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EPSRC funded PhD in Computational/Mathematical Neuroscience (funded for UK students)
by James Rankin Dec. 21, 2017

Dec. 21, 2017

*3 EPSRC funded PhD positions in Computational & Mathematical Neuroscience* UK students (or students who have spent last 3 years in UK) fully funded (fees and stipend) EU students partially funded (fees but no stipend) International students not eligible *Application deadline: 10th January 2018* Starting: September 2018 The studentships will provide funding for a stipend which is currently £14,553 per annum for 2017-2018. It will provide research costs and UK/EU tuition fees at Research Council UK rates for 42 months (3.5 years) for full-time students, pro rata for part-time students. * Cortical network models to understand differential input response properties during active and silent states* Supervisors: Dr James Rankin and Dr Mick Craig (Medical School, Exeter) http://www.exeter.ac.uk/studying/funding/award/?id=2903 * Determination of parameter dependencies across diverse populations of neuronal and excitable cells* Supervisors: Dr James Rankin and Dr Joel Tabak (Medical School, Exeter) http://www.exeter.ac.uk/studying/funding/award/?id=2932 *The neural circuitry mediating multisensory integration in Platynereis larvae* Supervisors: Dr James Rankin and Prof Gáspár Jékely (Living Systems Institute, Exeter) http://www.exeter.ac.uk/studying/funding/award/?id=2901 Apply through links above or contact pgrenquiries(a)exeter.ac.uk or j.a.rankin(a)exeter.ac.uk directly with any questions. -- http://emps.exeter.ac.uk/mathematics/staff/jar226

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Groningen Spring School on Cognitive Modeling 2018
by Jelmer Borst Dec. 20, 2017

Dec. 20, 2017

Third Groningen Spring School on Cognitive Modeling – ACT-R, Nengo, PRIMs, & Accumulator Models – Date: April 9-13, 2018 Location: Groningen, the Netherlands Fee: € 250 (late fee after January 31 will be € 300) More information and registration: www.cognitive-modeling.com/springschool <http://www.cognitive-modeling.com/springschool> We are happy to announce the third Groningen Spring School on Cognitive Modeling (April 9-13, 2018). As in previous years, it will cover four different modeling paradigms: ACT-R, Nengo, PRIMs, and Accumulator models. It thereby offers a unique opportunity to learn the relative strengths and weaknesses of these approaches. See the attached flyer for more information about the paradigms. Each day will consist of four theory lectures, one on each modeling paradigm. Each paradigm also includes hands-on assignments. Although students are free to choose the number of lectures they attend, we recommend students to sign up for lectures on two of the paradigms, and complete the tutorial units for one of the paradigms. At the end of each day there will be a plenary research talk, to show how these different approaches to modeling are applied. The Spring School will be concluded with a keynote lecture and a conference dinner. This year we also offer the opportunity for project students to attend. The idea is that you have attended the spring school in an earlier year and now come back in the week of the spring school to work on your own modeling project under our supervision. Admission is limited, so register soon! We are looking forward to seeing you in Groningen! Niels Taatgen Jelmer Borst Marieke van Vugt Terry Stewart & Katja Mehlhorn

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Postdoctoral Swartz Fellowship Positions in Theoretical and Computational Neuroscience at Yale University
by Murray, John Dec. 20, 2017

Dec. 20, 2017

The Swartz Center in Theoretical Neurobiology at Yale University invites applications for up to two postdoctoral positions in Theoretical and Computational Neuroscience, with start date mid or late 2018. Competitive candidates include those with a strong quantitative background who wish to gain neuroscience research experience. We especially encourage candidates with an interest in collaborating directly with experimental neuroscientists. The candidates will be expected to perform theoretical/computational studies relevant to one or more laboratories of the Yale Swartz Center (https://medicine.yale.edu/neuroscience/swartz/corelabs.aspx) and will be encouraged to participate in an expanding quantitative biology environment. Candidates must hold a Ph.D. or equivalent degree. Please send a Curriculum Vitae, selected reprints, names of those whom we can contact for a reference, and a statement of research plans including the laboratories of interest. All application materials should be sent electronically to the following e-mail address: john.murray at yale.edu <mailto:john.murray at yale.edu>. Applications will be reviewed as they are received, but priority will be given to those received on or before January 20th 2018. For any questions, please contact John Murray <mailto:john.murray at yale.edu>. Yale University is an affirmative action/equal opportunity employer. Yale values diversity in its faculty, students, and staff and especially welcomes applications from women and underrepresented minorities. http://neurojobs.sfn.org/jobs/10584092/ John D. Murray ----------------------------------------------- Assistant Professor Department of Psychiatry Yale University School of Medicine murraylab.yale.edu<http://murraylab.yale.edu/> -----------------------------------------------

