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Bernstein 2017 Workshop: "Multiscale modeling and simulation"
by Salvador Dura Aug. 10, 2017

Aug. 10, 2017

Dear All, We would like to bring your attention to the "Multiscale modeling and simulation" workshop at the Bernstein Conference 2017, Sept 12-13, Göttingen, Germany. Website: http://www.nncn.de/en/bernstein-conference/2017/satellite-workshops/multisc… Short abstract: Understanding brain function requires characterizing the interactions occurring across many temporal and spatial scales. Mechanistic multiscale modeling aims to organize and explore these interactions across these scales. Multiscale models can provide insights into how changes at the molecular and cellular levels affect dynamics at local networks and brain areas. At the highest levels, they allow us to connect neural activity to theories of behavior, memory and cognition. The recent introduction of large neuroscience projects in US and EU Brain Research through Advancing Innovative Neurotechnologies (BRAIN) and Human Brain Project (HBP) respectively provide an opportunity to rapidly gather new and more accurate data to incorporate into the multiscale models. This workshop will present some of the latest multiscale modeling tools and approaches in neuroscience, as well as representative examples of datadriven multiscale neural simulations. The workshop aims to encourage both computational and experimental neuroscientists to make use of multiscale modeling in their research. Organizers: Salvador Dura-Bernal and Bill Lytton (SUNY Downstate) Speakers: Tue, Sept 12: - Bill Lytton (SUNY Downstate) - Jean Pierre Changeux (Pasteur Institute) - Volker Steuber (University of Hertfordshire) - Robert McDougal (Yale University) - Salvador Dura-Bernal (SUNY Downstate) - Cliff C Kerr (University of Sydney) Wed, Sept 13: - Szabolcs Kali (Hungarian Academy of Science/HBP) - Marianne Bezaire (Boston University) - Daniel Durstewitz (ZI Mannheim) - Kael Dali (Allen Institute for Brain Science) We look forward to seeing you there! Best Salva -- Salvador Durá-Bernal, Ph.D. Research Assistant Professor State University of New York Downstate Medical Center

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postdoc position
by Jean Daunizeau Aug. 4, 2017

Aug. 4, 2017

Dear all, Please find below the description of an open postdoc position. Do not hesitate to contact me should you require additional information. Best, Jean. **** Postdoctoral position in computational cognitive neuroscience **** This position is available at the Brain and Spine Institute (Paris, France) <http://icm-institute.org/en/>, in the Motivation, Brain & Behaviour team <https://sites.google.com/site/motivationbrainbehavior/>, under the direction of Dr. Jean Daunizeau. The position will follow standard French salaries at INSERM. Expected starting date: Fall 2017. *Computational cognitive neuroscience* uses mathematical modelling as a tool to understanding how mental processes (e.g., perception, memory, attention, emotion, etc...) are controlled by brain circuits. Its breadth typically ranges from biological models of neural network activity to cognitive models of brain information processing, to machine learning approaches to neuroscience data. In line with this approach, the Motivation, Brain & Behaviour group addresses the issue of identifying the* neural bases of motivation in health and disease* with a strong multi-disciplinary focus. The successful candidate will team with students with very diverse academic backgrounds (from neurology, psychiatry, biology and psychology, to philosophy, to economics and mathematics). S/he will be expected to contribute to all aspects of the research, including computational modelling, as well as data collection and analysis. A non-exhaustive list of possible projects is provided here: https://sites.google.com/site/jeandaunizeauswebsite/students. Required skills: - *[Mandatory]* Ph.D. either in Cognitive Neuroscience or in Engineering (or related fields) - *[Mandatory]* Autonomy in programming in MATLAB, Python or C - *[Desired]* Experience in computational models of neural and/or cognitive processes - Fluency and solid writing skills in English are expected. French is not a requirement. Please apply to jean.daunizeau(a)gmail.com with a recent CV, a brief (1 page) summary of your previous research and a letter of motivation. -- Jean Daunizeau Motivation, Brain and Behaviour group (ICM) web: http://sites.google.com/site/jeandaunizeauswebsite/

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AoN Brainhack Warsaw 2017 - call for project proposals
by Natalia Bielczyk Aug. 4, 2017

