- Comp-neuro - lists.cnsorg.org

EITN Fall School in Computational Neuroscience : Applications extended to 25 July 2021
by Zélie Tournoud July 2, 2021

July 2, 2021

Dear colleagues, We are happy to let you know that the application deadline for the *EITN Fall School in Computational Neuroscience* has been extended to the *25th of July 2021*. This *10-days intensive course in computational neuroscience* will take place in *P**aris, France from 15 to 24 September 2021*. This is a yearly event, although previous occurrences took place in the spring. We choose to keep it relatively small-scale in order to facilitate interactions between participants and teaching staff, there are about 20 seats available. There will, therefore, be a selection made after applications are closed. We encourage you to share the word widely with your collaborators and networks so that everyone who might be interested can get the chance to apply. Applications need to be addressed by email with a *resume (CV)* and a *cover letter* at *eitn(a)neuro-psi.fr*. Please make sure to use an explicit email title such as "Application to EITN Fall School". *Organizers: *Sacha Van Albada (Julich), Albert Gidon (U Berlin), Alain Destexhe (CNRS), Gorka Zamora-Lopez (UPF) and Spase Petkowski (AMU) *Faculty:* Nicolas Brunel (Duke University) Mallory Carlu (CNRS) Hermann Cuntz (Max Planck Frankfurt) Damien Depannemaecker (CNRS) Alain Destexhe (CNRS) Michael Dick (Julich) Renato Duarte (Julich) Gaute Einevoll (MBU) Kirsten Fisher (Julich) Albert Gidon (U Berlin) Jennifer Goldman (CNRS) Moritz Helias (Julich) Christian Keup (Julich) Anno Kurth (Julich) Mario Lavanga (AMU) Jean-Didier Lemarechal (AMU) Marja-Leena Linne (U Tempere) Jorge Mejias (UVA) Spase Petkowski (AMU) Marcel Stimberg (Institut de la Vision) Bartosz Telenczuk (CNRS) Fererico Tesler (CNRS) Nuria Tort-Colet (CNRS) Sacha Van Albada (Julich) Gorka Zamora-Lopez (UPF) *Why join?* * 10 days of intensive training in computational neuroscience provided by researchers from all over Europe * Small scale event: get to connect! * A complete program: o Cellular models, and models of brain signals Circuit models and networks o Mean-field models o Whole-brain models * Hands-on learning schedule based on: o Morning classes and tutorials o Group projects in the afternoon o Free time in the evenings to visit Paris *Selection criteria:* 1. Work or study in neuroscience or related 2. Experience in python programming would help 3. Priority to PhD students, although Master students and post-docs are welcome to apply *Practical information:* * Subscription fee 400€. * If selected, you will need to bring your own laptop with a few pre-installed programs. * The tuition fee includes lunch, coffee, access to conference facilities and internet connection during the 10 days of the course. You can also consult these information online <https://www.eitn.org/index.php/calendar-event/eventdetail/737/-/eitn-fall-s…> or by downloading the PDF flyer: https://www.eitn.org/images/events/EITN-FallSchool-2021_Flyer.pdf Thank you very much for applying or sharing with your relevant contacts. Kind regards, The EITN Team

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Scientific Software Engineer or Data Scientist, deadline July 11th 2021, Salary level E13 TVL
by Jochem Rieger July 2, 2021

