- Comp-neuro - lists.cnsorg.org

Structural-functional brain modules: PhD position at BioCruces Institute, Bilbao, Spain
by Paolo Bonifazi April 12, 2016

April 12, 2016

Within the Computational Neuroimaging group of Prof. Jesus Cortes at the BioCruces Health Research Institute (Bilbao, Spain), we are looking for a PhD student to develop and carry on a project aimed at identifying brain-connectivity biomarkers/descriptors(predictors) for brain pathologies/functional states. The project will rely on subjects/patients databases both acquired locally at the Cruces University Hospital, or provided through external regional/international collaborations or freely available on the web. The core of the study is based on the structural-functional brain modules, recently described in “A novel brain partition highlights the modular skeleton shared by structure and function” ( http://www.nature.com/articles/srep10532) and identified by reconstructing simultaneously on the same subjects brain connectivity networks, using functional and diffusion MRI. The PhD candidate will be also involved on a longitudinal multi-scale study of epileptic networks combining MRI and electrophysiological recordings in epileptic patients undergoing surgery. The project has been recently approved within the RETOS Spanish governmental grants. The PhD candidate will be closely supervised by Prof. J. M. Cortes ( http://www.jesuscortes.info/jesusweb/) and Dr. P. Bonifazi ( http://www.ikerbasque.net/paolo.bonifazi) and will work in close collaboration with the MDs of Neurology, Neurophysiology and Neurosurgery Division of the Cruces Hospital. The contract will be up to 3/4 years, with a gross salary of € 20,600 per year, with social security contributions and other recruitment costs paid by the host research institute (BioCruces). Deadline for application is May the 11th. Candidates with a deep interest in Neuroscience or Complex Networks and preferably with a solid background in Physics, Mathematics, Engineering or Medicine, are invited to send a motivation letter and the names of two referee to Dr. P. Bonifazi at paol.bonifazi(a)gmail.com. We look forward your interest, Yours Paolo Bonifazi

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PhD positions on Multiscale Modelling of the Neuromuscular System for Deep Brain Stimulation
by Olga Grant April 11, 2016

April 11, 2016

Background Deep Brain Stimulation (DBS) is an effective, safe and reversible method for treating the symptoms of Parkinson’s disease and other neurological disorders. It involves implanting electrodes in the brain to stimulate neurons responsible for symptoms including tremor, slowed movement and stiffness. Despite its success, the methods by which DBS works are not yet known and many questions remain to be answered in order to realize its full potential. Research within our group aims to improve our understanding of DBS and to identify new approaches for stimulation using computer models of networks of neurons within the brain and the neuromuscular system. Applications are invited for two full time PhD positions focusing on 1) Development of computational models of the neuromuscular system and 2) Closed loop control of deep brain stimulation for Parkinson’s disease. The start date for both projects will be September 2016 Who Should Apply Applicants should have, or expect to obtain, a first or upper second class honours Bachelors or Masters degree in Electrical, Electronic or Biomedical Engineering (or a related discipline). Suitable candidates will have a strong interest in biomedical/neural engineering and neuroscience. Excellent analytical, computer programming and communications skills are essential. Funding This project is funded by a European Research Council (ERC) Consolidator Grant. Studentships cover tuition fees for EU applicants and a tax free stipend of €18,000 per year. An annual allowance is provided for research consumables and for conference attendance. How to Apply Please send a cover letter describing your experience and interest in this project (1 page max), CV, and academic transcripts to Prof. Madeleine Lowery UCD School of Electrical & Electronic Engineering University College Dublin Belfield, Dublin 4 Ireland E-mail: neuromuscular(a)ucd.ie <mailto:neuromuscular@ucd.ie> Tel. +353 (1) 716 1911 ____________________________________ Dr Olga M Grant Research Project Manager School of Electrical & Electronic Engineering Tel +353 (1) 7161778

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CORRECTION: Job opportunity for Image Analysis Scientist at Salk
by Uri Manor April 11, 2016

