June 2025 - Comp-neuro - lists.cnsorg.org

Call for applications: Computational approaches in systems neurophysiology (Rome, Italy – June 23-25, 2025)
by Andrea d'Avella March 30, 2026

March 30, 2026

Applications are open for the XXVIII *School of Physiology and Biophysics* organized by the *Italian Physiological Society *(SIF), which will be held from *June 23 to June 25, 2025*, in *Rome, Italy*. Enquires: sif.sfb.2025(a)gmail.com Online application: https://sfb2025.azuleon.org/ Application deadline: *May 9, 2025* The XXVIII School of Physiology and Biophysics of the Italian Physiological Society is a three-day (one full day and two half days) introductory course designed to provide participants with both theoretical and technical-practical knowledge of computational approaches in systems neurophysiology. The school covers a wide range of topics, from the analysis of behavioral and electrophysiological data to the modeling of brain activity at the cellular, whole-brain, and behavioral levels. Participants will learn how computational methods can be applied to study motor control and sensory systems by integrating experimental data with advanced analytical tools. The curriculum includes psychophysical methods, analyses of kinematic and muscle synergies, eye movement analyses, computational methods of sensory stimulation, neural network models, and quantitative neuroimaging techniques. The course combines lectures with hands-on tutorials, where attendees will analyze sample experimental data using analysis software such as MATLAB and R. Best regards, Andrea d’Avella and the Organizing Committee -- Andrea d'Avella, Ph.D. Professor of Physiology Department of Biology University of Rome Tor Vergata, Rome, Italy Team leader Laboratory of Neuromotor Physiology IRCCS Fondazione Santa Lucia, Rome, Italy -- <http://www.hsantalucia.it/5x1000-sostieni-la-nostra-ricerca> Le informazioni contenute in questo messaggio e negli eventuali allegati sono riservate e confidenziali. Il loro utilizzo è consentito esclusivamente al destinatario del messaggio, per le finalità indicate nel messaggio stesso. Qualora Lei non fosse la persona a cui il presente messaggio destinato, La invitiamo ad eliminarlo dal Suo sistema ed a distruggere le varie copie o stampe, dandocene gentilmente comunicazione. Ogni utilizzo improprio e'contrario ai principi del D.Lgs. 196/2003 e del Regolamento UE 2016/679. The information contained in this message as well as the attached file(s) is confidential/privileged and is only intended for the person to whom it is addressed. If the reader of this message is not the intended recipient or the employee or agent responsible for delivering the message to the intended recipient, or you have received this communication in error, please be aware that any dissemination, distribution or duplication is strictly prohibited, and can be illegal. Please notify us immediately and delete all copies from your mailbox and other archives. *Rispetta l'ambiente: se non ti è necessario, non stampare questo messaggio - Please consider the environment before printing this email.*

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Late-breaking poster abstract submission for the 32nd Annual Computational Neuroscience Meeting ends on June 15
by Rubchinsky, Leonid L March 10, 2026

March 10, 2026

Dear Colleagues, We would like to remind that the late-breaking poster abstracts submission at CNS*2023 ends on June 15. CNS*2023, 32nd Annual Computational Neuroscience Meeting, will be in Leipzig, Germany, on July 15-19, 2023. The information about the meeting and abstract submission can be found here: Registration: https://ocns.memberclicks.net/cns-2023-registration Abstract submission: https://www.cnsorg.org/cns-2023-abstract-submission CNS*2023 information: https://www.cnsorg.org/cns-2023 With kind regards, Leonid Rubchinsky OCNS Vice President *********************** Leonid Rubchinsky, PhD Professor Department of Mathematical Sciences, Indiana University Purdue University Indianapolis Stark Neurosciences Research Institute, Indiana University School of Medicine 402 N. Blackford St Indianapolis, IN 46202-3216 lrubchin(a)iupui.edu http://www.math.iupui.edu/~lrubchin ***********************

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Postdoctoral Research Fellow in Biocomputation at the University of Hertfordshire, UK
by Volker Steuber Oct. 17, 2025