July 2, 2021

Dear colleagues, we have an open DFG-funded position for 3+2 years for the development of data infrastructure including storage, streaming and analysis tools for reproducible science based on the BIDS standard at our Neuroimaging Unit at University of Oldenburg, Germany. Link to the announcment: https://uol.de/stellen?stelle=68111 Application deadline is July 11th 2021 The position is ideal for networking in the open science community as it includes workshop organization and interaction with the open (neuro)science community. It is complemented by a full time technician position for support. The salary level is E13. The exact salary is dependent on experience and family status. But the rough numbers are on the web. The Neuroimaging Unit hosts a 3T Siemens Prisma MRI-scanner and a 306 channel Triux MEG system. The university hosts a prestigious DFG-funded Cluster of Excellence in Hearing Research and the Dept. of Psychology was recently evaluated as excellent with the highest third party funding rate among psychologies in Lower Saxony. The city of Oldenburg has a high standard of living, Hamburg, Bremen and the north sea are between 30 to 90 min distance. We are looking forward to your application! Best regards, Jochem The Neuroimaging Unit and the Applied Cognitive Neuropsychology Lab at the School of Medicine and Health Sciences of the University of Oldenburg is seeking to fill the position of a *Scientific Software Engineer or Data Scientist (m/f/d)* *(Salary level E13 TVL, 100%)* ** for the development of open and reproducible neuroscience tools and processing pipelines*.* The position is embedded in a DFG Core Facility grant and is available*as soon as possible**until 30^th of September 2023 (with the possibility to extend another 2,5 years after successful evaluation and extension of the project)*. The position is suitable for part-time work. The Neuroimaging Unit hosts a state-of-the-art MEG (Elekta Triux) and an MRI (Siemens Prisma 3T) and is embedded in an excellent interdisciplinary scientific environment with a strong research focus on neurosensory, neurocognitive, and medical research. The successful candidate is expected to actively perform research on and contribute to the implementation of a standardized neuroscience data acquisition, reproducible analysis pipelines and data storage for open science building on the BIDS standard. He/she should further contribute to community efforts and dissemination. Candidates should have a strong motivation to contribute to the community of developers open science tools. The development can include scientific projects, as long as they fit into the research focus of the lab (machine learning in cognitive neuroscience, speech processeing, and human state monitoring) but tool and processing pipeline development comprises the main part of the position. Candidates are expected to have an academic university degree (Master or equivalent) in the field of informatics, engineering, neuroscience or psychology and have shown their ability to perform excellent scientific work, demonstrated by an excellent publication record. Prior experience with the BIDS standard as well as its programming, experience with neuroimaging techniques and data analysis (especially fMRI or MEG/EEG) and fluency in English is required. Experience with open science tools and databases, other neurophysiological modalities, as well as knowledge of German are desirable. The University of Oldenburg is dedicated to increase the percentage of female employees in the field of science. Therefore, female candidates are strongly encouraged to apply. In accordance to § 21 Section 3 NHG, female candidates with equal qualifications will be preferentially considered. Applicants with disabilities will be given preference in case of equal qualification. Please send your application including a cover letter, CV, list of potential referees, links to recent publications and copies of certificates for academic grades to Prof. Dr. Jochem Rieger, Department of Psychology, University of Oldenburg, 26111 Oldenburg, Germany; (jochem.rieger(a)uni-oldenburg.de <mailto:jochem.rieger@uni-oldenburg.de>). Electronic applications (one pdf file) are preferred. For inquiries please use the same contact. The application deadline is*11*th of July 2021**. -- Prof. Dr. rer. nat. Jochem Rieger Head of Applied Neurocognitive Psychology Faculty VI Carl-von-Ossietzky University 26111 Oldenburg Germany Phone: +49(0)4417984533 Fax: +49(0)4417983865

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NERKA8 Summer Course “Ion Channels and Neuronal Excitability”
by luiza filipis July 1, 2021

July 1, 2021

Dear all, It is our pleasure to invite you to the NERKA8 Summer Course *“Ion Channels and Neuronal Excitability” *to be held *this year and in person* *September 8-12, 2021 *in Kotor, Montenegro. The course is organized by the *Faculty of Biology University of Belgrade* within the *NENS* School PhD program on *Neurobiology*. This school is to cover topics of *Ion Channels and Neuronal Excitability – techniques, modeling, physiology & pathology*. Information on application, deadlines, stipends and programm can be found on the website http://clm.bio.bg.ac.rs/neurobiology-course-2021/ -- Luiza Filipis,PhD Equipe OPTIMA Laboratoire Interdisciplinaire de Physique (LIPhy), Université Grenoble Alpes et CNRS UMR 5588, Bat. E45, 140 avenue de la physique, Domaine univ., 38402 St Martin d'Hères cedex, FRANCE 33(0)476514731, Fax +33(0)476635495. luiza.filipis(a)univ-grenoble-alpes.fr http://marco-canepari.wix.com/neuron-imaging-team

