- Comp-neuro - lists.cnsorg.org

[comp-neuro] PhD position(s) in Deep Learning for VR avatars in sport training and motor rehabilitation
by Dr Cristian Axenie Feb. 12, 2019

Feb. 12, 2019

Dear colleagues, We are now accepting applications for passionate students willing to pursue an interdisciplinary PhD within the newly established AUDI Konfuzius-Institut Ingolstadt Lab, a joint technology and research initiative supported by Audi, Technical University of Applied Sciences Ingolstadt and the City of Ingolstadt, Germany. https://audi-konfuzius-institut-ingolstadt.de/forschung/akii-microlab/micro… Our focus is to explore the application of AI, ML, and especially Deep Learning techniques, to leverage Virtual Reality avatar reconstruction for applications ranging from performance sports training to motor rehabilitation. If you have interest in cutting edge research at the border of AI, Machine Learning, Computer Graphics and VR then let us know. To get a feeling of the type of research we're conducting check VIRTOOAIR: https://audi-konfuzius-institut-ingolstadt.de/23132/neural-network-predicti… We seek highly motivated candidates with strong programming skills, analytical skills and creativity. A degree in electrical engineering or computer science (or equivalent) with focus on AI and ML is a must. Knowledge and expertise in VR and computer graphics are a plus. For applying, please send your CV and motivation letter to cristian.axenie(a)audi-konfuzius-institut-ingolstadt.de Thank you! --- Dr. Cristian Axenie Head of AKII Microlab PI in Artificial Intelligence and Machine Learning +49 171 105 4217 cristian.axenie(a)audi-konfuzius-institut-ingolstadt.de Esplanade 10, D-85049 Ingolstadt Germany

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Call for Participation: 100th Meeting of the Pacific Division of AAAS in Ashland Oregon June 18-22, 2019
by James Bower Feb. 11, 2019

