- Comp-neuro - lists.cnsorg.org

EMBO Practical Course - Barcelona summer school for Advanced Modelling of Behavior (BAMB!), July 16-25, 2024
by Alexandre Hyafil Jan. 23, 2024

Jan. 23, 2024

The Barcelona summer school for Advanced Modelling of Behavior (BAMB! <http://www.bambschool.org>) teaches advanced techniques in model-based analysis of behavior (humans and other species) to cognitive and computational neuroscientists at PhD and early career levels. This will be achieved through structured lectures, talks, hands-on tutorials and group projects aimed at making knowledge obtained directly applicable to the participants' own research. We want the trainees to acquire both the conceptual basis and the technical skills that will enable them to pursue a full modelling approach on their own when they come back to their lab. The course is intended for PhD students and postdocs in cognitive, systems, and computational neuroscience with a solid background in computational/quantitative analysis to benefit maximally from the advanced training offered by the course. Proficiency in either Python or Matlab is also required. We seek a nice blend of experimentalists (cognitive psychology / neuroscience) and theoreticians (with or without experience in cognitive modeling). Scientists from underrepresented groups and countries are especially encouraged to apply. The school is an EMBO Practical Course <https://www.embo.org/conferences-training/> and is organized by the Centre de Recerca Matemática <http://www.crm.cat>. A limited number of travel grants and childcare grants will be available. Organizers: Alex Hyafil (CRM, Barcelona) Marion Rouault (CNRS, Paris Brain Institute) Heike Stein (ENS, Paris) Chris Summerfield (Oxford / Deepmind) Klaus Wimmer (CRM, Barcelona) Confirmed Faculty: Kenji Doya (OIST Okinawa) Maria Eckstein (Deepmind) Alex Hyafil (CRM, Barcelona) Jakob Macke (Tuebingen) Yael Niv (Princeton) Heike Stein (ENS, Paris) Chris Summerfield (Oxford / Deepmind) Anne Urai (Leiden) Klaus Wimmer (CRM, Barcelona) Dates and location: July 16-25, 2024, downtown Barcelona, Spain Applications are open until February 16, 2024. Please see the course website for further details: www.bambschool.org.

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Summer Workshop on the Dynamic Brain
by Eric Shea-Brown Jan. 22, 2024

Jan. 22, 2024

A warm invitation to apply to join the Summer Workshop on the Dynamic Brain. This is a computational neuroscience course, centered on student projects that leverage the wealth of Allen Institute data, particularly focused on neurophysiology, population dynamics, behavior, and connectivity data. Co-organized by the Allen Institute and the University of Washington’s Computational Neuroscience Center, the course takes place at UW’s Friday Harbor Laboratory in the San Juan Islands. This 2-week residential program is intended for researchers at the PhD student and postdoctoral level with an interest in developing the intersection of their scientific knowledge and their computational skills. While strong coding skills are not a prerequisite, there is a large emphasis on computation and coding during the course. Applications are due by February 1st, 2024. More information can be found on our Summer Workshop on the Dynamic Brain website. <https://urldefense.com/v3/__https://alleninstitute.org/events/summer-worksh…> If you have questions, please contact us at dynamicbrain(a)alleninstitute.org <mailto:dynamicbrain@alleninstitute.org>

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WCCI 2024 in Yokohama: submission deadline Jan 29
by Kenji Doya Jan. 22, 2024

