conducted in collaboration with the University of Oxford (Medical Research Council - MRC). It investigates the anatomical anomalies and abnormal metabolism of the cerebellum resulting from basal ganglia deregulation in Parkinson’s Disease (PD), which may contribute substantially to motor deficits. To this aim, we collect in PD patients (and healthy controls) an original multimodal neuroimaging dataset, comprising anatomical, diffusion-weighted (DWI), and resting state fMRI (rs-fMRI), as well as FDG-PET images, complemented by behavioural and electrophysiological recordings (EEG/intracranial LFP) collected in the same participants during motor tasks performed ON/OFF dopaminergic medication and/or ON/OFF deep brain stimulation (using open- or closed-loop adaptive stimulation protocols). -- Missions -- The data scientist will be responsible to set-up processing pipelines dedicated to analyzing the different neuroimaging scan types (MRI and PET), both at the full-brain level and with a particular focus on the characterization of the anatomy, connectivity and metabolism of the cerebellum. These neuroimaging results will also be combined with behavioural and electrophysiological data which will be analysed by other members of the project team. Furthermore, the data scientist will organize the raw and processed data in a standardized fashion to make it accessible to all the consortium and to the scientific community at large. These missions fall into our commitment to reproducible science through open code and data. -- Profile -- This position is for a candidate who is comfortable (or proficient) with computer programming (python will be our language of choice; matlab will also be used) and has good knowledge and/or experience in signal and image processing. It can be of interest to different types of profiles. You are a young graduate (BSc or MSc) either in data science, in electrical engineering or in neuroscience and you want to be at the heart of an innovative medical imaging project, with the possibility to continue as a PhD student. Or you already have a PhD in a relevant field and you want to take this opportunity to fulfill the aforementioned missions while getting further involved in the research aspects of the project, which should offer excellent opportunities for publications in neuroscience or methodological journals. -- Working environment -- The Institut de Neurosciences de la Timone (INT) is one of the top French neuroscience research institutes with 150 staff members gathered in 10 inter-disciplinary teams examining different aspects of the cerebral organization. It is located on the medical campus of Aix-Marseille University. The successful candidate will join the SENCE project’s team within INT and will interact with cognitive neuroscientists, theoretical neuroscientists as well as specialists in neuroimaging data acquisition and processing. Marseille, the second largest city in France, is a vibrant inter-cultural hub located on the Mediterranean shore, and only 2h away from the Alps mountains. The position is initially open for one year, with a possible renewal for two more years. Starting date can be as early as December 2019 and can be postponed until the position is fulfilled. If you are interested, please send your resume and cover letter to: Sylvain_DOT_Takerkart_AT_univ-amu_DOT_fr and Nicole_DOT_Malfait_AT_univ-amu_DOT_fr -- Sylvain Takerkart Institut des Neurosciences de la Timone (INT) UMR 7289 CNRS-AMU Marseille, France tél: +33 (0)4 91 324 007 http://www.int.univ-amu.fr/_TAKERKART-Sylvain_?lang=en

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Open-Rank Position: Bilkent University
by Hulusi Kafaligonul Oct. 14, 2019

Oct. 14, 2019

*Open-Rank Position, Aysel Sabuncu Brain Research Center and National Magnetic Resonance Research Center (UMRAM) at Bilkent University* Bilkent University invites faculty applications (rank open) for a position in the Aysel Sabuncu Brain Research Center and National Magnetic Resonance Research Center (UMRAM). The strategic plan includes an expansion of research related to molecular and cellular neuroscience. Accordingly, we seek applications from promising or established scholars who have worked in this or a related field, and who integrates or plans to integrate neuroimaging in their studies. The newly built research center has spacious state-of-the-art molecular and cellular laboratories, in addition to animal research facilities. An Interdisciplinary Graduate Program in Neuroscience offers Master's and PhD programs that was opened five years ago. Finally, there are also human psychophysics, EEG laboratories and two MRI scanners (3T and 1.5T) with plans to purchase a high field scanner (7T) for animal studies. Bilkent is located in Ankara, Turkey's metropolitan capital with daily direct flights to Istanbul and other major European cities. Bilkent University also provides faculty members and their families with free housing and access to private health insurance. Qualifications and Responsibilities: Applicants should have a PhD in neuroscience or related discipline, and should have an excellent publication record (requirements vary with rank). A demonstrated ability or the potential to secure external research funding will be a strong advantage. Faculty members are expected to maintain productive research programs. Successful applicants will teach during the Fall and Spring semesters with no teaching requirement during summer, and supervise PhD and Master's students. Appointment: This full-time appointment will begin in September 2020 (negotiable). Salary will be internationally competitive and commensurate with qualifications and experience. *Application Procedure* Applicants should submit 1. a cover letter; 2. CV; 3. research statement; 4. teaching statement; 5. pdf copies of 3 representative publications; and 6. contact information for 3-5 professional references. Review of applications will commence on November 30, 2019 and continue until the position is filled. Inquiries about the university should be directed to Hulusi Kafaligonul athulusi(a)bilkent.edu.tr <mailto:hulusi@bilkent.edu.tr>or +90 312 290 3016.To apply please go to the following link: https://stars.bilkent.edu.tr/staffapp/UMRAM2019For more information, please visit the following websites: beyin.bilkent.edu.tr <http://beyin.bilkent.edu.tr/> umram.bilkent.edu.tr <http://umram.bilkent.edu.tr/> neuro.bilkent.edu.tr <http://neuro.bilkent.edu.tr/> bilkent.edu.tr <http://bilkent.edu.tr/> -- Hulusi Kafaligonul Assistant Professor National Magnetic Resonance Research Center Interdisciplinary Neuroscience Program Bilkent University, Ankara, Turkey http://hulusi.bilkent.edu.tr/ -- Bu e-posta virüslere karşı Avast antivirüs yazılımı tarafından kontrol edilmiştir. https://www.avast.com/antivirus