Feb. 11, 2019

Hello all, Back in the business of meeting organization :-). - I would like to specifically draw your attention to the request for presentations related to: “the expanding role of computational modeling in basic science”. As you can see, this is a highly interdisciplinary meeting providing participants the opportunity to explore issues of science, public policy, culture and even art very broadly. Participation is not limited to those in the western United States, but Ashland is easy to get to from the major west coast cities, and I would love to have representation from the comp neuroscience community. The meeting is especially tailored to student participation, graduate and undergraduate. Very best regards and I hope to see some of you in Ashland this June. Jim Bower > > >> >> <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebba9fd5941f10303b3e64b3…> >> 100th Annual Meeting >> Southern Oregon University >> Ashland, Oregon >> June 18 - 21, 2019 >> associations.sou.edu/aaaspd <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebb35fa3307c2365cfd32592…> >> The 2019 meeting of the Pacific Division of AAAS <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebb35fa3307c2365cfd32592…> will be held on the campus of Southern Oregon University, <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebbe1ca7c601a6cf6a3cc111…> Ashland, Oregon, 18 – 21 June 2019. We are pleased to announce that the Northwest and Southwest Regions of Sigma Xi, the Scientific Research Honor Society, will once again join us for this meeting. Membership in AAAS or its affiliated societies is not required to participate in or present research at this meeting. >> Ashland, Oregon <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebb88fe51311f2b98d869641…> and the Rogue River Valley <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebb67c13f065e227a295101a…> are unique locations in Southern Oregon with wonderful opportunities to enjoy the natural world, including world famous Crater Lake <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebb872145c62caa032d99fb8…>, as well as unique cultural opportunities, like the Oregon Shakespeare Festival <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebbf94bd114130bbd88997a4…>, and many gastronomic <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebbc35c26eda0f7b3db07e81…> and horticultural riches <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebb7407ac3a3fc031eb695ea…>. A wonderful place to bring your family. >> All scientists, including graduate and undergraduate students, citizen scientists, college and university faculty and staff, and industry scientists, are invited to present their research results at the meeting, either orally or as posters. Persons paying the registration fee may attend all scientific sessions as well as participate in many other activities. Field trips require advance registration and payment of additional fees. >> In This Issue >> • Special Meeting Themes <x-msg://10/#A> >> • Common Topics for the Local Community <x-msg://10/#B> >> • What are Your Key Words? <x-msg://10/#C> >> • How Does Your Submission Connect to Science? <x-msg://10/#D> >> • Join Us for a Full Schedule of Activities <x-msg://10/#E> >> • Questions? <x-msg://10/#F> >> >> <>Special Meeting Themes <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebb34c90afb66c66a8ef9ab3…> >> While as always, the meeting is happy to accept symposium presentations and contributed oral and poster presentation in any of the broad science disciplines indicated below, this year we have also identified several themes around which we will organize part of the meeting. If your symposium, workshop, or contributed oral or poster presentation is relevant to one (or more) of these themes, please include the theme(s) in your list of key words. >> <>Common Topics for the Local Commmunity <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebbc05720a2757a81874bb66…> >> Working with local community leaders we have identified several topics of particular interest to the local community. >> • Climate change >> • Causes and impacts of forest fires >> • Societal and economic implications of AI, machine learning, and robotics >> • The opioid epidemic >> • Local Oregon environmental issues including the proposed Coos Bay pipeline and efforts to remove dams from the Klamath River >> • Diversification of local agriculture >> • The biology of aging >> • The science of wine >> • Impact and issues concerning pollinators >> <>What Are the Key Words of Your Symposium, Workshop, or Research? <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebbffc8fa54ab934d6d2d19a…> >> Please also indicate in the key words if your symposium, workshop or contributed research relates to the following issues in science and technology: >> • The future of scientific publishing >> • The future of higher education >> • The expanding role of computational modeling in basic science >> • New approaches to STEM education: k-12 >> • The importance of interdisciplinary approaches in science and technology >> • Engaging the public in science >> • Fostering inclusion of underrepresented minorities in science >> <>How Does Your Submission Connect to Science? <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebb72cd3152f7a079a21c46b…> >> Finally, this year’s meeting is also making an explicit effort to link and collaborate with regional cultural organizations and assets. Accordingly, please indicate in your key words if your submission is potentially relevant to linkage between science and: >> • Theater >> • Film >> • Art >> • Music >> <>Plan to join us for a full schedule of activities >> • Contributed oral and poster paper sessions (submission deadline April 18) >> • CALL for ABSTRACTS for CONTRIBUTED PAPERS and POSTERS <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebb4b72807b94dd5d8ea46b8…> >> >> • Symposia (submission deadline April 1) >> • CALL for SYMPOSIA <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebbd65caabe6518329fc44c0…> >> >> • Workshops (submission deadline April 1) >> • CALL for WORKSHOPS <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebbd65caabe6518329fc44c0…> >> >> • Field trips >> • In keeping with a long tradition for this meeting, a wide range of field trips will be offered to meeting participants and their families. Discount prices will also be arranged for a number of outdoor adventures. >> >> • Hands on science banquet <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebbcaead0944f9292f084718…> >> • Networking opportunities >> • And much more! >> >> <>Questions? >> Contact James Bower, Executive Director of the Pacific Division, by email at bowerj(a)sou.edu. <mailto:bowerj@sou.edu> >> >> <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebb82f599d2fab795415c065…> Manage Your Email Subscription Preferences | Unsubscribe <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebb97019d52e669189dd00e2…> | Privacy Policy <http://click.aaas.sciencepubs.org/?qs=166c48b32e4d9ebb98682473fd7b8b0c5125d…> | Forward to a friend <http://view.aaas.sciencepubs.org/ftaf.aspx?qs=4d099bbbcb6bad6b70eebec04f0af…> >> This email was sent on behalf of Special Announcements from AAAS/Science to: BOWERJ(a)SOU.EDU <mailto:BOWERJ@SOU.EDU> >> >> AAAS/Science | 1200 New York Avenue NW | Washington, DC 20005 | USA >> +1-202-326-6730 | 866-265-4152 (toll-free in the USA) >> >> Copyright © 2019 American Association for the Advancement of Science >> >

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Prometheus: Cloud Computing Portal for Computational Optogenetics
by Nikolic, Konstantin Feb. 11, 2019