Jan. 22, 2024

WCCI 2024 is a joint conference on Neural Networks, Fuzzy Systems and Evolutionary Computation. The paper submission deadline has been extended to January 29. We hope to see many of you in the waterfront city of Yokohama this summer. === IEEE WCCI 2024 Call for Papers June 30 - July 5, 2024 @ Yokohama, Japan https://2024.ieeewcci.org IEEE WCCI 2024 is the world’s largest technical event on computational intelligence, featuring the three flagship conferences of the IEEE Computational Intelligence Society (CIS) under one roof: The International Joint Conference on Neural Networks (IJCNN), the IEEE International Conference on Fuzzy Systems (FUZZ-IEEE) and the IEEE Congress on Evolutionary Computation (IEEE CEC). WCCI and IJCNN Keynote Speakers: * Marios M. Polycarpou, University of Cyprus * Bernadette Bouchon-Meunier, CNRS-Sorbonne Université * Simon See, Nvidia * Saori Tanaka, NAIST & ATR * Akira Oyama, JAXA * Johan Suykens, Katholieke Universiteit Leuven * Masashi Sugiyama, Riken & University of Tokyo * Plamen Angelov, Lancaster University * Yukie Nagai, University of Tokyo * Divyashree-Shivakumar Sreepathihalli, Google IMPORTANT DATES - 29 January 2024: Paper Submission Deadline - 15 March 2024: Paper Acceptance Notification - 1 May 2024: Final Paper Submission & Early Registration Deadline - 30 June - 5 July 2024: IEEE WCCI 2024 Yokohama, Japan PAPER SUBMISSION Please read the paper submission guidelines (https://2024.ieeewcci.org/submission) before submitting your papers. * Each paper should not reveal author's identities (double-blind review process). * Papers will be checked for plagiarism. The Program Committee reserves the right to desk-reject a paper if it contains elements that are suspected to be plagiarized. * Submissions should be original and not currently under review at another venue. * Each paper is limited to 8 pages, including figures, tables, and references. A maximum of two extra pages per paper is allowed (i.e, up to 10 pages), at an additional charge of $100 per extra page. * All papers must be submitted through the IEEE WCCI 2024 online submission system. * For special session papers, please select the respective special session title under the list of research topics in the submission system. * In order for your papers to be included in the congress program and in the proceedings, final accepted papers must be submitted, and the corresponding registration fees must be paid by May 1, 2024 (11:59 PM Anywhere on Earth). * IEEE WCCI 2024 will present the Best Overall Paper Awards and the Best Student Paper Awards to recognize outstanding papers published in each of the three conference proceedings (IJCNN 2024, FUZZ-IEEE 2024, IEEE CEC 2024). The awards will be judged by an Awards Committee and the recipient of each award will be given a certificate of the award and a cash prize. * It is the policy of WCCI 2024 that new authors cannot be added at the time of submitting final camera ready papers. Please ensure that you are following this guideline to avoid any issues with publication. * WCCI 2024 adopts EDAS as the submission system, available at the following link: https://edas.info/N31614 NOTE IEEE WCCI 2024 will be primarily an in-person conference. However, the organization acknowledges that for a wide variety of reasons not all members can physically attend the conference and that traveling may simply be impossible. Therefore, the conference will provide the possibility for remote presentation (live online talk with live online Q&A) for remote authors. At least one remote author must register for the conference (regular registration, as IEEE Member or Non-Member). In addition to delivering the live online talk, remote authors are also asked to provide a recording their talk, which will be made available to all attendees to be viewed at their own convenience. The recorded talk will also be used as a backup just in case there are Internet connection problems during the live online talk. Remote attendees can attend only online sessions whereas on-site attendees can attend all sessions (i.e., both online and on-site sessions). ---- Kenji Doya <doya(a)oist.jp> Neural Computation Unit, Okinawa Institute of Science and Technology Graduate University 1919-1 Tancha, Onna, Okinawa 904-0495, Japan Phone: +81-98-966-8594; Fax: +81-98-966-2891 https://groups.oist.jp/ncu

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3 Year Shanahan Fellowships at Allen Inst. + UW -- apply by Feb 1
by Eric Shea-Brown Jan. 21, 2024

Jan. 21, 2024

Sharing a unique and cool opportunity — the three year Shanahan Foundation Fellowships at the interface of data and neuroscience, open to early-career scholars from diverse disciplines, and co-hosted by the Allen Institute and the University of Washington’s Computational Neuroscience Center and eScience Institute in Seattle. Please head to https://alleninstitute.org/what-we-do/brain-science/careers/shanahan-founda… <https://alleninstitute.org/careers/internships-and-postbac/shanahan-foundat…>for more info and to apply to join us in Seattle, by Feb 1!

