- Comp-neuro - lists.cnsorg.org

Positions at the University of Helsinki
by Rich, Scott May 10, 2024

May 10, 2024

Dear Comp-Neuro Listserv, I’m forwarding along this notice on behalf of a colleague. Apologies for any potential double postings! Happy to share that we are looking for two new systems neuroscientists and/or computational neuroscientists at the Neuroscience Center, University of Helsinki, Finland. The PI position is 5+4 years, salary is covered fully, and no teaching load. After the 9 years, it would be likely that a professor position would open up and the PI could apply for full profesor, but they could also obtain grants and stay as a PI in the Neuroscience Center without teaching. Finland is an awesome place to live and have a family. https://jobs.helsinki.fi/job/Helsinki-Two-group-leader-positions%2C-Neurosc… ___________ Sincerely, Scott Rich, Ph.D. Assistant Professor, University of Connecticut Department of Physiology and Neurobiology pnb.uconn.edu/person/scott-rich/ <http://pnb.uconn.edu/person/scott-rich/>richlab.pnb.uconn.edu<http://richlab.pnb.uconn.edu/>

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INCF/OCNS Software Working Group sessions: Pierre Yger: SpikeInterface: 14 May 1500 UTC
by Ankur Sinha May 9, 2024

May 9, 2024

Dear all, Apologies for the cross posts. Pierre Yger will present SpikeInterface at the next open INCF/OCNS Software Working Group (WG) session on May 14 at 1500 UTC. There will be a Q&A session after the presentation, followed by WG business. Please find the abstract and joining information below: - When: May 14, 1500 UTC - Where: Zoom (https://ucl.zoom.us/j/91017703246?pwd=RmdwMW9xL0FFaFVVL0Z6dUtnbkplZz09) - Web page: https://ocns.github.io/SoftwareWG/2024/05/07/wg-meeting-14-may-2024-spikein… Abstract: - https://elifesciences.org/articles/61834 - https://spikeinterface.readthedocs.io/en/latest/ Much development has been directed toward improving the performance and automation of spike sorting. This continuous development, while essential, has contributed to an over-saturation of new, incompatible tools that hinders rigorous benchmarking and complicates reproducible analysis. To address these limitations, we developed SpikeInterface, a Python framework designed to unify preexisting spike sorting technologies into a single codebase and to facilitate straightforward comparison and adoption of different approaches. With a few lines of code, researchers can reproducibly run, compare, and benchmark most modern spike sorting algorithms; pre-process, post-process, and visualize extracellular datasets; validate, curate, and export sorting outputs; and more. In this paper, we provide an overview of SpikeInterface and, with applications to real and simulated datasets, demonstrate how it can be utilized to reduce the burden of manual curation and to more comprehensively benchmark automated spike sorters. -- Thanks, Regards, Ankur Sinha (He / Him / His) | https://ankursinha.in Research Fellow at the Silver Lab, University College London | http://silverlab.org/ Free/Open source community volunteer at the NeuroFedora project | https://neuro.fedoraproject.org Time zone: Europe/London

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Summer School for Primate Cognitive Neuroscience 2024, Bad Bevensen, Germany
by Igor Kagan May 8, 2024

May 8, 2024

Dear colleagues, Applications are still being accepted for the third Summer School for Primate Cognitive Neuroscience <https://www.dpz.eu/index.php?id=4297>, taking place July 28 - August 09, 2024, in Bad Bevensen, Germany (see http://www.dpz.eu/pcn2024).The application deadline is May 17. This Summer School is intended for PhD students and early postdocs from the field of cognitive and systems neuroscience working with non-human primates and will provide an outstanding training and networking opportunity for young researchers. Teaching will focus on cognitive processes in primate sensory and motor systems as well as on social settings and decision making, and will include important and novel results and methodologies. Topics of animal welfare, ethics, and media outreach will also be covered. A poster presentation about current research of the participant is expected. Selection of applicants is competitive. Since funding of this School is mostly covered (including meals and accommodation for the two weeks), only a reduced participation fee is required (1000 EUR). A limited number of travel grants is also available for international participants. Organizers: Hans Scherberger Stefan Treue Alexander Gail Igor Kagan Raymundo Báez-Mendoza -- Dr. Igor Kagan Head of Decision and Awareness Group, German Primate Center (DPZ) Kellnerweg 4, Goettingen 37077, Germany