April 11, 2016

The previous version of this announcement listed the job number as F142. The correct number is F143. I apologize for the inconvenience. WAITT ADVANCED BIOPHOTONICS CORE Job Opportunity – Image Analysis Scientist The Waitt Advanced Biophotonics Center has been established at the Salk Institute for Biological Studies as a state-of-the-art research hub to provide advanced and emerging imaging modalities to enable unprecedented insights into the inner workings of cells, tissues and organisms. We are seeking a highly motivated and experienced candidate in the field of computational image analysis to serve as an Image Analysis Scientist for the Biophotonics Core Facility. The Image Analysis Scientist will have a principal responsibility to collaborate with the other light and electron microscopy researchers in the Biophotonics Core and the Salk Institute to provide specific expertise for developing custom computer algorithms for complex and novel analyses of raw imaging data, computer data management and developing algorithms for microscopy operations. The Image Analysis Scientist will also develop and publish novel imaging and image analysis techniques in collaboration with the Core Director and Salk faculty. The Image Analysis Scientist will apply existing image processing software to 2D and 3D images and videos, and will also integrate data across different platforms (e.g. correlative EM). Finally, under the supervision and training of the Core Director, the Image Analysis Scientist will become familiar with the microscopes used in the facility, and develop expertise in using the equipment to acquire imaging data optimized for image analysis. Along with the Core Director, the Image Analysis Scientist will train Salk scientists on how to properly acquire high quality quantitative microscopy image data. This is a multi-faceted job that involves the following components: • Image Processing & Data Analysis - With the support of the Core Director, the incumbent will participate in the collaborative development of custom image data analysis and algorithm solutions. • Research Design & Participation - aiding Director and independently assisting users in design of imaging experiments. Educate facility users in the use of facility instrumentation and methods used therein for optimal acquisition of imaging data. • Data Collection & Presentation - collecting and managing data and helping to prepare data for publication & presentation. • User Training - guide and assist Salk researchers in the use of existing image acquisition and processing software. To Apply: http://www.salk.edu/about/careers/ (Job # F143) Uri Manor, Ph.D. DIRECTOR WAITT ADVANCED BIOPHOTONICS CORE PH (858) 453-4100 x2119 M (314) 406-7618 E umanor(a)salk.edu<mailto:tberggren@salk.edu> W http://bpho.salk.edu<mailto:tberggren@salk.edu> [cid:E4C48475-653C-4000-9B8C-437F759B2644@salk.edu] Salk Institute for Biological Studies 10010 N Torrey Pines Rd • La Jolla, CA 92037 WWW.SALK.EDU<http://www.salk.edu>

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Fully funded PhD position at BioCruces Health Research Institute, Bilbao, Spain
by Asier Erramuzpe Osakidetza April 11, 2016

April 11, 2016

BioCruces Health Research Institute (Bilbao, Spain) is looking for a PhD student who is a graduate in engineering and has completed a master, in its first year of doctorate or going into it this year. The pre-doc will work on an ongoing project since 2015, Neuroimaging in Parkinson's disease, funded by the ISCIII and the Michael J. Fox Foundation. The candidate will work primarily with MR imaging and to a lesser extent retinal images and analysis of cardiovascular signals. The PI of the project would be Juan Carlos Gómez-Esteban, neurologist, Head of group of Neurodegenerative Diseases in BioCruces and Movement Disorders and Parkinson Surgery in the Hospital of Cruces in collaboration with Dr. Iñigo Gabilondo. The website of the group: http://www.biocruces.com/bc5.01 Candidates should have a technical degree and knowledge of at least one programming language (python, matlab or R) and desirably knowledge of the packages SPM, FSL and Freesurfer. The contract will be up to 4 years (2 years extendable to 4 depending on the financing of the project), with a gross salary of € 20,600 per year. Social security contributions and other recruitment costs paid by BioCruces. Application dates are from April 12 to May 11. Candidates are invited to send a motivation letter and the names of one referee to Dr. Gabilondo by mail: igabilon(a)gmail.com Regards

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EEG Data Scientist Position at Stanford in Brain Network Connectivity Research
by Wei Wu April 10, 2016