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Summer research internships at the FlatIron Institute, New York City
by Eero Simoncelli Jan. 20, 2024

Jan. 20, 2024

Graduate students and advanced undergraduates: *Spend a summer doing research at the Flatiron Institute in NYC!* Information about the Center for Computational Neuroscience: https://www.simonsfoundation.org/flatiron/center-for-computational-neurosci… Information about our summer internship program (application deadline: 2 Feb 2024): https://apply.interfolio.com/137388 *Eero Simoncelli*Scientific Director | Center for Computational Neuroscience | FlatIron Institute, Simons Foundation Silver Professor | Neural Science, Mathematics, Data Science, and Psychology | New York University https://www.cns.nyu.edu/~eero

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Postdoctoral researcher in computational neuroscience and neuroinformatics
by Daniele Marinazzo Jan. 19, 2024

Jan. 19, 2024

Dear colleagues I am happy to announce a postdoctoral position at Ghent University, Belgium, aligned with the initiatives of the EBRAINS 2.0 project, funded by the European Commission, with dozens of partners performing top level research across Europe. EBRAINS AISBL is a prominent contributor to the European digital neuroscience research infrastructure ( https://www.ebrains.eu/) Our exciting research program centers around DIGITAL TWIN Brain Models, leveraging neuroimaging data and the power of statistical inference. We aim to enhance scalability and reliability, facilitating the translation of personalized predictive medicine into clinical applications and innovations. Our goal is to seamlessly integrate this workflow into the EBRAINS ecosystem. The successful candidate will contribute to the development of the modeling and simulation framework essential for realizing the Digital Twin vision. More specifically, the selected candidate will contribute to building personalized workflows for biologically and anatomically inspired models for multiple datasets and to exploring different strategies for model inversion (from data to model structure and model parameters), exploiting the range of temporal and spatial scales present in EBRAINS. The outcomes will be integrated with data and models following the openMINDS metadata schemes and according to the BIDS standards. Please find all the info (including how to apply) at the link below https://jobs.ugent.be/job/Ghent-Postdoctoral-researcher-in-computational-ne…

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Multiple positions in the Naud Lab
by Richard Naud Jan. 19, 2024

Jan. 19, 2024

Centre for Neural Dynamics and Artificial Intelligence, University of Ottawa We are recruiting multiple postdoctoral fellows and graduate students for projects in NeuroAI. The successful candidate will become an integral part of the Neural Coding lab and participate in a collaborative research environment. We have positions within three larger projects: 1) mathematical modeling of the electrical stimulation of cortex (a project co-lead with MIT and MGH), 2) an applied AI project with high-throughput neuroscience data (part of the Brain-Heart Initiative), 3) plasticity in large spiking neural network for real world applications (sponsored by industrial partners). Ottawa is a vibrant city, capital of Canada. For more information, see https://neurodynamic.uottawa.ca/ottawa.html. Qualifications: physics, computer science, mathematics, or engineering. Start date: As soon as a suitable candidate is found. Submit: CV, statement of research interest and contact for 3 references. Deadline: We will start reviewing applications January 30, 2024. Contact: rnaud(a)uottawa.ca<mailto:rnaud@uottawa.ca> (Richard Naud)

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new neuroscience course for people from machine learning
by Goodman, Daniel F M Jan. 18, 2024

Jan. 18, 2024

Hi everyone, We made a free, open course on neuroscience for people with a machine learning or other quantitative background. You can use it to get started in computational neuroscience or just to indulge your neurocuriousity. I believe that neuroscience and ML can learn from each other and do better together than on their own. The course has 34 short videos from introductory topics right up to recent discoveries we still don't fully understand. We also have practical exercises focussed on open ended discovery, fully compatible with Google Colab. Check out the course website at: https://neuro4ml.github.io/ Over the next year, I'll be turning this into an 'interactive textbook' with videos, text and runnable code in one place, and welcoming contributions on new topics, corrections, etc. through GitHub issues. All our materials are freely licensed for reuse in your own courses too. Why this new course? There's a lot of intro neuroscience courses out there, and a lot of ML for neuroscientists, but I wanted this one to be specifically for quantitative people who are curious about the brain, interested in how it might be similar and different to ML. We hope you'll enjoy it! Thanks! Dan Goodman and Marcus Ghosh Imperial College London

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Call for applications for Systems Vision Science Virtual Summer School & Symposium, June 19 -July 12, 2024
by Pavlovic, Maria Jan. 18, 2024