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PhD and Postdoc positions in Frankfurt, Germany
by Martin Vinck Oct. 12, 2019

Oct. 12, 2019

Apologies for cross-posting: The laboratory of Dr. Martin Vinck at the Ernst Struengmann Institute for Neuroscience in Cooperation with Max Planck Society <http://www.esi-frankfurt.de/esi-frankfurt/>is seeking multiple Postdocs and PhDs for experimental projects in marmoset (ideally starting early spring of 2019). We will study predictive processing in the visual system, test new models of object recognition, and the contribution of different cell types to neural coding. Data will be collected with chronic, high-density silicon probes including wireless recordings during (freely moving) natural behavior (using the eCube white matter system). A part of the project involves optogenetics. Additional training in high-density electrophysiology can be acquired by participation in projects in mice. You will work closely together with computational scientists in our laboratory working on deep learning and state space analyses. The main focus of the project is the interpretation of neural activity from artificial neural networks (in particular recurrent and predictive neural networks) and the study of population coding. We are looking for candidates with a biology or medicine background and experience in behavioral training and electrophysiology. Frankfurt is an internationally oriented city with many neuroscience institutes in the neighbourhood, e.g. the Max Planck Institute for Brain Research <http://brain.mpg.de/home.html>, the FIAS <https://fias.institute/>, the Interdisciplinary Center for Neuroscience <https://www.izn-frankfurt.de/en/>, and the institute for Empirical Aesthetics. Interested candidates are invited to send their application materials in electronic form (PDF format) to martin.vinck(a)esi-frankfurt.de. The first deadline for applications is 7 of November 2019. Applications should contain a letter of intent, a detailed curriculum vitae, lists of university courses completed with marks obtained, and the names of at least two scientists who can give references (or at least two reference letters). The advertisement will be valid until positions are filled. Positions are not yet filled.

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PhD studentship in Bristol
by Cian O'Donnell Oct. 12, 2019

Oct. 12, 2019

We are looking for a computational neuroscience PhD student to start September 2020 to do computational modelling of synaptic plasticity in neurodevelopmental brain disorders. You would mainly be based in the University of Bristol in the group of Cian O’Donnell, and co-supervised by Krasi Tsaneva-Atanasova (University of Exeter) and Jeremy Hall (Cardiff University). Your background can be flexible but training in neuroscience, mathematical modelling and/or scientific programming would be beneficial. Usually we use Julia, Python or Matlab programming languages. Project outline: Autism and Schizophrenia, two of the most common neurodevelopmental disorders, have been linked with ~100 different genetic mutations each. Many of the implicated genes code for proteins involved in synaptic plasticity. It may be that these distinct mutations converge to give similar alterations to the “rules of synaptic plasticity”, and therefore affect learning and development. L-type calcium channel are one notable example, frequently popping up in risk gene lists and known to play crucial roles in synaptic plasticity. In this PhD project you would extend our existing biophysical models of calcium signalling at rodent hippocampal synapses to try to figure out the role of dysfunctional L-type calcium ion channels in these brain disorders. A more detailed project description can be found here: https://www.gw4biomed.ac.uk/wp-content/uploads/sites/9/2019/09/Computationa… The project will involve numerical simulations with Cian O’Donnell (Bristol), mathematical analysis of reduced models with Krasi Tsaneva-Atanasova (Exeter), using electrophysiological and calcium imaging data from genetic animal models of neuropsychiatric disorders collected in the lab of Jeremy Hall (Cardiff). You would apply directly to the MRC GW4 BioMed PhD program (https://www.gw4biomed.ac.uk) which spans Bristol, Cardiff, Exeter and Bath Universities. Application deadline is 25th November and open only to UK or EU citizens or residents (see GW4Biomed site for eligibility details). Please contact Cian O’Donnell (cian.odonnell(a)bristol.ac.uk<mailto:cian.odonnell@bristol.ac.uk>) to discuss before applying. More info on Cian O’Donnell’s group: https://seis.bristol.ac.uk/~co15268 And the lively Bristol Computational Neuroscience Unit: https://bristolcnu.github.io Krasi Tsaneva-Atanasova: https://emps.exeter.ac.uk/mathematics/staff/kt298 Jeremy Hall: https://www.cardiff.ac.uk/people/view/57718-hall-jeremy

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