April 10, 2016

The Laboratory of Amit Etkin, MD PhD at Stanford University is currently accepting applications for a Data Scientist position focused on sophisticated analyses of electroencephalography (EEG) data. The focus of this position is on understanding brain network function, relating EEG to functional magnetic resonance imaging (fMRI), and application of network analysis tools (e.g. graph theory, network-based statistics, etc). A particular emphasis will be on extending findings in the lab developed using fMRI connectivity analyses to EEG, which can be leveraged as an assessment tool in clinical psychiatric populations. Machine learning methods will also be employed to determine optimal EEG signals. The successful applicant will have an MS or PhD in Engineering, Statistics, Computer Science, Neuroscience, Neurophysiology, Psychology, or related fields. Experience with analysis of EEG data is required. Additionally, a strong programming background is important. Duties will also include manuscript preparation, presentation of findings at conferences, and contribution to the preparation of grants. Laboratory and Stanford resources include research-dedicated 3T and 7T MRI scanners, simultaneous EEG/fMRI, multiple high density EEG setups, and concurrent transcranial magnetic stimulation (TMS)/fMRI and concurrent TMS/EEG setups. Salary commensurate with experience. More information about our ongoing studies can be found at: http://etkinlab.stanford.edu<http://etkinlab.stanford.edu/>. [http://etkinlab.stanford.edu/images/thumb-home1.jpg]<http://etkinlab.stanford.edu/> Etkin Lab - Stanford University School of Medicine<http://etkinlab.stanford.edu/> etkinlab.stanford.edu The Etkin Lab strives to understand the neural basis of emotional disorders and their treatment, and to leverage this knowledge to develop novel treatment interventions. To apply, please send a curriculum vitae, a statement describing research interests and relevant background and three letters of recommendations, as well as relevant reprints/preprints of research articles to: Amit Etkin, MD, PhD Department of Psychiatry and Behavioral Sciences Stanford Neurosciences Institute Stanford University amitetkin(a)stanford.edu

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Call for Submissions to Workshop on Computational Biology at ICML 2016
by Sandhya Prabhakaran April 9, 2016

April 9, 2016

Hi, Please kindly circulate this to interested graduate students, post-docs and faculty. *Call For Submissions We invite submissions to the Workshop on Computational Biology < https://sites.google.com/site/compbioworkshopicml2016/> to be held in conjunction with ICML 2016 <http://icml.cc/2016/> conference in New York City, NY (June 19-24, 2016). In Computational Biology, there has been credible developments in many high-throughput technologies such as next-generation sequencing, CyToF and single-cell sequencing that enable data generation from many interesting biological systems. The gamut of novel algorithms in Machine Learning makes it very attractive to apply these methods to the challenging biological questions. It therefore only seems befitting to bring together researchers engaged in applying ML in Computational Biology to discuss recent advances in this interdisciplinary field and ongoing developments. We have invited several distinguished speakers from the Computational Biology community to discuss and present their current research. We also invite extended abstracts dealing with applications of ML methods or bioinformatics approaches to biological and biomedical data. *Important Dates Deadline for submissions : May 1, 2016 Notification of acceptance : May 10, 2016 Workshop date : June 24th 2016 (Friday, second day of workshops) *Submission All novel Computational Biology approaches are of interest to the workshop. We welcome original extended abstracts that present recently published work as well as preliminary ideas. Extended abstracts should not exceed 4 pages in length (plus 1 optional page for references) and should be in pdf format (one column, font size 12). The submission need not be anonymized. If the abstract concerns previously published work, please cite the original paper in the workshop submission. All accepted contributions shall be presented at the poster session. Awards for Best Poster Presentations will be sponsored by Google. In addition, a set of best submissions will also have the opportunity to present their work as Contributed Talks, and will receive Travel Awards sponsored by IBM Research. Accepted abstracts will have the option of being published on the workshop website. For authors who do not wish their abstracts to be posted online or become citable, please mention this in the workshop submission. Submissions should be made through the EasyChair < https://easychair.org/conferences/?conf=compbioworkshopicml2> system. *Invited Speakers Barbara Engelhardt, Princeton University Jennifer Listgarten, Microsoft Research Christina Leslie, Memorial Sloan Kettering Cancer Center *Registration All participants must register for the ICML 2016 conference. *Contact For workshop-related queries please contact: icml2016compbio(a)gmail.com We are looking forward to your submissions! Organizing Committee: Dana Pe'er, Columbia University Elham Azizi, Columbia University Sandhya Prabhakaran, Columbia University Olga Troyanskaya, Princeton University Edoardo Airoldi, Harvard University Volker Roth, University of Basel

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Image Analysis Job Opportunity at Salk Institute
by Uri Manor April 9, 2016