Aug. 4, 2017

AoN Brainhack Warsaw 2017 November 18-19, 2017 University of Warsaw, Warsaw, Poland *— The call for proposals extended to 1st September 2017 — * On the weekend of 18-19th November 2017, the first edition of *AoN Brainhack* *Warsaw* will take place. During this two-day event dedicated to students and PhD students, we will work in teams on neuroscience-related projects. The aim of the event is to meet new, enthusiastic researchers, make new friendships in academia, learn, share the knowledge on data mining and brain research, but also promote open science in the spirit of the whole Brainhack community (Craddock et al., 2016). The venue and the exemplary projects are presented on our website: *https://brainhackwarsaw.github.io/ <https://brainhackwarsaw.github.io/>* Please note this Brainhack is a satellite event for the interdisciplinary Aspects of Neuroscience conference which will take place on 24-26th November 2017 in Warsaw. Participation in the conference is not mandatory but we encourage to also consider this. Important deadlines: Deadline for project proposals: September 1st, 2017 Announcement of projects: September 15th, 2017 Participant registration starts: September 1st, 2017 Deadline for participant registration: November 1st, 2017 At the moment, the *call for project proposals* is open. The proposals can include various forms of a group activity, e.g., data analysis, app development, a two-day discussion club, developing a new software etc. The organizers will provide a few openly available datasets to the project authors, but developing projects using private datasets is also welcome. *Please send the project proposals and all the related questions to the mailing address: **brainhackwarsaw(a)gmail.com <brainhackwarsaw(a)gmail.com>* Also, please team up with us! Join our channel #brainhack-warsaw-2017 on Brainhack Slack project (https://brainhack-slack-invite.herokuapp.com) for the updates, and share your own ideas with us! We are looking forward to working with you at the AoN Brainhack Warsaw! *The AoN Brainhack Warsaw 2017 team:* Natalia Bielczyk, MSc, Donders Institute for Brain, Cognition and Behavior, Nijmegen, The Netherlands (natalia.bielczyk(a)gmail.com) Krzysztof Bielski, MSc, Faculty of Psychology, University of Warsaw, Warsaw, Poland Michał Bola, PhD, Laboratory of Brain Imaging, Nencki Institute of Experimental Biology, Warsaw, Poland Daniel Borek, MSc, Faculty of Physics, University of Warsaw, Warsaw, Poland, (dtborek@g <norbert.kopco(a)upjs.sk>mail.com) Beata Goźlińska, BSc, Faculty of Physics, University of Warsaw, Warsaw, Poland

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Post-doc positions in analyses of electron microscopic images from the brain (Kyoto U, Japan)
by Hidetoshi Urakubo Aug. 4, 2017

Aug. 4, 2017

Dear members of Comp-neuro mailing list, Integrated Systems Biology Lab at Kyoto University invites applications for research position for analyses of three-dimensional microscopic images and/or functional magnetic images (fMRI, for example) from the animal/human brain, with a strong motivation into systems/computational neuroscience. We look forward to your applications and recommendations. The full advertisement is available below. On behalf of Prof. Shin Ishii Hidetoshi Urakubo ============================================== Shin Ishii Laboratory, Department of Systems Science, Graduate School of Informatics, Kyoto University Yoshida-Honmachi 36-1, Sakyo-ku, Kyoto 606-8501 Japan Phone: +81-75-753-4908 Fax: +81-75-753-4907 Email: urakubo-h(a)sys.i.kyoto-u.ac.jp ============================================== [[[ Post-doc positions in analyses of electron microscopic images from the brain ]]] We are seeking a highly motivated post-doc researcher, with a background in 3d/bio image processing and/or computational neuroscience. We are conducting research projects, “Brain Mapping by Integrated Neurotechnologies for Disease Studies (Brain/MINDS; up to 2019/3/31; http://brainminds.jp/en/ ; Phil. Trans. R. Soc. B 370: 20140310),” and “Brain Information Dynamics underlying Multi-area Interconnectivity and Parallel Processing (Grant-in-Aid for Scientific Research on Innovative Areas, MEXT, Japan; up to 2022/3/31).” Those projects aim to map the structure and function of neuronal circuits to understand the vast complexity of the human/marmoset/rodent brains. The candidate will work on the projects on 3D reconstitution of marmoset brain atlas from 3D microscopic images (from EM and/or Optical) under collaboration with experiment teams. For this position, a PhD or a MD degree, a proven track record of peer-reviewed publications, and solid communication skills in English and/or Japanese are essential. All projects are done with our tenure track and post-doc researchers of various backgrounds including systems biology, bioinformatics, computational biology, mathematical engineering, and machine learning. Our laboratory also has a strong collaboration with other laboratories in Advanced Telecommunications Research Institute International (ATR) and RIKEN Brain Science Institute. [Job title and Job description] Title is a Full-time Researcher / Full-time Research Engineer The position is open after October 1st 2016 (negotiable) Work location is Yoshidahonmachi 36-1, Sakyo-ku, Kyoto-city, Japan. 606-8501 The contract is annually renewable up to the end of those projects based on the evaluation. Salary will be commensurate with qualifications and experience. Social insurance will be applied. Days off include weekends, public holidays, Year-end and New Year holidays, Foundation Day, and summer vacation. These and other provisions are in accordance with Kyoto U regulations (Kyoto University’s regulations). [Application and required documents] Please send the following five materials to the address below, either in printed or electronic form: 1. Complete CV 2. List of publications 3. Reprints of 1 to 3 major publications 4. Document (one or two pages in A4 or letter size) describing: - Summary of your previous research - Interests and proposal for research 5. Two letters of recommendation (including one from the current supervisor, if available) [Selection process] Selection will be made based on application screening and interviews. [Requirements] Applicants must: - have a Ph.D. (or be near completion). - have strong motivations and ambitions to participate in the research above. [Number of openings] One or two [Deadline for application] Nov 1st (will remain open if positions are not filled) [Send application to] Shin Ishii Integrated Systems Biology Laboratory, Graduate School of Informatics, Kyoto University Yoshida-honmachi, Sakyo, Kyoto 606-8501, Japan Email: Shin Ishii <ishii-secr [at] sys.i.kyoto-u.ac.jp> http://ishiilab.jp/kyoto/en/