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Modellers Workshop for the Brain Dynamics Toolbox
by Stewart Heitmann July 1, 2021

July 1, 2021

Modeller’s Workshop for the Brain Dynamics Toolbox Online Course. Enrolments open 1-18 July 2021. This is a self-paced online course for researchers and students who wish to program their own dynamical models using the Brain Dynamics Toolbox (bdtoolbox.org<https://bdtoolbox.org/>). Participants learn the art of programming differential equations to simulate neuronal dynamics. Topics include programming Ordinary Differential Equations, Partial Differential Equations, Delay Differential Equations, Stochastic Differential Equations, Auxiliary Plot Functions and command-line tools. Example code is provided in all cases. Study time is 8 hours. Course Website https://bdtoolbox.org/p/modellers-workshop/ Important Dates Early-bird enrolments ($125) close Friday 9th July, 2021. Late enrolments ($150) close Sunday 18th July, 2021. Stewart Heitmann | Computational Scientist Victor Chang Cardiac Research Institute | Lowy Packer Building | 405 Liverpool St, Darlinghurst NSW 2010 Australia E: s.heitmann(a)victorchang.edu.au<mailto:s.heitmann@victorchang.edu.au> | @VictorChangInst Disclaimer The information contained in this communication from the sender is confidential. It is intended solely for use by the recipient and others authorized to receive it. If you are not the recipient, you are hereby notified that any disclosure, copying, distribution or taking action in relation of the contents of this information is strictly prohibited and may be unlawful. This email has been scanned for viruses and malware, and may have been automatically archived by Mimecast Ltd, an innovator in Software as a Service (SaaS) for business. Providing a safer and more useful place for your human generated data. Specializing in; Security, archiving and compliance. To find out more visit the Mimecast website.

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Tutorials on Allen Institute data and tools for computational neuroscience at CNS*2021
by Anton Arkhipov June 30, 2021

June 30, 2021

Dear all, Please join us for pre-CNS*2021 tutorials on June 30 and July 1: “From synapses to behavior – using open data, tools, and models from the Allen Institute in computational neuroscience”. https://www.cnsorg.org/cns-2021-tutorials#SA5 The Allen Institute recently released multiple free resources focusing on the structure and function of brain circuits, including data, associated analysis software, and models integrating the data to enable bio-realistic simulations. We will introduce several of these resources in a series of 1-hour sessions. The resources covered will include characterization of cell types and synapse types, 2-photon calcium imaging and Neuropixels electrophysiology in vivo, a visual behavior dataset, and bio-realistic models and modeling software. Wednesday, June 30, 2021 11:30 am – 11:45 am EST (8:30 am – 8:45 am PST) - Introduction 11:45 am – 12:45 pm EST (8:45 am – 9:45 am PST) - Synaptic Physiology (Luke Campagnola) 12:45 pm – 1:00 pm EST (9:45 am – 10:00 am PST) - Break 1:00 pm – 2:00 pm EST (10:00 am – 11:00 am PST) - Visual Coding 2-photon (Saskia de Vries) 2:00 pm – 3:00 pm EST (11:00 am – 12:00 pm PST) - Visual Coding Neuropixels (Josh Siegle) Thursday, July 1, 2021 11:30 am – 11:45 am EST (8:30 am – 8:45 am PST) - Introduction 11:45 am – 12:45 pm EST (8:45 am – 9:45 am PST) - PatchSeq (Nathan Gouwens) 12:45 pm – 1:00 pm EST (9:45 am – 10:00 am PST) - Break 1:00 pm – 2:00 pm EST (10:00 am – 11:00 am PST) - Visual Behavior (Alex Piet) 2:00 pm – 3:00 pm EST (11:00 am – 12:00 pm PST) - Bio-realistic model of the mouse primary visual cortex (Anton Arkhipov and Kael Dai) Please register for CNS*2021 and join us for the tutorials! https://www.cnsorg.org/cns-2021-quick Best wishes, Anton. Anton Arkhipov Associate Investigator T: 206.548.8414 E: antona(a)alleninstitute.org<mailto:antona@alleninstitute.org> [Text Description automatically generated] alleninstitute.org<https://alleninstitute.org> brain-map.org