April 9, 2016

Hi everyone, Please spread the word far and wide! Thanks! WAITT ADVANCED BIOPHOTONICS CORE Job Opportunity – Image Analysis Scientist The Waitt Advanced Biophotonics Center has been established at the Salk Institute for Biological Studies as a state-of-the-art research hub to provide advanced and emerging imaging modalities to enable unprecedented insights into the inner workings of cells, tissues and organisms. We are seeking a highly motivated and experienced candidate in the field of computational image analysis to serve as an Image Analysis Scientist for the Biophotonics Core Facility. The Image Analysis Scientist will have a principal responsibility to collaborate with the other light and electron microscopy researchers in the Biophotonics Core and the Salk Institute to provide specific expertise for developing custom computer algorithms for complex and novel analyses of raw imaging data, computer data management and developing algorithms for microscopy operations. The Image Analysis Scientist will also develop and publish novel imaging and image analysis techniques in collaboration with the Core Director and Salk faculty. The Image Analysis Scientist will apply existing image processing software to 2D and 3D images and videos, and will also integrate data across different platforms (e.g. correlative EM). Finally, under the supervision and training of the Core Director, the Image Analysis Scientist will become familiar with the microscopes used in the facility, and develop expertise in using the equipment to acquire imaging data optimized for image analysis. Along with the Core Director, the Image Analysis Scientist will train Salk scientists on how to properly acquire high quality quantitative microscopy image data. This is a multi-faceted job that involves the following components: • Image Processing & Data Analysis - With the support of the Core Director, the incumbent will participate in the collaborative development of custom image data analysis and algorithm solutions. • Research Design & Participation - aiding Director and independently assisting users in design of imaging experiments. Educate facility users in the use of facility instrumentation and methods used therein for optimal acquisition of imaging data. • Data Collection & Presentation - collecting and managing data and helping to prepare data for publication & presentation. • User Training - guide and assist Salk researchers in the use of existing image acquisition and processing software. To Apply: Send CV to umanor(a)salk.edu<mailto:umanor@salk.edu> or http://www.salk.edu/about/careers/ (Job # F142) Uri Manor, Ph.D. DIRECTOR WAITT ADVANCED BIOPHOTONICS CORE PH (858) 453-4100 x2119 M (314) 406-7618 E umanor(a)salk.edu<mailto:tberggren@salk.edu> W http://bpho.salk.edu<mailto:tberggren@salk.edu> [cid:E4C48475-653C-4000-9B8C-437F759B2644@salk.edu] Salk Institute for Biological Studies 10010 N Torrey Pines Rd • La Jolla, CA 92037 WWW.SALK.EDU<http://www.salk.edu>

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Final deadline extension for contributions - Human Brain Project workshop on Neurorobotics @ Biorob2016
by Falotico Egidio April 8, 2016