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Postdoctoral positions in systems/computational neuroscience at the University of Pennsylvania
by Maria Geffen Aug. 3, 2017

Aug. 3, 2017

Postdoctoral positions in systems/computational neuroscience at the University of Pennsylvania The Geffen Laboratory of Auditory Coding at the University of Pennsylvania ( http://www.med.upenn.edu/hearing ) has an opening for an experimental and a computational neuroscience postdoctoral fellow positions. We are looking for energetic, talented, friendly, enthusiastic and creative researchers who have recently completed or are about to complete their PhD. Qualifications: experience in systems, computational or molecular neuroscience methods; excellent quantitative skills and proficiency or willingness to learn scientific programming, such as Matlab or python. Our laboratory seeks to deepen our understanding of neuronal circuits and dynamics of neuronal populations contributing to auditory perception and learning. We use state-of-the-art methods including two-photon imaging of Calcium activity in behaving, head-fixed rodents, large-scale electrophysiological chronic and acute recordings, optogenetic, pharmacological and behavioral techniques, in combination with computational modeling and theoretical work. Projects underway in the laboratory include: investigating intra-cortical and subcortical circuits supporting auditory adaptation to statistical regularities of sounds; identifying neuronal circuits for hearing in the presence of noise and in complex acoustic environments; unraveling neuronal circuits controlling learning-driven changes in auditory perception. The Geffen Laboratory is a creative, productive and collaborative group, and the postdoctoral fellows will have many opportunities to interact and collaborate with members of our and other laboratories across the Penn campus and beyond. We are part of the Hearing Research Center, the Computational neuroscience initiative (https://cni.upenn.edu/) and the Mahoney Institute of Neurosciences (http://www.med.upenn.edu/ins/) University of Pennsylvania is a To apply, please send a CV along with a cover letter briefly summarizing your research interests and pdfs of recent publications to mgeffen(a)med.upenn.edu <mailto:mgeffen@med.upenn.edu> .

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CBIC 2017 deadline extension (15.08.2017)
by Luis Martí Aug. 1, 2017