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Assoc Prof and lectureships in Data Science and Predictive Modelling
by Bruce Graham Dec. 19, 2017

Dec. 19, 2017

Dear all, We have 3 new posts at the University of Stirling in Scotland (in addition to 3 posts in Cyber-security, advertised recently and still open for applications). The new posts are an Associate Professor and 2 lecturers in Data Science and Predictive Modelling and are part of an exciting new University of Stirling initiative to strengthen our Computing Science and Mathematics capabilities and collaborations between our Data Science and Biological Modelling research groups and strengthen our related research and teaching. Mathematicians, as well as computer scientists or related disciplines, are particularly encouraged to apply. Computational neuroscience, machine learning, neural networks and other topics of interest to this mailing list fall within the remit of these posts. For complete details and how to apply, please see: https://www.stir.ac.uk/about/jobs/ Closing date is 21st January 2018. For informal enquiries, please email me directly. Best regards, Bruce Graham -- Prof. Bruce Graham (b.graham(a)cs.stir.ac.uk) Professor of Computing Science and Research Director Computing Science and Mathematics Faculty of Natural Sciences University of Stirling Stirling FK9 4LA phone: +44 1786 467 432 fax: +44 1786 464 551 Coauthor of "Principles of Computational Modelling in Neuroscience", CUP 2011. Editorial Board of Journal of Biological Dynamics.

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Post-doctoral research associate post in Computational Neuroscience, and PhD studentship in Computational Neuroimaging available
by Wong-Lin, Kongfatt Dec. 19, 2017

Dec. 19, 2017

1. A BBSRC funded post-doctoral research associate post in Computational Neuroscience is available at Ulster University, UK. The research project, in collaboration with The University of Oxford, is focused on analyzing and modelling serotonin and related brain systems. For more info, please see: <https://lnkd.in/eDsv3_i> https://atsv7.wcn.co.uk/search_engine/jobs.cgi?SID=amNvZGU9MTcwMzk4MyZ2dF90… 2. A fully funded Ph.D. studentship in Computational Neuroimaging of Dementia is available at Ulster University. The research project involves close collaboration with academics, clinicians and industrial partners. For more info, please see: <https://lnkd.in/e3scQ_H> https://www.ulster.ac.uk/doctoralcollege/find-a-phd/238180 Please contact me for more information if interested in the post/studentship. Best KongFatt Wong-Lin -------------------------------- E-mail: k.wong-lin(a)ulster.ac.uk https://www.ulster.ac.uk/staff/k-wong-lin This email and any attachments are confidential and intended solely for the use of the addressee and may contain information which is covered by legal, professional or other privilege. If you have received this email in error please notify the system manager at postmaster(a)ulster.ac.uk and delete this email immediately. Any views or opinions expressed are solely those of the author and do not necessarily represent those of Ulster University. The University's computer systems may be monitored and communications carried out on them may be recorded to secure the effective operation of the system and for other lawful purposes. Ulster University does not guarantee that this email or any attachments are free from viruses or 100% secure. Unless expressly stated in the body of a separate attachment, the text of email is not intended to form a binding contract. Correspondence to and from the University may be subject to requests for disclosure by 3rd parties under relevant legislation. The Ulster University was founded by Royal Charter in 1984 and is registered with company number RC000726 and VAT registered number GB672390524.The primary contact address for Ulster University in Northern Ireland is Cromore Road, Coleraine, Co. Londonderry BT52 1SA

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Python Exercises and Online textbook: Neuronal Dynamics
by Wulfram Gerstner Dec. 19, 2017

Dec. 19, 2017

We have now finished a series of Python exercises for the book 'Neuronal Dynamics - from single neurons to populations and Models of Cognition' by Gerstner-Kistler-Naud-Paninski (Cambridge Univ. Press) To go directly to the exercises, click here http://neuronaldynamics.epfl.ch/exercises.html An html online version of the book for students (as well as some teaching material for lecturers) is available here: http://neuronaldynamics.epfl.ch <http://neuronaldynamics.epfl.ch/index.html> The pdf of the e-book and printed versions of the book are available via Amazon or Cambridge Univ. Press. The series of exercises has been tested in classes at the EPFL, but we thought that they might be also useful for students at other places, best regards Wulfram Gerstner, Alex Seeholzer, Marco Lehmann EPFL, Switzerland

