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Last call: abstract submission for the 2024 Neuroinformatics Assembly
by Helena Ledmyr June 7, 2024

June 7, 2024

Join the INCF community at the Neuroinformatics Assembly 2024 in Austin, Texas, Sept 23-27! This year's theme is "Brain meets AI: pioneering the future of neuroinformatics". We have two days of training courses after the main conference, see all the sessions at https://neuroinformatics.incf.org/2024/sessions. See the conference topics and submit your abstract today at bit.ly/INCFabstracts We hope to see you in Austin! ----------------------------- Helena Ledmyr, PhD *Director* *Development and Communications* <https://neuroinformatics.incf.org/> International Neuroinformatics Coordinating Facility Secretariat Karolinska Institutet. Nobels väg 15A, SE-171 77 Stockholm. Sweden Email: helena.ledmyr(a)incf.org Phone: +46 8 524 870 35 incf.org

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ReLab: Rewilding Ethology Laboratory, Konstanz, August 26-30 2024
by Mateusz Kostecki June 7, 2024

June 7, 2024

Hello! We are super happy to announce our next event, organized in collaboration between us, Center for the Advanced Study of Animal Behaviour, University of Konstanz and Max Planck Institute of Animal Behaviour! Are you ready for an expedition into the multifarious world of animal behaviour, where the lab meets the wild? Join us for RELab, *a unique experimental workshop in the scenic location of Lake Constance, Germany.* Unlike well-established scientific frameworks relying on synthetic stimuli, working with real, complex naturalistic stimuli presents unique challenges in tractability, interpretability, and relevance. This workshop will bring together* 16 exceptional early-career scientists and 5 renowned principal investigators in the fields from systems neuroscience to ethology*, to tackle conceptual and practical challenges in analyzing natural behaviours. RELab is not just about conventional lectures; it’s about *prototyping paradigms and hacking them together in both natural and controlled environments*. RELab is designed as a dialogue and a collective journey of discovery. For 5 days, participants will engage in: - Naturalist hikes and field experiments, exploring the natural habitats around Lake Constance (Bodensee). - Laboratory sessions employing advanced technologies such as virtual reality, collaborative activities integrating field and lab perspectives in real-time. - Thought-provoking talks and discussions with leading experts, aiming to build a new understanding of natural behaviours. Come enjoy the beautiful Bodensee region for an adventure of intellectual exploration, collaborative discovery, and vibrant community building. RELab is supported by the Centre for the Advanced Study of Collective Behaviour (CASCB) and Nencki Open Lab and it will be hosted by the Max Planck Institute of Animal behaviour, ensuring a high-quality, inclusive, and stimulating environment. Together, we aim to lay the groundwork for achieving new meaningful insights into behaviour in a complex world where standardized procedures may not exist. *Rewilders* Anna Stöckl (CASCB, Dept. of Biology, Uni Konstanz) Armin Bahl (MPI-AB, CASCB, Dept. of Biology, Uni Konstanz) Einat Couzin-Fuchs (MPI-AB, CASCB, Dept. of Biology, Uni Konstanz) Katja Reinhard (International School for Advanced Studies, Trieste) Raghavendra Gadagkar (Indian Institute of Science, Bengaluru) *Where, When, and How* RELab will be held on the Lake of Constance, Germany, 26-30 August 2024 (arrival on August 25, departure on August 31). The fee is EUR 750, and includes accommodation in shared double rooms at the venue and all meals for the duration of the workshop (breakfasts, lunches and dinners); it also includes dinner on the night before the workshop begins. We are securing funds for fee waivers, please specify in the registration form if you need one. PhD students and postdocs from systems neuroscience or animal behavior, as well as related disciplines, are encouraged to apply. We will also consider exceptional applications from pre-PhD students. How to apply: The application form is available here https://docs.google.com/forms/d/e/1FAIpQLSftN3DG-PKhaqN30Jmgia4_3YKQJoL6g_R…. . The deadline for application is 24 June 2024. For inquiries, please contact the organizers. *Organizers:* August Paula (MPI-AB, CASCB, Dept. of Biology, Uni Konstanz) Cyrill Fromm (MPI-AB, CASCB, Dept. of Biology, Uni Konstanz) Iacopo Hachen (MSCA Fellow, MPI-AB, Dept. of Biology, CASCB, Uni Konstanz) Kajal Kumari (MPI-AB, CASCB, Dept. of Biology, Uni Konstanz) Mateusz Kostecki (Nencki Institute) Pavan Kaushik (MPI-AB, CASCB, Dept. of Biology, Uni Konstanz) Ruiheng Wu (MPI-AB, CASCB, Uni Konstanz) Best! NOL Team -- --- Mateusz Kostecki PhD Student Knapska Laboratory Nencki Institute 02-093 Warsaw, Pasteura 3, Poland https://twitter.com/mtkostecki https://evolvingbehavior.blog/