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Last chance to register: TEX2021 - Bringing together Predictive Processes and Statistical Learning
by Yamil Vidal June 29, 2021

June 29, 2021

Last chance to register!! TEX2021 - Bringing together Predictive Processes and Statistical Learning A free online symposium organized by Yamil Vidal and Davide Crepaldi. We have few available spots left so do not wait until the last minute to register. Description: While the research communities studying Predictive Processes and Statistical Learning sprout from different traditions, they share a core interest in how our brains pick up on patterns in the environment. In this two-days symposium we will bring these communities closer by sharing talks by some of the leading researchers of these fields. When: 1st and 2nd of July (15:00 to 18:30, CET) Speakers: - Tristan Bekinschtein (Consciousness and Cognition Lab, Department of Psychology, University of Cambridge) - Lucia Melloni (Department of Neuroscience, Max Planck Institute for Empirical Aesthetics. Department of neurology, NYU Grossman School of Medicine) - Padraic Monaghan (Department of Psychology, Lancaster University) - Maria Chait (Ear Institute, University College London) - Floris de Lange (Donders Institute for Brain, Cognition, and Behaviour, Radboud University, Nijmegen) - Caspar Schwiedrzik (Neural Circuits and Cognition Lab, European Neuroscience Institute Goettingen. Perception and Plasticity Group, German Primate Center - Leibniz Institute for Primate Research) - Lori Holt (Department of Psychology, Carnegie Mellon University) - Nicola Molinaro (BCBL, Basque Center on Cognition, Brain and Language) Schedule and more info at the registration form: https://sissa-it.zoom.us/webinar/register/WN_nBOv5NWZQ36HSH7nyffazg We would be very happy to count you among the attendees. Please spread the word. Best regards, Yamil and Davide Dr. Yamil Vidal Cognitive Neuroscience Sector Scuola Internazionale Superiore di Studi Avanzati - SISSA via Bonomea, 265 34136 Trieste, ITALY

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Robustness, Adaptability and Critical Transitions in Living Systems satellite - Conference on Complex Systems 2021 Lyon, France
by Samir Suweis June 29, 2021

June 29, 2021

We are glad to announce the 4th hybrid (on site + virtual) edition of ReACT satellite <https://liphlab.github.io/REACT2021/> during the CCS 2021 <https://ccs2021.univ-lyon1.fr/> in Lyon, France - 25-29/10/2021 Confirmed invited speakers: Anna Levina (University of Tubingen) and Sergi Valverde (CSIC-Universitat Pompeu Fabra) Organizing commettee: Samir Suweis (UNIPD), Giorgio Nicoletti (UNIPD), Sandro Azaele (UNIPD), Jacopo Grilli (ICTP) Abstract submission open through EasyChair <https://easychair.org/account/signin_timeout?l=JRR3vhQlzxctciXkPU1pGc#>. Deadline 31 July 2021 All info are available also on the satellite website: https://liphlab.github.io/REACT2021/ <https://liphlab.github.io/REACT2021/> ***** After the success of the Satellite at ECCS 2014, CCS 2016, and CCS 2018, the ReACT Satellite: Robustness, Adaptability and Critical Transitions in Living Systems is back for a fourth edition at CCS 2021 in Lyon, France. We are very pleased to announce that the Satellite will be host in an hybrid format, welcoming participants both online and in person! The Satellite will last half a day and will take place during the main conference (25th - 29th October, 2021). The exact date and times will be announced soon. Living systems are characterized by the recurrent emergence of patterns: power-laws distributions, long-range correlations and structured self-organization in living matter are the norm, rather than the exception. All these features are also typical of systems poised near a critical point. The great lesson from Physics is that criticality can emerge as a collective behaviour in a many-body system with simple interactions and its characteristics depend only on few details, like the dimensionality or the symmetries. One of the most striking feature of living systems is that they are structured as evolving systems were interactions can turn-on or off, as well as strengthening and weakening, reconfiguring the system connectivity. Thus, by rearranging both the structural and functional topology, living interacting systems may demonstrate unique evolvability, scalability and adaptability properties. Among these systems, the brain is probably one of the most impressively complex and has received a considerable amount of attention in recent years, aided by the vast amount of experimental data available. The idea that the collective behavior of neurons might emerge from a self-organized critical state has been widely studied, from its fundamental mechanisms to its functional advantages, and it poses a fascinating question that is far from being answered. It is of crucial importance to make further steps in the understanding of the main properties that simultaneously confer to these systems high level of adaptability, robustness and optimality. If we can “learn” from evolution and unravel the basic principles then we would be able to both better manage/supervise these systems and also design more optimal and sustainable new systems. ***************** Samir Suweis www.liphlab.com Tel: +39 049 827 71 74