April 8, 2016

Dear colleagues (with advance apologies for any cross-postings), We invite submissions for oral or poster presentations at the Human Brain Project workshop on Neurorobotics that will be organized on June 26th, at the sixth IEEE RAS/EMBS International Conference on Biomedical Robotics and Biomechatronics BioRob 2016, in Singapore. http://www.sinapseinstitute.org/biorob2016/workshops.php (Conference workshop page) http://sssa.bioroboticsinstitute.it/workshops/biorob2016 (Workshop page for contributions) Prospective authors should submit the extended abstract (one A4 page, in PDF format) by April 14th (final deadline extension), 2016. Notification of acceptance will be received no later than April 21th. For submission please refer to the following link: http://sssa.bioroboticsinstitute.it/workshops/biorob2016/HBPPaperSubmission… ABSTRACT Neurorobotics is already an established branch of robotics that in the last years, taking advantage from an increase in the accessibility of existing neuroscientific data and knowledge, allowed building robotic systems that can exhibit robustness, adaptability and several features of the human intelligence. Reciprocally, significant developments in robotics and machine learning put robotics in the service of neuroscience as experimental platforms or test-beds of brain models. In the last years, advanced insights and the increasing availability of cheap processing power has led Neurorobotics to follow two tracks of research with different goals and methods: The first track focuses on neuro-inspired computing paradigms that mimic nervous system functions based on Spiking Neural Networks. This does not only foster our understanding of biological systems but also contributes to future technical applications in artificial systems. In the past, limited processing power and the lack of appropriate models and tools shifted the focus of research far away from biological neural networks. Recently a number of projects like the US BRAIN Initiative and the Human Brain Project have taken up the challenge by combining efforts from the fields of neuroscience and computer science to enable the large scale modeling and simulation of biological neural networks with billions of spiking neurons. The second track, extending the theory of classical artificial neural networks, mostly relies on simpler neuron models but integrate them in novel network architectures. These networks are extensively used in robotics, allowing mimicking the function of some brain areas in order to reproduce complex behaviors with a reduced computational cost. This workshop seeks to present and discuss advances in neuroscientific models for cognition and new perspectives in control for robotic applications based on both biologically-inspired and artificial neural networks. The final goal is to bring together researchers from both robotics and neuroscience in order to explore how to maximize the progress at the multidisciplinary frontier evaluating the advantages of both tracks of the Neurorobotics research. TOPICS OF INTEREST - Bio-inspired sensory-motor coordination and adaptive control - Active perception - Neurocontrollers - Self-organization and sensory-motor mapping - Predictive behaviour - Bio-inspired learning robots - Robot imitation and learning by demonstration - Memory-based algorithms - Cognitive behaviours in robots - Reservoir computing - Deep learning - Neuromorphic computing for robotics KEYNOTE SPEAKERS Giorgio Metta (Italian Institute of Technology, Italy) - The use of motor invariants can improve action discrimination Tomohiro Shibata (Kyushu Institute of Technology, Japan) Functional Robotic Assistance of Human Motor Learning Ruediger Dillman (Research Center for Information Technology, Germany) - Modelling Cortical Sensor-Motor Control Functionalities with a Spiking Neural-Robot Control Simulator Sunil L. Kukreja (National University of Singapore, Singapore) Integration of Neuromorphic Tactile Perception with Haptic Feedback in a Virtual and Augmented Reality World for Advanced Robotic Control Best Regards, Egidio Falotico, Cecilia Laschi (The BioRobotics Institite,Scuola Superiore SantAnna , Italy) Florian Röhrbein, Florian Walter (Technical University of Munich, Germany) Organizers

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PhD position in Slovakia and US
by Norbert Kopco April 7, 2016

April 7, 2016

A PhD position is available in Norbert Kopco's Perception and Cognition Lab at Safarik University in Kosice, Slovakia, for a Marie Curie EU-funded project on adaptation and learning in spatial hearing (http://pcl.upjs.sk/grants/alt/) This is an international collaborative project, combining psychophysical, neuroimaging and computational methods. As part of this project, the student would be expected to work on development of modules for an auditory training tame (so, some programing skills are important), and spend up to 12 months in the US, either in Aaron Seitz's Brain Game Center at UC Riverside and/or Erick Gallun's lab at the Portland VA / OHSU (or, possibly with the other members of the consortium). Interested candidates please contact norbert.kopco(a)upjs.sk with a CV and a research statement. Information about PhD student application procedures is available at <http://www.upjs.sk/en/faculty-of-science/foreign-students/>http://www.upjs.sk/en/faculty-of-science/foreign-students/ . -- doc. Norbert Kopco, Ph.D. Assoc Professor / Senior Researcher: Inst of Computer Sci, Faculty of Science, Safarik Univ, Kosice, Slovakia Adjunct: Ctr for Computational Neurosci (CompNet), Boston University & Martinos Ctr for Biomed Imaging, Harvard Med School - Mass Gen Hospital P: +16175759556 F: +14847279884, kopco(a)bu.edu, http://cns.bu.edu/~kopco

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postdoctoral position in cognitive and affective neuroscience
by Steven Greening April 6, 2016

April 6, 2016

Applications are invited for a full-time postdoctoral research fellowship in the laboratory of Dr. Steven Greening on projects investigating the neural bases of emotion-cognition interactions. This position involves developing, running, and analyzing data on projects from healthy and mentally ill individuals, and presenting findings in peer-reviewed manuscripts and at conferences in collaboration with Dr. Greening. The research combines behavior and physiology with a multimodal MRI approach, FMRI and DTI, using univariate and multivariate analyses. This is a full-time one-year position with the possibility to renew for a second year. Apply online and view a more detailed ad at: www.lsusystemcareers.lsu.edu. Position #039259

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