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Research software engineer position at Zuckerman Institute (Columbia University)
by Matthew R. Whiteway June 5, 2024

June 5, 2024

Columbia University's Zuckerman Mind Brain Behavior Institute is seeking a research software engineer to work closely with both computational and experimental neuroscience labs within the Zuckerman Institute ( https://zuckermaninstitute.columbia.edu/) and the International Brain Lab ( https://www.internationalbrainlab.com/) to help develop and maintain cutting edge software tools for the analysis of large-scale behavioral video data. Other responsibilities include: • Assist labs with deploying this software in their data processing pipelines • Respond to user issues provided through various channels (Github issues, Discord, Slack) by providing bug fixes • Engage in software dissemination efforts including written documentation, video tutorials, and assisting with workshops • Assist machine learning researchers in incorporating new algorithms into the software Please see the job posting for more information: https://apply.interfolio.com/147471 Matt Whiteway Associate Research Scientist, Zuckerman Institute, Columbia University Data Scientist, International Brain Laboratory

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Lipari School on Computational Neuroscience: Model, Biology and Clinical Application
by Jolivet, Renaud (MACSBIO) June 5, 2024

June 5, 2024

(Sent on behalf of the organisers.) Dear Colleagues, it is with great pleasure that we invite you to attend the "Lipari School on Computational Neuroscience: Model, Biology and Clinical Application," to be held from 25 to 31 August 2024 on the beautiful island of Lipari, Italy. This prestigious event will bring together internationally renowned experts in the fields of neuroscience and biology and will discuss computational neuroscience, bioinformatics and their clinical applications. It will be a unique opportunity to deepen our knowledge, share experiences and discuss the latest research and innovations in these fascinating fields. The school programme will include: - Lectures given by top-notch lecturers. - Interactive workshops and practical sessions. - Roundtables on topical issues and future challenges. - Networking opportunities with professionals and researchers from all over the world. Lipari, with its breathtaking landscape and rich cultural history, will provide an ideal environment to stimulate scientific discussions and create new collaborations. Please visit our website [Lipari School - J.T. Schwartz International School for Scientific ...Lipari Schoolhttps://liparischool.it<https://www.google.it/url?sa=t&source=web&rct=j&opi=89978449&url=https://li…>] for further details on the program, registration and accommodation options. We are certain that the "Lipari School on Computational Neuroscience" will be an enriching and stimulating experience, and we sincerely hope to welcome you to Lipari this August. Please spread the word about this initiative among your students, PhD students and young researchers, so that they can take advantage of this valuable opportunity for training and professional growth. Kind regards, [cid:C2F4D388-6151-4EAD-AF66-A845749B3F61] Dott.ssa Rosa Musotto Institute for Biomedical Research and Innovation (IRIB) National Research Council (CNR) Via Leanza, Mortelle 98164 Messina - Italy rosy.musotto(a)irib.cnr.it<mailto:rosy.musotto@irib.cnr.it> romusotto(a)unime.it<mailto:romusotto@unime.it>

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NEST Conference 2024 — Register by Friday!
by Hans Ekkehard Plesser June 4, 2024

June 4, 2024

Dear Colleagues, We are looking forward to an exciting Virtual NEST Conference 2024 on Monday/Tuesday 17./18. June 2024. This years program includes keynotes by Tadashi Yamazaki, University of Electro-Communications, Japan Diversity and inclusion: Distributed simulation of multiple brain and body models in multiple simulators on multiple computers across multiple organizations Benedetta Gambosi, University of Pavia A multiarea model predicts the changes in thalamocortical beta oscillations caused by dopamine depletion in basal ganglia and cerebellum Tobias Gemmeke, RWTH Aachen Accelerated Simulation of Biological Neural Networks Behnam Ghazinouri, Ruhr-Universität Bochum The attractor dynamics of behavioral flexibility in spatial and reversal learning complemented by contributed talks, posters and a workshop Introducing Arbor. For the full program an to register, please see https://nest-simulator.org/conference. Registration deadline is this FRIDAY, 7 June 2024. We are looking forward to seeing you at the NEST Conference 2024! Hans Ekkehard Plesser -- Prof. Dr. Hans Ekkehard Plesser Department of Data Science Faculty of Science and Technology Norwegian University of Life Sciences PO Box 5003, 1432 Aas, Norway Phone +47 6723 1560 Email hans.ekkehard.plesser(a)nmbu.no<mailto:hans.ekkehard.plesser@nmbu.no> Home http://arken.nmbu.no/~plesser

