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PhD Studentship in Improving medication verification for cancer patients
by Shangming Zhou 20 Jun '21

20 Jun '21

Dear All, *PhD Studentship in Improving medication verification for cancer patients: An AI driven population health study* Applications are invited for a three-year PhD studentship. The studentship will start on* 1 October, 2021, *or as soon as possible after that. *Overview of the Studentship* This fully funded PhD studentship is based at the University of Plymouth’s Centre for Health Technology <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.plymo…>, a leading international research group focused on the design, development and implementation of health technology innovations in health and care. This vibrant team of researchers work within the intersection of digital health, software engineering, data science, clinical artificial intelligence, and innovation strategy, with a primary aim to create a global hub for technology incubation in the South West of the United Kingdom. *Project Description* Medication errors, including those in prescribing, dispensing, or administration of a drug, are the single most preventable cause of patient harm. They have a significant impact on the efficiency of the workflow in pharmacy, raise safety concerns for patients, and result in a financial burden on the healthcare systems. Within cancer treatment, emphasis on reducing the number of medication errors has been an active research area for many years, with understanding that interdisciplinary approaches are vital to assure continuous improvement. Opportunities created by the reduction of transaction times for complex computational processes and use of machine learning to support clinical decision making, create a potential catalyst for the development of tools for reduction in medication errors. This PhD studentship offers an exciting opportunity of exploring AI and machine learning with large clinical data sets residing within electronic health records to create methods to assure the effective use of systemic anticancer treatment (including traditional cytotoxic chemotherapy, immunotherapy, novel oral therapies etc.) without compromising patient safety. The studentship will require application of interdisciplinary skills to enable cooperation between the research, clinical, industry and patient communities in the development of a novel approach which could enhance clinical outcomes. *Supervision Team* - Professor Shang-Ming Zhou <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.plymo…> (shangming.zhou(a)plymouth.ac.uk) https://scholar.google.com/citations?user=iWiXGWMAAAAJ&hl <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fscholar.g…> - Dr Edward Meinert (edward.meinert(a)plymouth.ac.uk) https://scholar.google.com/citations?hl=en&user=7V-WsrwAAAAJ <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fscholar.g…> - Mrs Andrea Preston (Andrea.Preston(a)uhbw.nhs.uk) This PhD student will be academically advised by Professor Shang-Ming Zhou and Dr Edward Meinert, research scientists with research interests in applied artificial intelligence and machine learning, computing science in health and care. The student will also be advised by Mrs Andrea Preston, a Macmillan Divisional Lead Haematology & SW Cancer Commissioning Pharmacist. This supervision team will assure the execution of a world-class PhD embedded into the wider digital health ecosystem at the University of Plymouth. *Eligibility* · This PhD studentship is offered for UK and international applicants. · Applicants should have: 1) A first or upper second-class honours degree, and a relevant Master’s qualification in Computing Science, Data Science, Statistics, Health Informatics, Medical Informatics, Bioinformatics, or any areas related; 2) Interest in working with real-world problems and large data sets; 3) Excellent proficiency in English and outstanding communication skills; 4) Strong analytical and programming skills; 5) A “can do”, positive attitude with an aspiration to change the world. · Experience in machine learning is advantageous. · Experience in publication of peer-reviewed literature is desirable. *International Students* International applicants should meet the English language requirements, please see the details from the University’s website https://www.plymouth.ac.uk/international/how-to-apply/english-language-requ… <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.plymo…>. IELTS Academic 6.5 or above (or equivalent) with 5.5 in each individual category is commonly required by the University’s Doctoral College. *How to Apply* *To apply for this position,* please visit: https://www.plymouth.ac.uk/student-life/your-studies/research-degrees/postg… <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.plymo…>. *Please clearly state the name of the studentship that you are applying for on your Personal Statement.* A research proposal is required. Please see: https://www.plymouth.ac.uk/student-life/your-studies/research-degrees/appli… <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.plymo…> for a list of supporting documents to upload with your application. *Enquiry * If you wish to discuss this project further informally, please contact Professor Shang-Ming Zhou (shangming.zhou(a)plymouth.ac.uk) Dr Edward Meinert (edward.meinert(a)plymouth.ac.uk) or Mrs Andrea Preston ( Andrea.Preston(a)uhbw.nhs.uk) For more information on the admissions process, please contact doctoralcollege(a)plymouth.ac.uk. *Closing Date* *The closing date for applications is 30 July 2021. *Shortlisted candidates will be invited for interview. Best wishes Shangming Zhou _______________________________________________________ Shang-Ming Zhou Professor in e-Health, Fellow of the Higher Education Academy, Centre for Health Technology, Faculty of Health, University of Plymouth, Plymouth, PL4 8AA, UK Tel: +44 (0)1752 586513 Email: shangming.zhou(a)plymouth.ac.uk ; smzhou(a)ieee.org https://www.plymouth.ac.uk/staff/shang-ming-zhou <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.plymo…> https://www.hdruk.ac.uk/people/dr-shang-ming-zhou <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.hdruk…> https://www.plymouth.ac.uk/research/centre-for-health-technology <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.plymo…>