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Open position: Coordinator Scientific Computing at Research Center Juelich, Germany
by Martina Reske Dec. 19, 2017

Dec. 19, 2017

Dear Comp-Neuro community The Institute of Neuroscience and Medicine (INM) investigates the structure and function of the human brain on different spatial and temporal scales within the research program “Decoding the Human Brain”. The brain’s high complexity and plasticity over the lifespan of an individual, as well as changes during neuropsychiatric disorders, requires the use of innovative imaging methods and supercomputing technology. Basic neuroscience research heavily relies on modeling and simulation, which are necessary to approach the brain’s immense complexity, manage the huge amount of resulting data, and develop reliable control techniques. Acquired knowledge allows for the translation of basic findings into clinical applications to better understand neurological and psychiatric disorders, to refine diagnostic processes, and to develop therapy strategies – crucial tasks we have to face in ageing societies. The department INM-6, Computational and Systems Neuroscience, develops mathematical models of neuronal dynamics and function. We are active in neuromorphic computing and develop simulation technologies and analysis tools. We are looking to recruit a Coordinator Scientific Computing Your Job: * Design and continuous advancement of a roadmap for scientific computing with regard to hard- and software * Designing a cloud infrastructure and digitized workflows in theoretical neuroscience * Studying international developments in hard- and software in the fields of simulation and data science in neuroscience * Planning, purchasing, set-up and management of UNIX, Linux, Mac OS and Windows systems, communication systems and software * Support of institute’s databases and online tools (webdav, git, wordpress, website); user management * Further development of simulation and analysis codes with regard to system near aspects * Measurement of energy-to-solution and time-to-solution of simulations and analysis codes for scientific studies * Direct support of scientists * Participation in working group leaders’ meeting * Participation in relevant IT committees at Forschungszentrum Juelich * Participation in educating staff in HPC aspects Your Profile: * Completed study of informatics, mathematics or physics * Substantial expertise in C, C++ and Python * Substantial knowledge of UNIX, Windows and Mac OS * Experience with administration of HPC clusters, file, web and print servers as well as with parallel computing (ideally in neuroscience) * Beneficial: Basic knowledge of neuroscience concepts * Ability and willingness to work independently and proactively * Confident appearance and ability to work cooperatively in an interdisciplinary environment * Good interpersonal and communication skills * Structured and systematic working style * Fluent in English (spoken and written) Our Offer: * International, interdisciplinary working environment on an attractive research campus, ideally situated between the cities of Cologne, Düsseldorf, and Aachen * A comprehensive further training Programme * Flexible working hours and various opportunities to reconcile work and family life * Limited for 2 years with possible longer-term prospects * Salary and social benefits in conformity with the provisions of the Collective Agreement for the Civil Service (TVöD) Forschungszentrum Jülich aims to employ more women in this area and therefore particulary welcomes applications from women. We also welcome applications from disabled persons. We look forward to receiving your application, preferably online<https://www.hrecruiting.de/obf2/bewerbermanagement.php?kunden_nr=t5ChjatkIf…> via our online recruitment system on our career site, quoting the reference number 2017-321. Contact Human Resource Development and Recruiting Kristin Lux Tel.:+49 2461 61 9700 -- Dr. Martina Reske Scientific Coordinator Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Institute for Advanced Simulation (IAS-6) Theoretical Neuroscience Jülich Research Centre and JARA Jülich, Germany Work +49.2461.611916 Work Cell +49.151.26156918 Fax +49.2461.619460 www.csn.fz-juelich.de<http://www.csn.fz-juelich.de> ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

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Operations Research in Neuroscience, Special Issue of Annals of Operations Research
by Ruben A. Tikidji-Hamburyan Dec. 19, 2017