Jan. 18, 2024

Systems Vision Science Virtual Summer School & Symposium: June 19th - July 12th, 2024 -------------------------------- Applications are invited for a virtual edition <https://summerschool.lizhaoping.org/virtual-systems-vision-science-summer-s chool-symposium-2024/> of the Systems Vision Science Summer School and Symposium that took place in Max Planck Institute for Biological Cybernetics in Tuebingen, Germany in August 2023 <https://summerschool.lizhaoping.org/> . This year, the virtual edition enables students to attend from afar by formal lectures via Zoom and informal and social communications via a Slack channel. Systems Vision Science combines computational, behavioral, and neuroscience methods to discover functions and algorithms for vision in various brain regions and their implementations in neural circuits. This summer school is designed for everyone interested in gaining a systems level understanding of biological vision. We plan a coherent, graduate-level, syllabus on the integration of experimental data with theory and models. The syllabus content will be very similar to the edition in 2023, the learning format, the delivery, and social interactions will be adjusted to suit the virtual format. Experience or knowledge in (A) computational methods, (B) visual psychophysics, and (C) vision neuroscience, is not required. However, experience in at least one of (A), (B), and (C), and a readiness to learn, is expected. The Summer School will be followed by a Systems Vision Science Virtual Symposium on July 12th. All admitted summer school students will be invited to attend this symposium and are encouraged to submit for a presentation at the symposium. The symposium will also feature two invited keynote presentations. A certificate of completion of the summer school course will be provided after the student's successful completion of the summer school. -------------------------------- Important Dates: March 31, 2024 Deadline for applications April 12, 2024 Notification of acceptance April 29, 2024 Registration fees due June 19 - Virtual Systems Vision Science Summer School takes place July 10, 2024 (formal lectures via Zoom and informal and social communications via a Slack channel) July 12, 2024 Virtual Systems Vision Science Symposium takes place (3 -7 pm German time) -------------------------------- Please click here <https://summerschool.lizhaoping.org/virtual-systems-vision-science-summer-s chool-symposium-2024/> to find more details and to apply by March 31, 2024. Summer School admission will be based on interest/motivation and prior knowledge/experience of the applicants, and on how much the applicants could benefit from participation. Please direct inquiries to svs.summerschool(a)tue.mpg.de <mailto:svs.summerschool@tue.mpg.de> -------------------------------- Organizing Team Li Zhaoping Maria Pavlovic Junhao Liang Max Planck Institute for Biological Cybernetics University of Tuebingen www.lizhaoping.org <http://www.lizhaoping.org>

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Announcing Open Source Brain v2.0: NetPyNE, NWB Explorer and JupyterLab; ModelDB models and DANDI Archive datasets
by Padraig Gleeson Jan. 17, 2024

Jan. 17, 2024

<Apologies for cross posting> We would like to announce a major new version of the Open Source Brain platform (v2.0) we have been working on which has a range of new features for you to try: https://v2.opensourcebrain.org. You can create cloud based, persistent workspaces which contain models and data from a number of sources (https://v2.opensourcebrain.org/repositories) including: - All *OSBv1* projects incorporating NeuroML and PyNN models - All *ModelDB* entries - All *BRAIN Initiative DANDI Archive* datasets containing NWB files Inbuilt applications which can open these workspaces include: *- NetPyNE UI*, a 3D graphical application for neuronal simulations (NeuroML compliant) *- NWB Explorer* for opening and visualising data in NWB files *- JupyterLab*, a full interactive Python environment, with a number of computational neuroscience, data analysis and machine learning packages preinstalled. Full documentation is at https://docs.opensourcebrain.org and a Guided Tour introducing the main features of the platform is here <https://docs.opensourcebrain.org/OSBv2/Guided_tour.html>. We are very keen for new users to try out our platform. Please note that you will require a different username/password for OSBv2 from OSBv1. We are also very happy to make dedicated resources available on the platform to support classes/tutorials/computational neuroscience schools. The Open Source Brain Initiative aims to: - Make neuroscience experimental data and computational models from around the world easily findable in a single location - Provide a free to use, collaborative, web based, interactive computing platform that integrates state of the art software tools for accessing and working with large scale data sets and computational models. - Encourage the use of standards for making research outputs more FAIR (Findable, Accessible, Interoperable and Reusable): OSBv2 supports NeuroML for models and NWB for data. Please get in contact if you would like to help us with any of these goals! Regards, The OSB Team

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