Feb. 11, 2019

We would like to announce the availability of "Prometheus: Cloud Computing Portal for Computational Optogenetics". This is a web-based portal for PyRhO - a set of tools with a GUI for modelling and simulating opsins in neurons, using Python, Neuron or Brian 2. The main attraction is that all necessary modules and dependencies are already installed and configured (including the Python programming language, commonly used scientific Python libraries, NEURON and Brian2 simulation platforms) and the GUI comes with some pre-loaded values. So the platform can be used immediately. Absolutely no installation or set-up is required, just a web-browser, since the portal is using IPython/Jupyter<https://jupyter.org/> notebook. The portal is available here: http://try.projectpyrho.org/ To simplify things, there is no registration wall at the moment. But please note that the resources we are currently renting from a cloud computing service provider are limited. So please be patient - sometimes it might take more time to execute your job, depending on the number of users running their codes at the same time. A paper describing the platform, including several demonstrations, has been published: Evans et.al: "PyRhO: A Multiscale Optogenetics Simulation Platform", Frontiers in Neuroinformatics (2016): https://www.frontiersin.org/articles/10.3389/fninf.2016.00008/full Best regards, Dr Benjamin Evans, Bristol University, UK Dr Konstantin Nikolic, Imperial College London, UK

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MBL Methods in Computational Neuroscience Course
by Stephen A. Baccus Feb. 9, 2019

Feb. 9, 2019

Applications are open for the Methods in Computational Neuroscience course at the Marine Biology Laboratory in Woods Hole, MA. The course will run from July 29 to August 23, 2019, and the online application form can be found at: https://ws2.mbl.edu/studentapp/studentapp.asp?courseid=MCN The course application deadline is *March 19*. The course covers a range of topics in computational neuroscience including neuronal biophysics, neural coding & information processing, circuit dynamics, learning & memory, motor control, and cognitive processing & disease. In addition, numerous tutorials and problem sets will cover a broad range of computational and mathematical modeling methods. The course strongly emphasizes the collaboration between theory and experiment in solving neuroscience problems, and lectures will be given by a mixture of theorists and experimentalists. The final weeks of the course are primarily reserved for work on projects that students design in collaboration with the resident faculty. Further information can be found on the MCN website: http://www.mbl.edu/mcn/ 2019 Course Directors: Stephen Baccus, Stanford University Xiao-Jing Wang, New York University 2019 Confirmed Faculty: Larry Abbott, Columbia University Emery Brown, MIT Dmitri Chklovskii, Simons Institute Anne Collins, UC Berkeley Shaul Druckmann, Stanford University Uri Eden, Boston University Bard Ermentrout, U. of Pittsburgh Adrienne Fairhall, U. of Washington Ila Fiete, University of Texas Austin James Fitzgerald, Janelia Res., HHMI Loren Frank, UCSF Michale Fee, MIT Stefano Fusi, Columbia University Surya Ganguli, Stanford University Mark Goldman, UC Davis Kenneth Harris, U. College London James Haxby, Dartmouth University Nancy Kopell, Boston University Eve Marder, Brandeis University Bartlett Mel, Univ. of Southern California Jonathan Pillow, Princeton University David Redish, U. Minnesota Terry Sejnowski, Salk Institute Mike Shadlen, Columbia U. Reza Shadmehr, Johns Hopkins Univ. Sara Solla, Northwestern University Haim Sompolinsky, Hebrew University Klaas Stephan, Univ. of Zurich Josh Tenenbaum, MIT Nao Uchida, Harvard University Greg Wayne, DeepMind Hongkui Zeng, Allen Institute

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Postdoctoral Fellow in Multimodal Brain Imaging of Neurodegeneration
by Yasser Iturria Medina Feb. 9, 2019