Dec. 19, 2017

Dear colleagues, [apologies for any crossposting] I would like to bring your attention to the special issue on applications of *Operations Research in Neuroscience* recently published in* Annals of Operations Research* Volume *258* Number 1 (Springer). ISSN: 0254-5330 (Print) 1572-9338 (Online) The volume is available online: https://link.springer.com/journal/10479/258/1?wt_mc=alerts.TOCjournals Please find the table of contents below. After a positive response from the journal and the publisher, we are planning to announce another special issue (SI) on the same topic in the same journal early next year. Please let me know if you are interested in contributing to this SI. Best Regards, Ruben ---- Ruben Tikidji-Hamburayn, Ph.D. =================================================================================== Preface *Operations research in neuroscience* Erik Kropat, Ruben A. Tikidji-Hamburyan… Pages 1-4 OR in Neuroscience *A bi-objective network design approach for discovering functional modules linking Golgi apparatus fragmentation and neuronal death* Eduardo Álvarez-Miranda, Hesso Farhan, Martin Luipersbeck… Pages 5-30 OR in Neuroscience *Voxel-MARS: a method for early detection of Alzheimer’s disease by classification of structural brain MRI* Alper Çevik, Gerhard-Wilhelm Weber, B. Murat Eyüboğlu… Pages 31-57 OR in Neuroscience *A semi-supervised inattention detection method using biological signal* Yerim Choi, Jonghun Park, Dongmin Shin Pages 59-78 OriginalPaper *Structure preserving integration and model order reduction of skew-gradient reaction–diffusion systems* Bülent Karasözen, Tuğba Küçükseyhan, Murat Uzunca Pages 79-106 OR in Neuroscience *Totally model-free actor-critic recurrent neural-network reinforcement learning in non-Markovian domains* Eiji Mizutani, Stuart Dreyfus Pages 107-131 OR in Neuroscience *A comparative stationarity analysis of EEG signals* V. Rasoulzadeh, E. C. Erkus, T. A. Yogurt, I. Ulusoy… Pages 133-157 OR in Neuroscience *Anti-periodic solutions for state-dependent impulsive recurrent neural networks with time-varying and continuously distributed delays* Mustafa Şaylı, Enes Yılmaz Pages 159-185

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Postdoc position in Bristol
by Cian O'Donnell Dec. 18, 2017

Dec. 18, 2017

A postdoctoral position is available to work on statistical analysis and computational modelling of large-scale two-photon imaging data of neural population activity from rodent neocortex. This work is part of a Simons Foundation-funded project that seeks to compare the fidelity and stability of neural coding of sensory stimuli between wild-type mice and Fragile-X Syndrome mouse models. The project is a collaboration between the computational neuroscience group of Cian O’Donnell at University of Bristol (http://seis.bris.ac.uk/~co15268) where you will be based, and the experimental neuroscience group of Carlos Portera-Cailliau at University of California, Los Angeles (https://porteralab.neurology.ucla.edu) You will be part of the growing Bristol Computational Neuroscience Unit (http://www.bris.ac.uk/engineering/research/computational-neuroscience; faculty Rui Costa, Conor Houghton, Nathan Lepora, Naoki Masuda, Rosalyn Moran, and Cian O'Donnell). You should ideally have a PhD in Computational Neuroscience or Machine Learning/Statistics, but we will also accept applications from candidates with PhDs in related disciplines such as Neuroscience, Physics, Mathematics, or Engineering. This post is offered on a full time, open-ended contract with funding for up to 18 months in the first instance. You should be able to start on or before April 2018. Please email Cian O’Donnell (cian.odonnell(a)bristol.ac.uk<mailto:cian.odonnell@bristol.ac.uk>) for informal enquires. More application details here: http://www.jobs.ac.uk/job/BGN179/research-associate-senior-research-associa….

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Open letter: A commitment to open source in neuroscience
by Andrew Davison Dec. 18, 2017

Dec. 18, 2017

Dear colleagues, We would like to point the members of this list to an initiative which resulted from a workshop on collaborative model development <https://www.janelia.org/you-janelia/conferences/collaborative-development-d…> at Janelia Research Campus. A number of participants agreed to sign an open letter committing to releasing as open source all the software they develop for data analysis and modelling in their publications (whether or not the article is specifically about the software). The letter and current signatories can be found here: http://opensourceforneuroscience.org/ <http://opensourceforneuroscience.org/> A NeuroView article describing this initiative has just been published in Neuron: A Commitment to Open Source in Neuroscience <http://www.cell.com/neuron/fulltext/S0896-6273(17)30981-9>. While many on this list are already sold on the idea of making their own code publicly available, there is another significant statement in the open letter: "If and when asked to serve as peer-reviewers, we will henceforth ask authors about the availability of any code they have developed for data analysis and modelling which is essential to reproducing the results of their paper and require that this be shared publicly upon acceptance." We hope that this public commitment will make it clear to the wider neuroscience community that trying to publish work on the assumption that they will not have to release their code will become more and more difficult, and that the sooner they plan to make it available the better for them and for the wider field. Regards, Padraig Gleeson Andrew P. Davison R. Angus Silver Giorgio A. Ascoli

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