Aug. 1, 2017

Dear colleagues, Please disseminate to interested parties and apologies for multiple postings. All the best, LM XIII Brazilian Congress on Computational Intelligence (CBIC 2017) ----------------------------------------------------------------- Call for Papers - http://www.cbic2017.org On behalf of the organizing committee, it is our pleasure to invite you to the XIII Brazilian Congress on Computational Intelligence -XIII Congresso Brasileiro de Inteligência Computacional- (CBIC 2017) that will take place at the Institute of Computing of the Universidade Federal Fluminense in Niterói, Rio de Janeiro, Brazil from 30 October to 1 November 2017. CBIC 2017 aims to provide a high-level international forum for scientists, researchers, engineers, professionals, and educators to disseminate their latest research results and exchange views of the future research directions in the area of computational intelligence. In this edition of CBIC, we have the pleasure of having top-notch researchers as keynote speakers: - Marc Schoenauer (INRIA-Saclay/LRI/Université Paris-Saclay, France), - José Manuel Molina López (Universidad Carlos III de Madrid, Spain), and - José A. Lozano (University of the Basque Country and Basque Center for Applied Mathematics, Basque Country, Spain). Paper submissions should be 10-12 pages long, written in English, Portuguese or Spanish using the Springer LNCS style. Topics of interest of CBIC are organized in three tracks (but not limited to them): - Evolutionary, swarm and nature-inspired computation: genetic algorithms, evolutionary multi-objective optimization, estimation of distribution algorithms, genetic programming, artificial immune systems, swarm intelligence, collective intelligence, evolvable hardware, bio-inspired methods, etc. - Neural and machine learning systems: artificial neural networks, deep learning, machine learning, molecular and quantum computing, complex networks, reinforcement learning, hybrid systems, etc. - Fuzzy and stochastic reasoning: fuzzy systems, fuzzy control and decision making, uncertainty analysis, rough sets, fractals, multi-agent systems, game theory, etc. For submission instructions and online submission forms go to http://www.cbic2017.org/Submissions. Important dates --------------- - Workshop and tutorial proposal deadline: 15.07.2017 UTC-12:00 - Workshop and tutorial acceptance notification: 30.07.2017 - Paper submission deadline (extended): 15.08.2017 UTC-12:00 - Paper acceptance notification: 01.09. 2017 - Registration opens: 07.09.2017 - Early registration ends: 01.10. 2017 UTC-12:00 - CBIC 2017 conference: 30.10 — 01.112017 Looking forward to welcoming you in Niterói, Luis Martí - General Chair Nayat Sánchez-Pi - Program Chair

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5-year research fellow position in Neuromorphic Machine Learning
by Schmuker, Michael Aug. 1, 2017

Aug. 1, 2017

Applications are invited for a 5-year research position in the Biocomputation group at the University of Hertfordshire, under the supervision of Dr Michael Schmuker. This position offers the unique opportunity to explore the interdisciplinary field of neuromorphic machine learning, branching out into artificial intelligence, computational neuroscience, robotics and data science. We are looking for excellent candidates who are keen to explore neuro-inspired machine learning and artificial intelligence using specialised hardware systems such as SpiNNaker and BrainScaleS. For more details and to apply please see the advert at http://www.jobs.herts.ac.uk (reference 014832, deadline: 21st August 2017). — Dr Michael Schmuker Senior Lecturer (Assistant Professor) Biocomputation group University of Hertfordshire http://biomachinelearning.net

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PhD position in Neuroscience at the Bio-Imaging Lab, University of Antwerp, Belgium
by Georgios A. Keliris July 31, 2017

July 31, 2017

PhD position in Neuroscience at the Bio-Imaging Lab, University of Antwerp, Belgium The Faculty of Pharmaceutical, Biomedical and Veterinary is seeking to fill a full-time (100%) vacancy (m/f) in the Department of Biomedical Sciences (Bio-Imaging Lab) under the supervision of Prof. Georgios A. Keliris PhD position investigating the role of neuromodulation in learning and memory The goal of the project is to understand the neural mechanisms modulating learning and memory in rats. A multimodal approach and combination of state-of-the-art methods (MRI-imaging, electrophysiology, optogenetics and pharmacogenetics) will be used to uncover both the global network as well as specific cellular mechanisms. This approach will also be employed in animal models of neurodegenerative diseases such as Alzheimer’s Disease. Job description · You prepare a doctoral thesis in the field of neuroscience / biomedical imaging. · You publish scientific articles related to the research project of the assignment. Profile and requirements · You hold a master degree in neuroscience, biomedical sciences, or related fields. · You can submit outstanding academic results. · Students in the final year of their degree can also apply. · Foreign candidates are encouraged to apply. · Your academic qualities comply with the requirements stipulated in the university’s policy <https://www.uantwerp.be/en/about-uantwerp/mission-vision/three-core-tasks/r…>. · You are quality-oriented, conscientious, creative and cooperative. · You are fluent in English and have strong communication skills, both in writing and oral presentations · You are a team player · Strong background in one or more of: imaging, computational neuroscience, mathematics, programming (e.g. Matlab/Python/C/…) will be considered as a bonus We offer · a doctoral position for a period of one year, with the possibility of renewal for a further three-year period after positive evaluation; · the start date is as soon as possible · a dynamic and stimulating work environment. How to apply? · Applications should be submitted to Georgios.Keliris(a)uantwerpen.be <mailto:Georgios.Keliris@uantwerpen.be> and should include a copy of your CV and a cover letter. · A pre-selection will be made from amongst the submitted applications. · More information about the application and the position can be obtained from Prof. Georgios A. Keliris