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[CFP] 2nd call for abstracts (+deadline extended to July 16th): Computational Cognition workshop (COMCO 2021)
by Juliane Schwab June 29, 2021

June 29, 2021

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[JOBS] PhD @ Italian Institute of Technology, Ferrara
by Alessandro D'Ausilio June 29, 2021

June 29, 2021

PHD PROGRAM in TRANSLATIONAL NEUROSCIENCES AND NEUROTECHNOLOGIES The Center for Translational Neurophysiology of Speech and Communication (CTNSC) @ Italian Institute of Technology (IIT), is opening 3 PhD positions starting in November 1st, 2021. Research areas: - Improving performance and biocompatibility of electrode arrays for brain-computer interfaces - Organic neuroelectronics for multimodal recordings and stimulation of the brain in vivo - Hardware and software development for innovative exploration of brain signals - Machine learning applications to multimodal brain and speech signals - Investigation of sensorimotor functions in animal models - Cortical recordings in human patients during awake Neurosurgery - Human non-invasive neurophysiology of speech and sensorimotor communication Who: chemists, physicists, materials scientists, computer scientists, biomedical/electrical engineers, biologists, biotechnologist, medical doctors and experimental psychologists eager to work in an international and multidisciplinary team. Where: The CTNSC (https://www.iit.it/it/ctnsc-unife <https://www.iit.it/centers/ctnsc-unife>) is hosted by the University of Ferrara (UNIFE) in a prestigious historical building in the city center. Ferrara is a well connected renaissance city (30-min to Bologna, 40-min to Padua, 60-min to Venice; 2 nearby international airports), bustling with students (https://whc.unesco.org/en/list/733 <https://whc.unesco.org/en/list/733>). General INFO: http://www.unife.it/studenti/dottorato/it/corsi/riforma/neuroscience <http://www.unife.it/studenti/dottorato/it/corsi/riforma/neuroscience> Application INFO: http://www.unife.it/studenti/dottorato/concorsi/selection <http://www.unife.it/studenti/dottorato/concorsi/selection> DEADLINE: July 23rd, 2021

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Tutorial on NEURON and NetPyNE at CNS*2021
by McDougal, Robert June 28, 2021

June 28, 2021

(Apologies for cross-posts.) Interested in learning how to build biophysically detailed neuronal models with NEURON and NetPyNE? Join us for a tutorial at CNS*2021 on Saturday, July 3rd starting at 10am EDT: Time (New York City / EDT) Presenter Subject 10:00 - 10:30 Bill Lytton Overview: implementing the conceptual model 10:30 - 11:50 Robert McDougal NEURON scripting basics 11:50 - 12:00 coffee break 12:00 - 1:00 Adam Newton Reaction-Diffusion 1:00 - 1:30 lunch break 1:30 - 2:50 Salvador Dura-Bernal NetPyNE GUI-based tutorials 2:50 - 3:00 coffee break 3:00 - 4:00 Salvador Dura-Bernal NetPyNE programming tutorial For more information, see: https://neuron.yale.edu/neuron/courses/2021-cns-neuron-netpyne-tutorial Register for CNS*2021 to attend; see https://www.cnsorg.org/cns-2021-registration-fees

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