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BrainCosmos Summer School on Neural Circuit Complexity from Aug 30-Sep 3
by Shyam Diwakar 19 Jun '21

19 Jun '21

Dear Fellow Neuroscientists and Students, We would like to welcome you to a BrainCosmos Summer School titled "Neural circuit complexity: Neuroscience, Models and Robotics - Where do they lead?" organized at Lake Como, Italy from August 30-September 3, 2021. For more info: https://brco.lakecomoschool.org/ <https://brco.lakecomoschool.org/> The BrainCosmos summer school focuses on the study of the brain, neuroscience of circuits and behavior in micro and macro scales, models, experiments, alongside topics of robotics and artificial intelligence and a perspective on brain diseases. The school primarily targets PhD students across all research disciplines, but applications from professionals, masters students and post-doctoral researchers are welcome as well. The School will also cater to early career researchers in Neuroscience and will aim to promote critical thinking within the field and beyond. The scope covers a very wide range of topics that we believe to be of interest to many fields related to neuroscience, modeling, robotics and artificial intelligence. PARTICIPATION: The school will run in parallel with two simultaneous batches, one in presence (20 participants) and another remotely (20 participants). The lectures will be streamed. APPLY: https://brco.lakecomoschool.org/application/ FEES: There are some nominal fees for participation. In presence attendance: € 120, 22% VAT included (including lunches, coffee breaks, and all lectures and school materials). Online attendance: €100, 22% VAT included (including the possibility to participate remotely to all the lectures given during the school and to the related initiatives, and to have access to the recordings of the lessons from the school portal for a period of three months after the end of the school. KEY DATES Application deadline: July 20 Acceptance notification: July 23 Registration (only accepted students): August 3 Confirmed FACULTY list: Anna Letizia Allegra Mascaro - LENS, Florence, Italy Alberto Antonietti - EPFL, Swiss Silvia Casarotto – University of Milan, Italy Claudia Casellato - University of Pavia, Italy Marco Dal Maschio – University of Padoa, Italy Egidio D'Angelo - University of Pavia, Italy Damien Depannemaecker - CNRS, Paris, France Shyam Diwakar - Amrita Mind Brain Center, Amrita University, India Kenji Doya – Okinawa Institute of Science and Technology Graduate University, Japan Claudia Gandini Wheeler-Kingshott - University College London, UK & University of Pavia, Italy Alice Geminiani - University of Pavia, Italy Michele Giugliano – SISSA, Trieste, Italy Alberto Mazzoni - Scuola Superiore Sant’Anna Pisa, Italy Michele Migliore - CNR Palermo, Italy Fulvia Palesi – BCC Pavia, Italy Alessandra Laura Giulia Pedrocchi - Politecnico Milano, Italy Michele Piana - University of Genoa, Italy Isabella Pozzi - CWI, Amsterdam Holland Simone Sarasso – University of Milan, Italy The School DIRECTORS: Giovanni Naldi - University of Milan, Department of Environmental Science and Policy, Italy. giovanni.naldi(a)unimi.it<mailto:giovanni.naldi@unimi.it> Thierry Nieus - University of Milan, Italy. thierry.nieus(a)unimi.it<mailto:thierry.nieus@unimi.it> Simone Sarasso - University of Milan, Department of Biomedical and Clinical Sciences “Luigi Sacco”, Italy. simone.sarasso(a)unimi.it<mailto:simone.sarasso@unimi.it> Shyam Diwakar - Amrita Mind Brain Center, Amrita University, India. shyam(a)amrita.edu<mailto:shyam@amrita.edu> Please feel free to circulate! With best wishes, -- Prof. Shyam Diwakar, Ph.D. Director - Amrita Mind Brain Center Faculty Fellow - Amrita Center for International Programs Amrita Vishwa Vidyapeetham (Amrita University) Amritapuri, Clappana P.O. Kollam, India. Pin: 690525 Ph:+91-476-2803116 Fax:+91-476-2899722 http://amrita.edu/mindbrain [https://docs.google.com/uc?export=download&id=1_nOxaCXob6wVcuQyYI5KVk1PhMgi…] [https://intranet.cb.amrita.edu/sig/RankingLogo.png] Disclaimer : The information transmitted in this email, including attachments, is intended only for the person(s) or entity to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon this information by persons or entities other than the intended recipient is prohibited. Any views expressed in any message are those of the individual sender and may not necessarily reflect the views of Amrita Vishwa Vidyapeetham. If you received this in error, please contact the sender and destroy any copies of this information.