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Second Announcement: 9th Int. Summer School on Neuroengineering 'Massimo Grattarola’, June 10th – 14th, 2024 Genova ITALY
by Michela Chiappalone May 7, 2024

May 7, 2024

**DO NOT MISS THIS FANTASTIC OPPORTUNITY** Dear all, Join us in the beautiful city of Genova for the 9th International Summer School on Neuroengineering. The 2024 edition is dedicated to 'Neuroengineering for health and disease: a multi-scale approach'. Info, program, registration are available at: https://neuroengineering.eu/ The Best Poster Award for the three Best Posters (1st, 2nd, 3rd winners) will be awarded during the final ceremony on June 14th, 2024. **Early bird rates extended till May 15th Full List of Speakers: Luca Leonardo Bologna (CNR, Palermo, Italy) Matteo Cerri (University of Bologna, Bologna, Italy) Marco Chierici (Fondazione Bruno Kessler, Trento, Italy) Giuseppe Cosentino (Fondazione IRCCS Mondino, Pavia, Italy) Egidio D’Angelo (University of Pavia, Pavia, Italy) Elisa Donati (University of Zurich, Zurich, Switzerland) Tommaso Fellin (Istituto Italiano di Tecnologia, Genova, Italy) David J. Guggenmos (University of Kansas Medical Center, Kansas City, KS, USA) Andreas Hierlemann (ETH Zurich, Basel, Switzerland) Viktor Jirsa (Aix Marseille Université, Marseille, France) Jean-Charles Mariani (Istituto Italiano di Tecnologia, Rovereto, Italy) Maurizio Mattia (Istituto Superiore di Sanità, Roma, Italy) Alberto Mazzoni (Scuola Superiore Sant’Anna Pisa, Italy) Silvestro Micera (Scuola Superiore Sant’Anna Pisa, Italy & EPFL, Lausanne, Switzerland) Farshad Moradi (Aarhus University, Aarhus, Denmark) Yuval Nir (Tel Aviv University, Tel Aviv, Israel) Lino Nobili (IRCCS Ospedale Giannina Gaslini & University of Genova, Genova, Italy) Francesco Nori (Google Deepmind, London, UK) Domenico Pellegrini-Giampietro (University of Firenze, Firenze, Italy) Michele Piana (University of Genova, Genova, Italy) Petra Ritter (Charité Universitätsmedizin, Berlin, Berlin, Germany) Marianna Semprini (Istituto Italiano di Tecnologia, Genova, Italy) Cristina Tassorelli (University of Pavia, Pavia, Italy) Nicola Toschi (University of Roma Tor Vergata, Roma, Italy) Valter Tucci (Istituto Italiano di Tecnologia, Genova, Italy) Antonio Uccelli (IRCCS Ospedale Policlinico San Martino & University of Genova, Genova, Italy) Sheng Wang (NBE, Aalto University, Helsinki, Finland) Maike Zijlamns (UMC Brain Center and Stichting Epilepsie Instellingen Nederland, Utrecht, The Netherlands)) Organizers: * Gabriele Arnulfo, Michela Chiappalone, Marco Fato, Paolo Massobrio, Sergio Martinoia (University of Genova, Genova, Italy) * Lino Nobili (IRCCS Ospedale Giannina Gaslini & University of Genova, Genova, Italy) * Egidio D’Angelo (University of Pavia, Pavia, Italy) * Alberto Mazzoni (Scuola Superiore Sant’Anna, Pisa, Italy) Feel free to get in touch with us to get more information at this email address: info(a)neuroengineering.unige.net<mailto:info@neuroengineering.unige.net> Looking forward to hosting you in Genova, Best regards, Michela Chiappalone, on behalf of the organizing committee ------------------------------------------------------------------------- Prof. Michela Chiappalone, PhD Associate Professor of Bioengineering Department of Informatics, Bioengineering, Robotics, and Systems Engineering - DIBRIS UNIVERSITY OF GENOVA Via all’Opera Pia 13A, 16145 Genova E-mail: michela.chiappalone(a)unige.it<mailto:michela.chiappalone@unige.it> Researcher Rehab Technologies IIT-INAIL Lab ISTITUTO ITALIANO DI TECNOLOGIA Via Morego 30, 16163 Genova E-mail : michela.chiappalone(a)iit.it<mailto:michela.chiappalone@iit.it>