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Post-doc position [LAST CALL]: How long-term memories affect decision making and rule selection?
by Pablo Jercog June 4, 2024

June 4, 2024

A postdoc position is available at the Department of Functional and Systems Neurobiology of the Cajal Institute (https://cajal.csic.es/en/home/) part of the Spanish National Research Council (CSIC) in collaboration with the Department of Engineering at the University of Cambridge. The aim of this position is to develop a new framework for the analysis and interpretation of animal behavior and electrophysiological data from a high-throughput memory-based behavioral paradigm ( https://www.frontiersin.org/articles/10.3389/fnbeh.2020.00064/full) developed in the Jercog Lab. Such a framework will involve different theories and modelling approaches such as reinforcement learning, stochastic decision processes, and history-dependent biases over a range of timescales from seconds to months, under the co-supervision of Yashar Ahmadian <https://cbl.eng.cam.ac.uk/ahmadian/>, University of Cambridge. The overarching aim of the project is to understand how long-term memories affect the decision making process in a volatile environment, focusing in particular on the hippocampal contribution to control (e.g. Lengyel & Dayan 2008 <https://proceedings.neurips.cc/paper_files/paper/2007/file/1f4477bad7af3616…>, Stachenfled et al. 2017), and using approaches such as rational control (Wu et al 2020 <https://www.pnas.org/doi/full/10.1073/pnas.1912336117>) to infer the internal beliefs and models used by animals in the task. Our lab is part of a larger network of Spanish neuroscience institutes including the CINC <https://www.cinc.csic.es/research-areas/>, the Neurotech <https://espanadigital.gob.es/lineas-de-actuacion/spain-neurotech> and the IN <https://in.umh-csic.es/en/>. The institute is located in the center of Madrid, one of the most exciting cities in the south of Europe, well connected with the rest of the world. Candidates should have a Ph.D. in computational neuroscience or a related field. Prior experience with the analysis of animal behavior, neuroimaging, machine learning, and/or computational modeling will be valued. Competitive financial support is provided by the Spanish Ministry of Science. *INITIAL APPOINTMENT:* two years. *APPLICATION:* Send a curriculum and motivation letter with a list of three contacts for recommendation letters to pjercog(a)gmail.com. Informal inquiries are welcome. *DEADLINE:* applications will start to be reviewed on June 17th until the position is filled. *STARTING DATE:* before September 2024. -- Pablo Jercog, Ph.D. Team Leader Instituto Cajal, CSIC Avda. del Doctor Arce, 37 (Room C-11) Madrid, Madrid, 28002, Spain cell: +34 620562808 email: pjercog(a)gmail.com Lab webpage <https://sites.google.com/view/pablojercogteam/>

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Call for contribution and registration for Systems Vision Science Virtual Symposium July 12, 2024
by Pavlovic, Maria June 4, 2024

June 4, 2024

Systems Vision Science Virtual Symposium: July 12th, 2024 -------------------------------- <https://summerschool.lizhaoping.org/symposium-2024/> Systems Vision Science Virtual Symposium takes place on July 12th, 2024, 15:00-19:00 German time, as the end of the <https://summerschool.lizhaoping.org/virtual-systems-vision-science-summer-s chool-symposium-2024/> Systems Vision Science Virtual Summer School. This summer school and symposium are the virtual editions of the onsite <https://summerschool.lizhaoping.org/> summer school and symposium in 2023. We invite contribution and free registrations for this symposium. The presentations at the symposium will include two keynote speeches (30 minutes each) and contributed speeches (15 minutes each). The topics of the presentations will be any topic of <https://www.lizhaoping.org/Systems-Vision-Science.html> Systems Vision Science, which combines computational, behavioral, and neuroscience methods to discover and investigate functions and algorithms for vision in various brain regions and their implementations in neural circuits. -------------------------------- To contribute or register, please fill out our registration form (including an abstract for contribution), which can be found here: <https://summerschool.lizhaoping.org/wp-content/uploads/2024/06/Form-to-regi ster-or-submit-a-contribution-to-the-SVS-symposium-2024.docx> https://summerschool.lizhaoping.org/Form-to-register-or-submit-a-contributio n-to-the-SVS-symposium-2024.docx and send the filled form to svs.summerschool(a)tue.mpg.de <mailto:svs.summerschool@tue.mpg.de> Please direct inquiries to svs.summerschool(a)tue.mpg.de <mailto:svs.summerschool@tue.mpg.de> . -------------------------------- Organizing Team Li Zhaoping Maria Pavlovic Junhao Liang Ali Gholamzadeh Max Planck Institute for Biological Cybernetics University of Tuebingen www.lizhaoping.org <http://www.lizhaoping.org>