Feb. 9, 2019

*Postdoctoral Fellow in Multimodal Brain Imaging of Amyotrophic Lateral Sclerosis (ALS)* We are looking for a highly motivated postdoctoral student, for joining the *Neuroinformatics for Personalized Medicine* lab (NeuroPM) at the Montreal Neurological Institute (McGill University, Montreal, Canada). The postdoc will be under the supervision of Professors Yasser Iturria-Medina (McGill University) and Sanjay Kalra (University of Alberta), and will be expected to collaborate with multiple associated groups. The project, for one year and potentially extendable for another year, includes the analysis of direct multifactorial brain interactions and intra-brain network spreading of aberrant effects in Amyotrophic Lateral Sclerosis. The NeuroPM lab (*http://www.neuropm-lab.com/ <http://www.neuropm-lab.com/>*) is affiliated with the Healthy brain for Healthy Lives (HBHL) initiative (*https://www.mcgill.ca/hbhl/ <https://www.mcgill.ca/hbhl/>*), the Ludmer Center (*http://ludmercentre.ca/ <http://ludmercentre.ca/>*), and the McConnell Brain Imaging Center ( https://www.mcgill.ca/bic/) involving computationally intensive and interdisciplinary research on the brain. The MNI is an internationally renowned institution, characterized by the integration of research and patient care. The Kalra Lab (http://www.ualberta.ca/ALS/research/) has the mission of improving our understanding of ALS biology through brain imaging and translational research. It is the central coordinating site for the Canadian ALS Neuroimaging Consortium (CALSNIC), a multicenter research platform for the collection of harmonized imaging and behavioural data. Interested candidates should have a background in brain imaging and Matlab. Experience in neurodegeneration and brain computational analysis will be an asset. Interested persons should send their CV, a cover letter stating research interests, and two reference letters. The competition will remain open until the position is filled. *Contact*: Yasser Iturria Medina, Email: iturria.medina(a)gmail.com -- Yasser Iturria Medina, PhD. Montreal Neurological Institute, McGill University Montreal, Canada H3A 2B4, Phone # 514-398-1524 Lab: http://www.neuropm-lab.com/

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PhD positions - Learning in Spiking Neural Networks
by Robert Legenstein Feb. 8, 2019

Feb. 8, 2019

The Lab of Robert Legenstein at TU Graz is offering funded PhD positions in the areas Spiking Neural Networks/Machine Learning/Brain Models/Neuromorphic Hardware. A background in Machine Learning, Computer Science, or Mathematics is desirable, as well as evidence for excellent prior performance as a student. Successful candidates will work on learning algorithms for spiking neural networks in the interdisciplinary consortium of the EU-funded project SYNCH. We will develop in this project learning algorithms for spiking neural networks (unsupervised, supervised, and reward-based). Hardware experts will implement these algorithms in cooperation with our team in a spiking neural network chip. The chip will be applied to various tasks within a brain-silicon hybrid system such as the classification of recorded brain network states. (see https://www.tugraz.at/institute/igi/people/prof-legenstein/projects/ for a brief description). Please send your application including a CV, any prior thesis and/or work by February 28 to robert.legenstein(a)igi.tugraz.at Dr. Robert Legenstein Institute Head Institute for Theoretical Computer Science Graz University of Technology Inffeldgasse 16b/I, 8010 Graz, Austria http://www.igi.tugraz.at/legi/ Follow @CompLegenstein on Twitter. ++43/316/873-5824 ----------------------------------

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Postdoctoral position in network modeling
by Fidel Santamaria Feb. 8, 2019

Feb. 8, 2019

Postdoctoral position in network modeling An NIH-funded postdoctoral position is available in the lab of Charles Wilson at the Neurosciences Institute of the University of Texas at San Antonio, on the topic of oscillations and oscillatory coupling in the basal ganglia. The successful applicant will join a team of experimentalists to create a large scale accurate model of the basal ganglia, with a focus on activity pattern formation by oscillating neurons in the globus pallidus, subthalamic nucleus and substantia nigra. Applicants should have an interest in the function of the basal ganglia and experience making and using models of neurons and networks. Experience with intracellular recoding is beneficial, but not required. For information about the lab see: https://marlin.life.utsa.edu/ For information about the UTSA Neurosciences Institute see: https://neuroscience.utsa.edu/ To apply please send your CV, a letter describing your experimental interests and contact information for two potential references to Charles Wilson (charles.wilson(a)utsa.edu<mailto:charles.wilson@utsa.edu>).

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Post-doc position neuropysiology of hearing impairment and machine learning
by Jochem Rieger Feb. 8, 2019

Feb. 8, 2019

Dear list, The DFG-funded cluster of Excellence "Hearing 4 All" has an open post-doctoral position in project "Characterizing central neural speech processing in normal and hearing impaired listeners using machine learning". The aim of the project is to combine neurophysiological measurements (fMRI and/or MEG/EEG) with data driven machine learning to characterize cortical consequences of hearing loss. We offer an international and interdisciplinary research environment and access to up-to-date research facilities. The position is available from April 1st, 2019 until October 31st, 2022. Salary level German TV-L E13, full time. The payment includes an experience dependent component. Application deadline is February 27th 2019 The full job announcement can be found here: https://uol.de/stellen/?stelle=66447 Please forward this message to people who might be interested Regards, Jochem -- Prof. Dr. rer. nat. Jochem Rieger Head of Applied Neurocognitive Psychology Head of Neuroimaging Unit Faculty VI Carl-von-Ossietzky University 26111 Oldenburg Germany Phone: +49(0)4417984533 Fax: +49(0)4417983865