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INTERNATIONAL CONFERENCE ON ARTIFICIAL INTELLIGENCE IN HEALTHCARE (AIiH)
by Jiaxiang ZHANG May 7, 2024

May 7, 2024

INTERNATIONAL CONFERENCE ON ARTIFICIAL INTELLIGENCE IN HEALTHCARE (AIiH) 4 - 6 September 2024, Swansea, UK https://aiih.cc (1st CALL FOR ABSTRACT) [ apologies for cross-postings] Submission deadline: Monday 1 July (FIRM) *1. INTRODUCTION * https://aiih.cc/abstracts/ AIiH 2024 welcomes late-breaking short abstract submissions to be included as poster or short spot-light presentation at the conference. This is to both enable fast dissemination of promising preliminary findings and encourage attendance by a broader audience of early career researchers (including research students), healthcare professionals, and industrial practitioners. AIiH 2024 is a single track conference with oral and poster presentations and will include 5 keynote presentations. The conference will also feature a plenary session, which consists of 3 invited speakers who have extensive experiences in related areas. AIiH aims to provide a prominent platform for researchers and practitioners who are devoted to improving healthcare using modern artificial intelligence. We recognise that healthcare applications present complex and sometimes unique challenges across a wide spectrum, from ethics to technical developments, that generic AI methods are often inadequate. By creating this dedicated forum, we encourage discussions and disseminations of efficient and effective AI solutions and technologies for healthcare, and in turn we hope to influence the research, technology adoption, and decision making in healthcare. *2. KEYNOTE SPEAKERS* https://aiih.cc/keynote-speakers/ Prof. Hao Ni University College London Dr. Timothy Rittman Cambridge University Dr. Konstantinos Kamnitsas Oxford University Prof. Jacques Fleuriot Edinburgh University Prof. Eiichiro Tanaka Waseda University, Japan *3. PLENARY SESSION ON TRANSLATING AI RESEARCH INTO PRACTICE* https://aiih.cc/plenary-session/ Dr. Alba Di Pardo IRCCS Istituto Neurologico Mediterraneo Neuromed Dr. Noura Al Moubayed Durham University & Evergreen Life Dr. Haoda Fu Eli Lilly and Company *4. ABSTRACT SUBMISSION* Submission instructions are available at the conference website: https://aiih.cc/abstracts/ *5. IMPORTANT DATES* Abstract deadline: Monday 1 July (FIRM) Abstract notification: Monday 8 July (FIRM) Abstract registration: Monday 15 July Late registration: Monday 12 August Main conference: Wednesday 4 – Friday 6 September 2024 *5. ORGANISERS* CONFERENCE GENERAL CHAIRS Xianghua Xie, Swansea University, UK Iain Styles, Queen’s University Belfast, UK PROGRAMME CHAIRS Gibin Powathil, Swansea University, UK Marco Ceccarelli, University of Rome Tor Vergata, Italy SPECIAL SESSION CHAIRS Jiaxiang Zhang, Swansea University, UK Rex Ying, Yale University, USA SPONSORSHIP CHAIRS Daniele Cafolla, Swansea University, UK Raoul van Loon, Swansea University, UK PUBLICITY CHAIRS Lu Zhang, Swansea University, UK Beiyu Lin, University of Nevada, USA PUBLICATION CHAIR Jingjing Deng, Durham University, UK *6. SPONSORS* Gold: - Technis Blu - Infordata Silver: - Amicus Therapeutics Bronze: - Zienkiewicz Institute for Modelling, Data and AI - IET Institution of Engineering and Technology Your Researcher Sponsor: - Elsevier Journal of Theoretical Biology Best Paper Award Sponsor: - Springer *7. CONTACT* contact(a)aiih.cc