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Abstracts closing Friday, early bird reg, & more - INCF Neuroinformatics Assembly 2024
by Heather Topple June 4, 2024

June 4, 2024

Hello! We at INCF would appreciate it if you could forward the information below to your relevant networks in neuroscience, AI, computer and data science. Thank you! /Heather INCF Project Assistant *Join us at the INCF Neuroinformatics Assembly 2024 <https://neuroinformatics.incf.org/> on Sep 23-25 at the University of Texas at Austin!* The meeting is followed by 3 training courses: Driving collaboration in neurophysiology with NWB and DANDI, Introduction to reproducible neuroimaging data processing and analysis, and DataJoint pipelines for your neuroscience experiments on Sep 26-27. The INCF Assembly is a unique venue where neuroscience standards developers, infrastructure providers, and software developers have the opportunity to interact with the research community to share the latest advancements in neuroinformatics. This year's theme Brain Meets AI: Pioneering the Future of Neuroinformatics Abstract submission <https://neuroinformatics.incf.org/abstract-submission> and early bird registration <https://neuroinformatics.incf.org/register> are open - make sure to register before Jun 28 to get the early bird price! *Abstract submission is open until Fri Jun 7 via this link <https://neuroinformatics.incf.org/abstract-submission>.* Note: You need to be signed in to submit an abstract, but you don’t need to be an INCF member to create an account. Our keynote speakers are Elisabeth Bik (Microbiome Digest), Timo Dickscheid (Jülich Research Cente), Hanchuan Peng (SEU-ALLEN Joint Center), Danilo Bzdok (Mila - Quebec Artificial Intelligence Institute), and Viktor Jirsa (Institut de Neurosciences des Systemès). See you at Assembly 2024! /The INCF Team ---------------------------- Heather Topple, BSc *Project Assistant* *Development and Communications* <https://neuroinformatics.incf.org/> International Neuroinformatics Coordinating Facility Secretariat Karolinska Institutet. Nobels väg 15A, SE-171 77 Stockholm. Sweden <https://www.google.com/maps/search/Nobels+v%C3%A4g+15A,+SE-171+77+Stockholm…> Email: heather(a)incf.org Phone: +46 085 248 70 65 incf.org neuroinformatics.incf.org

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World wide VVTNS series: Wednesday, June 5 at 11am (EDT), Stephanie Palmer, University of Chicago | Using ML tools in neuroscience to define optimality in complex natural behaviour
by David Hansel June 2, 2024

June 2, 2024

[image: VVTNS.png] https://www.wwtns.online - on twitter: wwtns@TheoreticalWide You are cordially invited to the lecture given by Stephanie Palmer University of Chicago on the topic of *Using ML tools in neuroscience to define optimality * *in complex natural behaviour* The lecture will be held on zoom on *June 5, 2024*, at *11:00 am EDT * To receive the link: https://www.wwtns.online/register-page *Abstract: *Biological systems must selectively encode partial information about the environment, as dictated by the capacity constraints at work in all living organisms. For example, we cannot see every feature of the light field that reaches our eyes; temporal resolution is limited by transmission noise and delays, and spatial resolution is limited by the finite number of photoreceptors and output cells in the retina. Classical efficient coding theory describes how sensory systems can maximize information transmission given such capacity constraints, but it treats all input features equally. Not all inputs are, however, of equal value to the organism. Our work quantifies whether and how the brain selectively encodes stimulus features, specifically predictive features, that are most useful for fast and effective movements. We have shown that efficient predictive computation starts at the earliest stages of the visual system in the retina. We borrow techniques from machine learning, statistical physics, and information theory to assess how we get terrific, predictive vision from these imperfect (lagged and noisy) component parts. In broader terms, we aim to build a more complete theory of efficient encoding in the brain, and along the way have found some intriguing connections between approaches to coarse graining in biology, machine learning, and physics. *About VVTNS : Created as the World Wide Neuroscience Seminar (WWTNS) in November 2020 and renamed in homage to Carl van Vreeswijk in Memoriam (April 20, 2022), its aim is to be a platform to exchange ideas among theoreticians. Speakers have the occasion to talk about theoretical aspects of their work which cannot be discussed in a setting where the majority of the audience consists of experimentalists. The seminars, **held on Wednesdays at 11 am ET,** are 45-50 min long followed by a discussion. The talks are recorded with authorization of the speaker and are available to everybody on our YouTube channel.* ᐧ ᐧ ᐧ ᐧ