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Job: Editor with Nature Machine Intelligence (9 month locum position - London, NY, Berlin)
by Yann Sweeney 18 Jun '21

18 Jun '21

Dear all, Nature Machine Intelligence are looking to recruit a locum editor. We are a new Nature Research journal that launched in 2019. It publishes both fundamental and applied research in a wide range of areas in artificial intelligence and robotics. The journal incorporates elements of computer science, electrical engineering, mathematics, physics, neuroscience, cognitive science and psychology. The journal also publishes news, commentary and perspectives on the impact of machine intelligence on science and society. We are inviting applications from those with a background in any of the above and related fields. Applicants should have completed a PhD, have a strong research record, feel driven to continually learn about new fields and trends and have a keen interest in exploring the wide implications of research on other scientific areas, industry and society. We would be interested in hearing from candidates who can demonstrate strong science writing skills. Editorial experience is not required, although applicants with significant editorial experience are encouraged to apply and will potentially be considered for a Senior Editor position. The successful candidate will report to the Chief Editor. They will participate in all aspects of the editorial process, including manuscript selection, commissioning and editing News and Views, Comments, Perspectives and Reviews, as well as writing for the journal. The successful candidate must be dynamic and outgoing, and have excellent communication and interpersonal skills. A key aspect of the job is liaising with the research community through laboratory visits and international conferences, and therefore a willingness to travel is essential. The position is offered on a full-time basis, for an initial fixed term of 9 months, and will ideally be located in our London, Berlin or New York office. The starting date is envisaged as soon as possible within the next few weeks. Full advert here, apply by 22 June: https://career5.successfactors.eu/sfcareer/jobreqcareer?jobId=33925&company… Feel free to email with informal inquiries. All the best, Yann Senior Editor Nature Machine Intelligence yann.sweeney(a)nature.com

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Postdoc opportunity at Stanford Cognitive and Systems Neuroscience Laboratory
by Mai-Phuong K Bo 18 Jun '21