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Last call: Submit your IP abstract today for INCF Neuroinformatics Assembly!
by Heather Topple May 6, 2024

May 6, 2024

Today is the deadline to submit Investigator Presentation abstracts for INCF Neuroinformatics Assembly 2024: Brain Meets AI. Apply today to speak at Assembly! *Deadline: May 06* *Session topics include* - Data standards & reproducibility - Large-scale databasing & mega-analysis - Collaborative tools & more! Submit your abstract: bit.ly/INCFabstracts *Keynote speakers* Elisabeth Bik, Microbiome Digest Viktor Jirsa, INS Danilo BzDok, MILA Timo Dickscheid, Julich Research Hanchuan Peng, SEU-ALLEN /The INCF Team International Neuroinformatics Coordinating Facility Secretariat Karolinska Institutet. Nobels väg 15A, SE-171 77 Stockholm. Sweden <https://www.google.com/maps/search/Nobels+v%C3%A4g+15A,+SE-171+77+Stockholm…> incf.org neuroinformatics.incf.org

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World wide VVTNS series: Wednesday, May 8 at 11am (EDT), Douglas Zhou, Jiatong University| "Neuronal network reconstruction through causality measures"
by David Hansel May 5, 2024

May 5, 2024

[image: VVTNS.png] https://www.wwtns.online - on twitter: wwtns@TheoreticalWide You are cordially invited to the lecture given by Douglas Zhou Jiatong University on the topic of "Neuronal network reconstruction through causality measures*"* The lecture will be held on zoom on *May 8, 2024*, at *11:00 am EDT * To receive the zoom link: https://www.wwtns.online/register-page *Abstract: *Understanding the causal connectivity within a network is crucial for unraveling its functional dynamics. However，the inferred causal connections are fundamentally influenced by the choice of causality measure employed, which may not always align with the actual structural connectivity of the network. The relationship between causal and structural connectivity, especially how different causality measures affect the inferred causal links, requires further exploration. In this talk, we examine nonlinear networks characterized by pulse signal outputs, such as spiking neural networks, using four prevalent causality measures: time-delayed correlation coefficient, time-delayed mutual information, Granger causality, and transfer entropy. We provide a theoretical analysis of the interconnections among these measures when applied to pulse signals. Utilizing both a simulated Hodgkin–Huxley network and an empirical mouse brain network as case studies, we validate the quantitative relationships between these causality measures. Our results show a strong correspondence between the causal connectivity derived from any of these measures and the actual structural connectivity, thereby establishing a direct linkage between them. We highlight that structural connectivity in networks with output pulse signals can be reconstructed on a pairwise basis, without needing global information from all network nodes, effectively avoiding the curse of dimensionality. Our approach offers a robust and practical methodology for reconstructing networks based on pulse outputs. *About VVTNS : Created as the World Wide Neuroscience Seminar (WWTNS) in November 2020 and renamed in homage to Carl van Vreeswijk in Memoriam (April 20, 2022), its aim is to be a platform to exchange ideas among theoreticians. Speakers have the occasion to talk about theoretical aspects of their work which cannot be discussed in a setting where the majority of the audience consists of experimentalists. The seminars, **held on Wednesdays at 11 am ET,** are 45-50 min long followed by a discussion. The talks are recorded with authorization of the speaker and are available to everybody on our YouTube channel.* ᐧ ᐧ ᐧ ᐧ ᐧ -- "В каждой шутке есть доля шутки" 'Life is good ..' (Carl van Vreeswijk, 1962-2022) --------------------------------------- David Hansel Directeur de Recherche au CNRS Co-Group leader Cerebral Dynamics Plasticity and Learning lab., CNRS 45 rue des Saints Peres 75270 Paris Cedex 06 Tel (Cell): +33 607508403 - Fax (33).1.49.27.90.62 ᐧ