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Brainhack Warsaw (March 1–3, 2019, Poland)
by Daniel Borek Feb. 8, 2019

Feb. 8, 2019

Brainhack Warsaw 2019 March 1-3, 2019 University of Warsaw, Warsaw, Poland — REGULAR -> 04.02 - 17.02 -> 120 PLN (ABOUT €29) — — LATE -> 18.02 - 24.02 -> 135 PLN (ABOUT €33) — On the weekend of March 1-3, 2019, the second edition of Brainhack Warsaw will take place. During this three-day event dedicated to students and PhD students, we will work in teams on neuroscience-related projects. The aim of the event is to meet new, enthusiastic researchers, make new friendships in academia, learn, share the knowledge on data mining and brain research, but also promote open science in the spirit of the whole Brainhack community (Craddock et al., 2016) <https://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0121-x>. Attendees of various backgrounds are welcome to join! Below you could see a list of projects which will be realised during our three-day event: - Generating fake MRI to enhance Alzheimer’s disease prediction <https://brainhackwarsaw.github.io/index.html#project2> - Network analysis of the electrical activity of the brain during epileptic seizures <https://brainhackwarsaw.github.io/index.html#project3> - Deep Frankenstein: dissecting and sewing artificial neural networks <https://brainhackwarsaw.github.io/index.html#project4> - Tackling the ABCD Neurocognitive Prediction Challenge <https://brainhackwarsaw.github.io/index.html#project5> - Multidimensionality problem in passive BCI for game control <https://brainhackwarsaw.github.io/index.html#project6> - Cross-Recurrence Quantification Analysis (cRQA) as a new measure of functional connectivity <https://brainhackwarsaw.github.io/index.html#project7> - EMG-based desktop controlling <https://brainhackwarsaw.github.io/index.html#project8> - Mapping the state of modern psychology through the public online activity of scientists <https://brainhackwarsaw.github.io/index.html#project9> ‘Regular’ and ‘Late’ registration for project participants close subsequently on 17.02 and 24.02.2019. A registration fee will be requested after registration. The registration fee will be spent on catering during the event. To register please visit our page and learn more about the Brainhack Warsaw! https://brainhackwarsaw.github.io/ We looking forward to seeing you in Warsaw! On behalf of the Brainhack Warsaw 2019 team

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Computational & Cognitive Neuroscience Summer School 2019
by Christopher Honey Feb. 8, 2019

Feb. 8, 2019

We are pleased to announce the 9th Computational and Cognitive Neuroscience (CCN) Summer School which will take place June 29 - July 21, 2019 in Suzhou, China. Designed to emphasize higher cognitive functions and their underlying neural circuit mechanisms, the course aims at training talented and highly motivated students and postdoctoral fellows from Asia and around the world. We welcome both applicants with quantitative backgrounds (including Physics, Mathematics, Engineering and Computer Science) and those with experimental backgrounds. The lectures will introduce the basic concepts and methods, as well as cutting-edge research on higher brain functions such as decision-making, attention, learning and memory. Modeling will be taught at multiple levels, ranging from single neuron computation and microcircuits up to large-scale systems and machine-learning approaches. Python-based programming labs coordinated with the lectures will provide practical training in important computational methods. Course information and application instructions are available on the CCN Summer School website: www.ccnss.org Applications are being accepted through the Cold Spring Harbor Asia website: http://www.csh-asia.org/summerschool_SCOSYNEinstruct.html The application deadline is March 8, 2019. Faculty: Carlos Brody (Princeton) Bob Desimone (MIT) Bard Ermentrout (Pitt) Winrich Freiwald (Rockefeller) Biyu He (NYU) Sukbin Lim (NYU) John Murray (Yale) Jascha Sohl-Dickstein (Google Brain) Jon Winawer (NYU) Byron Yu (CMU) Organizers: Dora Angelaki (NYU) Xiao-Jing Wang (NYU) Christopher Honey (Johns Hopkins) Robert Guangyu Yang (Columbia) Feel free to direct any questions to Chris Honey ( chris.honey(a)jhu.edu ) and Robert Guangyu Yang ( robert.yang(a)columbia.edu ).

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