18 Jun '21

The Stanford Cognitive and Systems Neuroscience Laboratory (scsnl.stanford.edu<https://med.stanford.edu/scsnl.html>) invites applications for post-doctoral positions with expertise in cognitive, systems and computational neuroscience. Candidates must have a PhD and research experience in cognitive neuroscience, psychology, cognitive science, computer science, electrical/biomedical engineering, or related fields. The successful candidate will develop a vigorous research program that contributes to, and complements, ongoing research studies of human brain function and psychopathology. The candidate will have access to multiple large datasets and state-of-the-art computational resources, including HPCs and GPUs. We are especially interested in talented and highly motivated individuals with expertise in at least one of these areas: cognitive neuroscience; computational psychiatry; cognitive modeling of behavioral dynamics; computational and statistical analysis of brain imaging and electrophysiological data, including dynamic brain circuit analysis, statistical modeling and Bayesian inference, machine learning, and deep neural networks. Please email your CV and a statement of research interests, explaining how your skills and past experience will advance human neuroscience research, to Prof. Menon at scsnl.stanford+postdoc(a)gmail.com<mailto:scsnl.stanford+postdoc@gmail.com>. Mai-Phuong Bo (She/Her) Lab & Recruitment Manager Stanford Cognitive & Systems Neuroscience Lab Department of Psychiatry & Behavioral Sciences Email: maipbo(a)stanford.edu [cid:461d2e43-3a74-4692-8e70-e709a54c2c86]

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Postdoc position at Inria Sophia Antipolis
by Etienne Tanré 17 Jun '21

17 Jun '21

Dear colleagues, Apologies for Cross-Posting, This is an announcement for a 24 months post-doctoral position at Inria Sophia Antipolis on the theme ``Heterogeneity in interacting neural networks'’. The candidate will be supervised by E. Tanré, R. Veltz and O.Faugeras. This project is part of the Human Brain Project HBP SGA3. More information is available on : https://jobs.inria.fr/public/classic/en/offres/2021-03818 <https://jobs.inria.fr/public/classic/en/offres/2021-03818> Please note that you must apply for the position using the link above. Can you please forward this announcement to your interested contacts? Thank you, Best regards, E. Tanré, R. Veltz and O. Faugeras.

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Opening: Postdoctoral Researcher in Computational Neuroscience to study network dynamics, brain function, and psychedelics
by Joern Davidsen 16 Jun '21

16 Jun '21

Dear all: We are recruiting a talented postdoctoral researcher to participate in a cutting-edge International Network for Brain-Inspired Computation<https://www.nsf.gov/awardsearch/showAward?AWD_ID=2019976&HistoricalAwards=f…> that includes nodes in Montreal, Paris, and the Pacific Northwest of the US and Canada (e.g. University of Washington, Allen Brain Institute). The project is at the intersection of mathematics, physics, and neuroscience in the general area of complex network dynamics and emergent activity patterns and representations that drive biological computation. The specific objective is to understand cognitive brain function and the effects of psychedelics by analyzing large-scale ensemble neural data collected in our labs, in conjunction with computational and/or analytical work to identify key mathematical principles and develop theories of core function. The ideal candidate will have a quantitative background (e.g. PhD in mathematics, physics, computer science) along with experience in applying this background to neuroscience. This postdoctoral position is partially funded by the Pacific Institute for Mathematical Sciences<https://www.pims.math.ca/> and is aimed to strengthen the link between the Campus Alberta computational neuroscience community at the University of Calgary (Complexity Science Group<https://www.ucalgary.ca/complexity/>, Hotchkiss Brain Institute<https://hbi.ucalgary.ca/>) and the University of Lethbridge (Canadian Center for Behavioural Neuroscience<https://www.uleth.ca/artsci/neuroscience/about>) with the other network members including the Computational Neuroscience Center<https://cneuro-web01.s.uw.edu/> at the University of Washington. The position is open immediately with primary locations in either Calgary or Lethbridge. The specific start date has to be within five years of being awarded a PhD degree. The position is funded for at least two years and includes an annual stipend in the range of CAD$42,000 – $50,000 plus benefits. Opportunities for brief residences in partner nodes (Montreal, Seattle, or Paris) are also available. Interested candidates should submit their application package including a cover letter, their CV with a list of publications, brief statement of research interests and their possible start dates in PDF format to Dr. Jörn Davidsen (davidsen(a)phas.ucalgary.ca<mailto:davidsen@phas.ucalgary.ca>) and Dr. Aaron Gruber (aaron.gruber(a)uleth.ca<mailto:aaron.gruber@uleth.ca>). Applicants should arrange for at least two letters of reference to be sent as well. Review of applications will begin July 31st, 2021, and continue until the position is filled. For additional information and informal inquiries, please contact Dr. Davidsen or Dr. Gruber. We strive for a diverse and inclusive environment, and encourage applications from members of any identity. --- Dr. Jörn Davidsen Professor of Physics & Humboldt Research Fellow University of Calgary www.ucalgary.ca/davidsen<http://www.ucalgary.ca/davidsen>