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Postdoc for 3 years -- How to be flexible – organizing and optimizing task-dependent information processing in the visual system
by David Rotermund May 3, 2024

May 3, 2024

The Computational Neurophysics lab at the University of Bremenheaded by Dr. Udo Ernst offers at the earliest date possible: *Postdoc in Computational Neuroscience **for 3 years* In this project we want to study organization and optimization of flexible information processing in neural networks, with specific focus on the visual system. You will use network modelling,numerical simulation, and mathematical analysis to investigate fundamental aspects of flexible computation such as task-dependent coordination of multiple brain areas for efficient information processing, as well as the emergence of flexible circuits originating from learning schemes which simultaneously optimize for function and flexibility. These studies will be complemented by biophysically realistic modelling and data analysis in collaboration with experimental work. Here we will investigate selective attention as a central aspect of flexibility in the visual system, involving task-dependent coordination of multiple visual areas. ============ = Official text = ============ The Computational Neurophysics lab at the University of Bremenheaded by Dr. Udo Ernst offers at the earliest date possible: *Postdoc in Computational Neuroscience (f/m/d)* German federal pay scale EG13 TV-L (100 %) *limited for 3 years*(according to § 2 WissZeitVG) *How to be flexible – organizing and optimizing task-dependent information processing in the visual system* In this project we want to study organization and optimization of flexible information processing in neural networks, with specific focus on the visual system. You will use * network modelling, * numerical simulation, * and mathematical analysis to investigate fundamental aspects of flexible computation such as task-dependent coordination of multiple brain areas for efficient information processing, as well as the emergence of flexible circuits originating from learning schemes which simultaneously optimize for function and flexibility. These studies will be complemented by biophysically realistic modelling and data analysis in collaboration with experimental work done in the lab of Prof. Dr. Andreas Kreiter, also at the University of Bremen. Here we will investigate selective attention as a central aspect of flexibility in the visual system, involving task-dependent coordination of multiple visual areas. *Requirements**:* Ideal candidates will have a PhD in computational neuroscience, physics, computer science or related fields. They must have a strong background in neural networks, dynamical systems, mathematics and/or data analysis, and experience in programming (we use Python in our lab). Above all, you must be highly motivated, responsible, have a strong desire to learn and be able to work proactively in an international research environment. Fluency in English (both written and spoken) is required. The Computational Neurophysics Lab offers a good working atmosphere, direct involvement in international research and attractive facilities. You will have the opportunity to link your research to a wide range of other topics being studied in our lab, such as collective dynamics in neural systems, information processing in deep spiking networks, and the development of visual cortex prostheses. *General hints:* Open to unconventional approaches in research and teaching, the University of Bremen has retained its character as a place of short distances for people and ideas since its founding in 1971. With a broad range of subjects, we combine exceptional performance and innovative potential. As an ambitious research university, we stand for research-based learning approaches and a pronounced interdisciplinary orientation. We actively pursue international scientific cooperation in a spirit of global partnership. Today, around 23,000 people learn, teach, research and work on our international campus. In research and teaching, administration and operations, we are firmly committed to the goals of sustainability, climate justice and climate neutrality. Our Bremen spirit is expressed in the courage to dare new things, in supportive cooperation, in respect and appreciation for each other. With our study and research profile and as part of the European YUFE network, we assume social responsibility in the region, in Europe and in the world. The University of Bremen is family-friendly, diverse and sees itself as an international university. We therefore welcome all applicants regardless of gender, nationality, ethnic and social origin, religion/belief, disability, age, sexual orientation and identity. As the University of Bremen intends to increase the proportion of female employees in science, women are particularly encouraged to apply. Disabled applicants will be given priority if their professional and personal qualifications are essentially the same. For questions of the research project please contact: Dr. Udo Ernst, E-Mail: _udo(a)neuro.uni-bremen.de_ For general information on this topic, see also: _https://www.uni-bremen.de/ernstlab <https://www.uni-bremen.de/ernstlab>_ _Detailed instructions for applicants_ Your application must comprise: *Motivation letter* Your 1–2-page essay should address the following questions: * What is your background? What areas have you worked in previously, and how do you think this will help you in this role? * What attracts you to computational neuroscience? * What computational neuroscience problem(s) are you most interested in? * What is your motivation for joining our project? * What are your plans for your future career? * When will you definitely be able to begin? *Curriculum Vitae* Send a tabular CV with your contact details, and all stages of education and employment. *List of skills, awards, publications* List your skills, especially language skills (including level of proficiency), that you think might be useful for the job. Also list any awards you have received and any peer-reviewed publications, if you have any. *Contact details of two academic references* One of the referees should be your PhD and/or MSc supervisor. Please inform your referees before listing their names so that they are not surprised when we contact them. You can apply in English or German, whichever language you are more comfortable with. Please explicitly address each of the specified requirements in your application (see detailed instructions below), and send your application documents until *31.05.2024*by indicating the *job id A189-24 to* Universität Bremen Institut für Theoretische Physik Frau Agnes Janssen Hochschulring 18 D-28359 Bremen or as one PDF file by unencrypted electronic mail to: _ajanssen(a)neuro.uni-bremen.de <mailto:ajanssen@neuro.uni-bremen.de>_. We kindly ask you to send us only copies (no portfolios) of your application documents, as we cannot return them. They will be destroyed after the selection process has been completed. Please note that incomplete applications will not be considered.