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Postdoctoral position: cortical microcircuit dynamics
by Okun, Michael (Dr.) July 28, 2017

July 28, 2017

Applications are invited for a postdoctoral position to carry out research on cortical microcircuit dynamics. Research will involve analysis and modelling of cortical population recordings, focusing on changes occurring in the infraslow frequencies (0.01 - 1 Hz). The position is at the Centre for Systems Neuroscience, University of Leicester, UK. The project will involve advanced computational and experimental approaches - our experimental facilities include in vivo electrophysiology and 2-photon microscopy setups. Additional details on the PI and the Centre can be found at www2.le.ac.uk/departments/npb/people/mo178 and www.le.ac.uk/csn An ideal applicant would have a quantitative background and strong computational, programming and statistical skills (e.g. a PhD in computational/systems neuroscience, applied mathematics, computer science or related subjects). Previous experience in systems neuroscience research is a significant advantage. Start date is flexible and candidates will be considered on a rolling basis, however anyone applying before 14th of September is guaranteed to be considered. Funding for this position is available for (at least) 3 years. Leicester has a large student community thanks to its two universities, and is within easy reach (~1 hour by train) of London, Birmingham and Sheffield. Interested applicants are most welcome to contact Michael Okun (m.okun(a)le.ac.uk)

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PhD Scholarship on Model-based Cognitive Neuroscience
by Jelmer Borst July 27, 2017

July 27, 2017

PhD Scholarship on Model-based Cognitive Neuroscience The Institute of Artificial Intelligence of the University of Groningen offers a four-year scholarship for a PhD position on model-based cognitive neuroscience. Model-based cognitive neuroscience is the area of research that bridges the disciplines of computational cognitive modeling and cognitive neuroscience. Cognitive models – be it symbolic process models, mathematical models, or neural network models – are notoriously hard to evaluate based on behavioral measures alone. For that reason, researchers have turned to neuroscience (M/EEG, fMRI) as an additional source of information. At the same time, neuroimaging data is often so complex that it is difficult to fully account for with traditional analysis methods. As a solution, cognitive and mathematical models have been used within the analysis stream to interpret neural measures directly. This dual approach, using neuroscience to inform models and models to inform neuroimaging analyses, is very powerful, and has led to the emerging field of model-based cognitive neuroscience (see a recent special issue of the Journal of Mathematical Psychology for an introduction: Palmeri, Love, & Turner, 2017; Turner, Forstmann, Love, Palmeri, & van Maanen, 2017). The PhD position is available in the cognitive modeling group, under supervision of Jelmer Borst. The goal of our group is to better understand cognitive processes in the human mind. To achieve this, we combine computational modeling with fMRI, EEG, and MEG data, and also apply machine learning techniques to analyze neural data. Top candidates will be invited to write and develop their own research project within the general scope of this research line. The selection procedure for the scholarship is as follows: 1. Candidates apply by submitting a cover letter and CV (see below for details). 2. Based on the cover letters, several candidates will be invited to write a short research proposal within the topic of model-based neuroscience. 3. These candidates will be asked to present this proposal as part of the job interview. 4. After the selection, the candidate’s proposal will be further developed in collaboration with the PhD advisors: Jelmer Borst, Niels Taatgen, and Hedderik van Rijn. Qualifications Successful candidates will have completed a Master’s degree (or equivalent) in Cognitive Neuroscience, Artificial Intelligence, or another field of science relevant for the position. The ideal candidate has experience with M/EEG or fMRI and cognitive modeling, and has strong programming skills. Conditions The PhD student will be enrolled in the PhD Scholarship Programme and receive a scholarship of € 2027 per month (gross) from the University of Groningen for a period of four years. Date The preferred start date is November 1, 2017, but this can be postponed to February 1, 2018. Application Please see the attachment for details on the application procedure. The application deadline is August 30. For more information, contact Jelmer Borst (j.p.borst(a)rug.nl <mailto:j.p.borst@rug.nl>). http://www.rug.nl/education/phd-programmes/phd-scholarship-programme/phd-sc… <http://www.rug.nl/education/phd-programmes/phd-scholarship-programme/phd-sc…> -- Jelmer Borst Assistant Professor University of Groningen Dept. of Artificial Intelligence E: j.p.borst(a)rug.nl <mailto:j.p.borst@rug.nl> W: http://www.jelmerborst.nl/ <http://www.jelmerborst.nl/>

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