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PostDoc position in Neuroinformatics, Nijmegen, The Netherlands
by Rembrandt Bakker 16 Jun '21

16 Jun '21

(apologies for any cross-postings) The FLAG-ERA project NeuronsReunited is looking for a postdoctoral research associate (Neuroinformatics/Computational Neuroscience) for a 2 year position at 0.9 fte. Each mental event or voluntary motor act involves the coordinated activity of neurons in areas of the brain far apart. Thin, branched and extremely long cellular processes called axons provide the physical substrate of these interactions. Since a few years it is possible to fully trace these long- range axons one at a time. The goal of the FlagERA research project "NeuronsReunited" (https://www.flagera.eu/wp-content/uploads/2020/06/FLAG-ERA_JTC2019_HBP_Neur…) is to create tools for speeding up the conversion of experimental data into digital axons, and to precisely place neurons into a digital reference brain to reveal their context. The tools are applied to existing and new data in mouse, and the resulting insights are incorporated into new models for brain function. The project is a collaboration between five international partners, two experimental partners (Prof. Francisco Clasca, Madrid; Prof. Egidio d'Angelo, Pavia) and three computational/theoretical partners (Prof. Paul Tiesinga, Dr. Rembrandt Bakker, Nijmegen; Prof. Michele Giugliano, Trieste; Prof. Sacha Van Albada, Jülich). As a postdoctoral research associate you will design strategies to get axonal arbors precisely registered in a brain atlas. The brain atlas consists of high-resolution 3d dataset that represents the average mouse brain anatomy, while the neuron consists of a vector representation of its morphology that can be extended with images of selected tissue sections. Depending on your field of expertise, further steps can focus on automating the process to trace neurons from stained tissue sections or to integrate the resulting database of precisely registered neurons with other data modalities to generate new knowledge. You will be part of a team that deals with atlasing and data integration (Nijmegen) and model building (Jülich, Padova, Trieste). A key deliverable will be the creation of a gold standard online catalog of precisely placed neurons that future generations of neuroscientists can contribute to and compare data to. The tools make use of an existing body of work that consists of web-based applications: HBP Morphology Viewer (https://neuroinformatics.nl/HBP/morphology-viewer) Scalable Brain Atlas (https://scalablebrainatlas.incf.org/) and interactive notebooks (Python). Besides being a member of the project team, you will also be part of the European Human Brain Project and have access to the expertise of the large neuroscience community at the Donders Institute for Brain, Cognition and Behavior. We ask: • A PhD degree in a quantitative field (engineering, physics, computational neuroscience, etc). • Expertise in neuroscience or interest in acquiring it. • Excellent programming skills, preferably in JavaScript applications or Python-based pipelines. • Experience with neuroinformatics, visualization/3d-graphics, image processing, and/or machine learning. • Demonstrated ability to work in a multidisciplinary environment at the forefront of science. • Excellent communication skills in spoken and written English. We are: The Donders Institute for Brain, Cognition and Behaviour, home to more than 600 researchers from 35 countries, is a world-class research centre devoted to understanding the mechanistic underpinnings of human cognition and behaviour in health and disease. The institute's mission includes conducting excellent interdisciplinary research at the unique interface between genetic, molecular and cellular processes at one end and computational, system-level neuroscience with cognitive and behavioural analysis at the other end. Within this playing field, the Neuroinformatics department plays an essential role in developing new approaches for both computational modeling and data processing, all with the aim to turn raw data into highly valuable and well-integrated resources from which neuro-scientific insights can be extracted. Radboud University We want to get the best out of science, others and ourselves. Why? Because this is what the world around us desperately needs. Leading research and education make an indispensable contribution to a healthy, free world with equal opportunities for all. This is what unites the more than 22,000 students and 5,000 employees at Radboud University. And this requires even more talent, collaboration and lifelong learning. You have a part to play! We offer: • Employment: 0.9 FTE. • A maximum gross monthly salary of € 4,402 based on a 38-hour working week (salary scale 10). • The exact salary depends on the candidate's qualifications and amount of relevant professional experience. • In addition to the salary: an 8% holiday allowance and an 8.3% end-of-year bonus. • Duration of the contract: 25 months. • The intended start date is 1 September 2021. • You will be able to use our Dual Career and Family Care Services. Our Dual Career and Family Care Officer can assist you with family-related support, help your partner or spouse prepare for the local labour market, provide customized support in their search for employment and help your family settle in Nijmegen. • Have a look at our excellent employment conditions. They include a good work-life balance (among other things because of the excellent leave arrangements), opportunities for development and a great pension scheme. Apply directly Please use this link to apply: https://www.ru.nl/english/working-at/vacature/online-solliciteren/?tk=uk&re…. Address your application to Paul Tiesinga and submit it no later than 1 July 2021. Your application should include the following attachments: • Letter of motivation. • CV including contact details of two references. • Your research statement. The first round of interviews will take place on 6th July 2021. The second round of interviews will take place on 13th July 2021. For more information about this vacancy, please contact: Paul Tiesinga, Full Professor Tel.: +31 24 365 22 32 Email: p.tiesinga(a)science.ru.nl<mailto:p.tiesinga@science.ru.nl> Rembrandt Bakker, Postdoctoral Researcher Tel.: +31 24 365 26 33 Email: r.bakker(a)donders.ru.nl<mailto:r.bakker@donders.ru.nl> ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Dr. Astrid Lambrecht, Prof. Dr. Frauke Melchior ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