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EBRAINS Brain Simulation Workshop 2024 - Bilbao, 3-7 June
by Mathieu Desroches May 3, 2024

May 3, 2024

Dear all, We are organising the next EBRAINS <https://www.ebrains.eu/> event in Bilbao from 3rd to 7th June. All infos regarding the registration and the scientific program are available on the event’s webpage: https://www.bcamath.org/events/ebrains2024/en/ Best, Mathieu. --------------------------------------------------------------------- Dr. Mathieu Desroches Research Director (Directeur de Recherche) MathNeuro <https://team.inria.fr/mathneuro/> Project Team Leader Inria Branch of the University of Montpellier, France https://www-sop.inria.fr/members/Mathieu.Desroches/

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Activities for Students and Postdocs at the FENS Forum 2024
by SHSC FENS May 3, 2024

May 3, 2024

Apologies for cross-posting. Dear all, I would like to bring your attention to the activities for students and postdocs at the *FENS Forum 2024 <https://fensforum.org/>* (25th-29th of June in Vienna, Austria), organised by students from the host societies, the Austrian Neuroscience Association and Hungarian Neuroscience Society. To help you network during the forum, we invite you to sign up for the following events (the *activities are for free*, but you need to be a Forum participant to be eligible): - Meet the Experts <https://www.austrian-neuroscience.at/FENS2024-SHSC_Meet_the_Expert/>: a *coffee break session with the conference speakers*, where we pair you with 4 other students and an expert on your topic of interest at a cafe near the conference venue. Coffee and cake are paid by us! - Student buddy system <https://www.austrian-neuroscience.at/FENS2024-SHSC_buddysystem/>: we pair you with a local neuroscientist to help you navigate the city, answer questions, and make your trip to FENS 2024 unforgettable! *The deadline for signing up is May 15th.* Also check out our *booth at the conference venue*! There you can get advice for travel, restaurants, leisure, the scientific program, and other surprises! You will also find the brochure "Vienna Unveiled: Uncover Hidden Gems and Local Favorites" featuring our favorite spots in town. For detailed information please check out our website: austrian-neuroscience.at/FENS2024-SHSC/ <https://www.austrian-neuroscience.at/FENS2024-SHSC/> And for updates about our activity follow us on social media: instagram.com/austrianneuroscience/ <https://www.instagram.com/austrianneuroscience/> facebook.com/Austrian.Neuroscience.Association <https://www.facebook.com/Austrian.Neuroscience.Association> linkedin.com/in/austrian-neuroscience-association <https://www.linkedin.com/in/austrian-neuroscience-association> twitter.com/AustrianNeuros1 If you have any questions please email us at: shscfens(a)gmail.com See you at the FENS Forum 2024! Kind regards, FENS Forum Student Host Society Committee

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