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Post-doc position available - Rennes, France - Neuro-inspired models of recurrent epileptic seizures
by fabrice.wendling＠inserm.fr May 31, 2024

May 31, 2024

Post-doc position offer (ref: INSERM-RECSEIZ) Neuro-inspired models of recurrent epileptic seizures for the investigation of mechanisms underlying repeated tDCS sessions Context. Epilepsy refers to a neurological disorder that affects about 1% of the general population. Recent findings indicate that non-invasive brain transcranial current stimulation (tCS) is safe and of therapeutic promise in epilepsy. However, it is not yet indicated as a standard treatment due to major scientific limitations: unknown mechanisms of action, insufficient account for patient-specific factors, poor understanding of short- and long-term effects. The ambition of the GALVANI Project (ERC-SyG 2019; 2020-26) is to transform the care of a large fraction of patients living with drug-resistant epilepsies by solving a fundamental problem: to efficiently target and control large-scale epileptic brain networks with tCS-induced neuromodulatory weak electric fields (https://www.galvani-lab.eu/) Rationale. The mechanisms underlying long-term effects of neuromodulation induced by weak electric fields remain poorly understood. To gain insights into these mechanisms, a new generation of experimentally-validated computational “hybrid” brain models is being developed in the project. These models combine neurophysiological models of neuronal networks with biophysical models of weak field effects. We recently developed a full human computational brain model able to generate realistic surface EEG and intracranial signal similar to those recorded in epileptic patients (see Wendling et al., CLINPH, 2024). Objective. The objective of the proposed research position is to design novel neuro-inspired models able to explain why and how the repetition of tDCS sessions (over days and weeks) impacts the seizure occurrence frequency. Methods. Mesoscale (neuronal population level) computational models allowing for the simulation of a single epileptic seizure will be used. They will be extended to account for the recurrence of seizures, as observed in human focal epilepsies. Then, tCS-induced weak electric fields will be integrated into the models and their cumulative effects on seizure occurrence will be studied, explaining why some patients respond to multi-sessions of tDCS while others do not. Models will use the Neural Mass Model (NMM) formalism. They will be developed in Python. They will extend models developed in the lab. Strong background is available. Scientific domains. Engineering (computational, biomedical); Physics (biophysics, electromagnetism); neuroscience; Medicine (neurology); Computer Science (computing in maths, engineering and Medicine) Scientific environment. GALVANI involves three partners: LTSI-Inserm (Rennes), AMU-APHM (Marseille) and Neuroelectrics (Barcelona). It is intended to develop the next generation of brain stimulation solutions. GALVANI can be viewed as a distributed lab (Rennes-Barcelona-Marseille) working under a common policy to ensure coherence of research and intense collaboration and cross-fertilization. Fellows will be co-supervised in a unique, shared environment with exposure to science, technology and clinical experience. Candidate profile. The research project is at the interface between biomathematics (neuro-inspired models), biophysics (electric field models), and neuroscience/neurology (epilepsy). The Post-doc fellow (PhD+experience) will preferably have a strong background in computational neuroscience/systems biology or in electrical engineering with experience in bio-signal processing. Knowledge in electrophysiology and/or EEG analysis would be an asset. The post-doc fellow will join a multidisciplinary team including research scientists in biomedical engineering, neurophysiological modeling, bio-physics, signal processing, electrophysiology, neurology. Contract The position will be opened Sep. 1st, 2024. The contract is for 2 years with possible extension (1 year). The competitive salary will be according to experience (2600 Euros net, minimum). The candidate will also have access to the French system benefits. Location in the city of Rennes, France. LTSI-Inserm laboratory, University of Rennes. In addition, the post-doc fellow will have the opportunity to perform visits and to actively collaborate with engineers, researchers and clinicians of the Marseille & Barcelona groups. Contact (please provide resume, cover letter and 2 reference letters) Fabrice Wendling (DR Inserm, LTSI, France) Email: fabrice.wendling(a)inserm.fr. https://perso.univ-rennes1.fr/fabrice.wendling

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