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Postdoctoral position - Pinto Lab @ Northwestern University
by Lucas Pinto 15 Jun '21

15 Jun '21

Dear colleagues, The Pinto Lab<http://www.pintolab.org> is seeking a postdoc who is excited about studying how neural circuits across many brain areas interact to support decision making, at the interface between experimental and computational neuroscience. In particular, the lab is interested in understanding the circuit mechanisms the control how these interactions are flexibly reconfigured when animals make decisions that use different underlying computations. To answer these questions, the candidate will use a combination high-throughput behavior in virtual reality, optical and genetic tools to measure and/or manipulate the dynamics of single neurons and neuronal populations, and computational approaches to understand both the behavior and its relationship to neural activity. We are a brand new lab that started in January 2021 at the Feinberg School of Medicine<https://www.feinberg.northwestern.edu/> at Northwestern University<http://www.northwestern.edu>, located in the heart of Chicago. Come join a vibrant neuroscience community<https://www.nuin.northwestern.edu/> in a world-class and highly livable city, working with a young PI committed to mentoring. Please visit our website<http://www.pintolab.org> for more details. Applicants should be nearing completion or already hold a PhD in neuroscience, biology, engineering, computer science, psychology or other related fields. Coding and/or experimental skills are preferred, but the applicant will have the opportunity to be trained in these techniques. We strongly encourage candidates from underrepresented groups to apply. Please send a CV, a one-page statement of research interests and skills, and contact information for 2-3 references to Lucas Pinto at lucas.pinto(a)northwestern.edu<mailto:lucas.pinto@northwestern.edu>. Best, Lucas - - - - - - - - - - - - - - - - - - - - - - - - - - - Lucas Pinto, M.D., Ph.D. Assistant Professor Department of Physiology Feinberg School of Medicine Northwestern University lucas.pinto(a)northwestern.edu<mailto:lucas.pinto@northwestern.edu> www.pintolab.org