Oct. 17, 2025

Post Title: Research Fellow in Biocomputation SBU/Department: School of Physics, Engineering and Computer Science ________________________________ FTE: 1 FTE (working 37 hours per week) Duration of Contract: Fixed term Contract (3 years) Salary: UH7 £36,333 pa with potential to progress to £43,155 pa on achieving designated skills and experience Annual Leave: 35 days plus standard public holidays and an additional 4 days including the closure of our office between Christmas and New Year Location: College Lane Campus, Hatfield, UK Closing Date: 14th June 2023 Interview Date: To be confirmed Reference Number: 048016 Date advert placed: 17th May 2023 Main duties and responsibilities We are seeking a full-time Research Fellow to join the Biocomputation Research Group in the School of Physics, Engineering and Computer Science at the University of Hertfordshire to conduct high-quality research in Computational Neuroscience. The successful candidate’s research will involve synergistic collaborations with a multidisciplinary team to investigate brain processes using methodologies such as computational modelling, machine learning and AI. Research to be conducted could, e.g., comprise modelling brain circuits like the olfactory bulb or the cerebellum and simulating and analysing their function. Additional impact could arise in machine learning, AI, data science, neurorobotics and neuromorphic computing. The successful candidate will be expected to establish a programme of research in collaboration with colleagues at UH and partner organisations in the UK and abroad. Leading the preparation and publication of research manuscripts is a key aspect of the role. Contributions to the preparation of research proposals and applications for funding to external bodies, such as the European Commission and the UK Research and Innovation (UKRI) are expected. The postholder will create opportunities to maximise research activities, capturing relevant evidence to support impact and engaging with external partners and stakeholders. Skill and experience required * Strong theoretical, computational and programming background in computational modelling and/or machine learning and/or data science and/or AI. * Background and expertise in computational neuroscience (e.g. spiking neural networks, brain function and anatomy, analysis of brain data). * Demonstrated experience to conduct independent research in computational neuroscience or a related field, e.g., through published research papers or monographs. * Applicants must be proficient in both written and oral English * The applicants must be able to work independently and in a structured manner and demonstrate good collaborative skills. Qualifications required • An undergraduate honours degree (or equivalent) in Computer Science, Physics, Mathematics, Neuroscience, or a related discipline and a PhD (or expectation that one will soon be awarded) in a relevant discipline. An appointment to this role may require an Academic Technology Approval Scheme (ATAS) certificate. Contact Details/Informal Enquiries: Professor Volker Steuber, v.steuber(a)herts.ac.uk Professor Michael Schmuker, m.schmuker(a)herts.ac.uk Apply through: https://www.jobs.herts.ac.uk/go/048016 Our vision is to transform lives: UH is committed to Equality, Diversity and Inclusion and building a diverse community. We welcome applications from suitably qualified and eligible candidates regardless of their protected characteristics and recognise there are different ways applicants may achieve the criteria in this document. We offer a range of employee benefits including generous annual leave, flexible location opportunities within the UK, discounted Sports Village memberships and free Active Staff sessions, personal and professional development and family-friendly policies. Volker Steuber Professor of Computational Neuroscience Biocomputation Research Group School of Physics, Engineering and Computer Science University of Hertfordshire College Lane, Hatfield, AL10 9AB, UK biocomputation.herts.ac.uk<http://biocomputation.herts.ac.uk>

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Abstract submission open for the UK Neural Computation meeting July 9-11, Imperial College London
by Mark Humphries Oct. 13, 2025