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NEST Conference 2021 — Registration Deadline 21 June
by Hans Ekkehard Plesser 15 Jun '21

15 Jun '21

Dear all, Just a little reminder that the registration deadline for the NEST Conference 2021 is on Monday next week, June 21. More information on the programme and how to register can be found on the conference website https://nest-simulator.org/conference This year's conference will again take place as a virtual conference on Monday/Tuesday 28/29 June 2021 followed by a virtual NEST User Hackathon until Friday 2 July. The NEST Conference provides an opportunity for the NEST Community to meet, exchange success stories, swap advice, learn about current developments in and around NEST spiking network simulation and its application. We are looking forward to seeing you all! Hans Ekkehard Plesser & many more -- Prof. Dr. Hans Ekkehard Plesser Head, Department of Data Science Faculty of Science and Technology Norwegian University of Life Sciences PO Box 5003, 1432 Aas, Norway Phone +47 6723 1560 Email hans.ekkehard.plesser(a)nmbu.no<mailto:hans.ekkehard.plesser@nmbu.no> Home http://arken.nmbu.no/~plesser

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INCF/OCNS Software WG Dev session on SciUnit/NeuronUnit (June 21, 1600 UTC)
by Ankur Sinha 14 Jun '21

14 Jun '21

Dear all, Apologies for the cross posts. The INCF/OCNS Software WG[1] is happy to announce the next Dev Session where members of the developer teams of commonly used neuroscience software introduce their software and then discuss their *development* pipelines. ---- In the next Dev Session, Rick Gerkin will introduce the SciUnit framework and discuss its development: https://ocns.github.io/SoftwareWG/2021/06/04/dev-session-rick-gerkin-sciuni… The session will be held at June 21, 2021, 1600 UTC over Zoom: https://ucl.zoom.us/j/91246735902?pwd=WVdVK3I5SGdlaDFZdllDQ0w2djVBdz09 Click here to see the event in your local time: https://www.timeanddate.com/worldclock/fixedtime.html?msg=Dev+session%3A+Ri… SciUnit is a discipline-agnostic framework for model validation, handling all of the testing workflow by using a implementation-independent interface to models. SciUnit also contains code for visualization of model results, and command line tools for incorporating testing into continuous integration workflows. SciUnit is used in model validation in neuroscience via NeuronUnit, which implements an interface to several simulators and model description languages, handles test calculations according to domain standards, and enables automated construction of tests based on data from several major public data repositories. ------- The aim of these sessions is to stimulate discussion of the development practices and tools used by different teams to improve the software we use while also improving our knowledge of these practices and tools. We also hope to encourage more users of these tools to contribute to their development to ensure their longevity. If you develop software for neuroscience, we would love to hear about your development pipeline. Please get in touch with the Software WG on our communication channels[2]. The WG is a community based group that is open to everyone at all levels of their careers (academic or otherwise). Please introduce yourself to the community on our channels to get involved. [1] https://ocns.github.io/SoftwareWG/ [2] https://ocns.github.io/SoftwareWG/pages/contact.html On behalf of the Software WG, -- Thanks, Regards, Ankur Sinha (He / Him / His) Research Fellow at the Silver Lab | http://silverlab.org/ Department of Neuroscience, Physiology, & Pharmacology University College London, London, UK Time zone: Europe/London

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