Oct. 13, 2025

Abstract submission is now open for the UK Neural Computation meeting 2025 at Imperial College on 9-11th July 2025. Submit here: https://forms.gle/kg5xaSfBX3sN7tUN9 Deadline of 12th May 2025 4 submitted abstracts will be selected for main meeting talks. Please spread the word! Conference information: https://neuralcomputation.uk/ Sponsors: ARIA Scalable Neural Interfaces program<https://www.aria.org.uk/opportunity-spaces/scalable-neural-interfaces> Francis Crick Institute<https://www.crick.ac.uk/> Organisers: Danyal Akarca (Imperial) Dan Goodman (Imperial) Mark Humphries (Nottingham) Professor Mark Humphries | Professor of Computational Neuroscience Lab: humphries-lab.org<https://www.humphries-lab.org/> Connect: Bluesky<https://bsky.app/profile/markdhumphries.bsky.social> / LinkedIn<https://www.linkedin.com/in/mark-humphries-65a460212/> / X<https://x.com/markdhumphries> Essays on the brain and science: drmdhumphries.medium.com<https://drmdhumphries.medium.com/> Book: "The Spike: An Epic Journey Through the Brain in 2.1 Seconds" (Princeton UP) in hardback<https://press.princeton.edu/books/hardcover/9780691195889/the-spike?_gl=1*h…..>, paperback<https://press.princeton.edu/books/paperback/9780691241487/the-spike>, ebook<https://press.princeton.edu/books/ebook/9780691213514/the-spike-0?_gl=1*1uf…..> & audiobook<https://press.princeton.edu/books/audio/9780691224091/the-spike?_gl=1*37xz7…..> <https://press.princeton.edu/books/audio/9780691224091/the-spike?_gl=1*37xz7…..> read by Anand Jagatia This message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please contact the sender and delete the email and attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham. Email communications with the University of Nottingham may be monitored where permitted by law.

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CNS*2025 workshop "NeuroXAI: Explainable AI for Understanding Biological Brains"
by Jie Mei June 30, 2025

June 30, 2025

Dear colleagues, We are pleased to invite you to the upcoming CNS*2025 workshop "NeuroXAI: Explainable AI for Understanding Biological Brains", to be held on July 8th, 2025 (9am to 12:30pm) in Florence, Italy. This workshop provides a unique platform to bring together neuroscience and AI researchers working on explainable AI (XAI) for neuroscience (NeuroXAI) and other relevant areas of research. Topics of interest include machine learning and data mining models for neuroscience, XAI methods to address challenges in neuroscience data analysis and modeling, neuro-inspired models, and topics of high societal relevance (e.g., open science practices and reproducibility). Confirmed speakers and talks: Parsimonious and Tractable RNNs for Dynamical Systems Reconstruction Daniel Durstewitz (Central Institute of Mental Health Mannheim and Interdisciplinary Center for Scientific Computing at Heidelberg University) Leveraging Latent Space Models for Biomarker Discovery in Deep Brain Stimulation Sankar Alagapan (Georgia Institute of Technology) Explainable AI for neuroimaging in psychiatry: evaluation and cellular-to-network investigation of E/I imbalance in autism Trang-Anh Nghiem (Stanford University/Hertie Institute for AI in Brain Health) Neural dynamics of reversal learning in the prefrontal cortex and recurrent neural networks Christopher Kim (Howard University) What can artificial neural networks learn from biological neuromodulatory systems? Srikanth Ramaswamy (Newcastle University/MIT) For more details, please visit https://cns2025florence.sched.com/event/1z9Mt/neuroxai-explainable-ai-for-u…. We look forward to having you join us in Florence! Yours, Jie Mei, Nina Hubig, Subham Dey and Claudia Plant Best regards Jie Mei Assistant Professor of Computational Neuroscience [Ein Bild, das Schwarz, Dunkelheit enthält. Automatisch generierte Beschreibung] Altenberger Straße 66c Science Park 4 | OG 2 4040 Linz | Austria ATU79114879 www.it-u.at<https://www.it-u.at/> +43 676 / 851307 254 jie.<mailto:vorname.nachname@it-u.at>mei(a)it-u.at<mailto:vorname.nachname@it-u.at> Unsere Datenschutzerklärung finden Sie unter https://it-u.at/en/privacy/. Der Inhalt dieser E-Mail ist vertraulich und kann rechtlich besonders geschützte Informationen beinhalten. Wenn Sie nicht der beabsichtigte Empfänger sind, dürfen Sie diese E-Mail oder die angeschlossenen Dateien weder bearbeiten, verwenden, weitergeben noch reproduzieren. Sollten Sie nicht der vorgesehene Empfänger sein, ersuchen wir Sie höflich, sich sofort mit uns ins Einvernehmen zu setzen und die E-Mail und sämtliche angeschlossene Dateien zu löschen. You can find our Privacy Policy here https://it-u.at/en/privacy/. The content of this email is confidential and may also contain legally privileged information. If you are not the intended recipient you may not process, use, transmit or reproduce this email or any enclosed attachments. If you have received this email by mistake, please notify the sender immediately and delete this email and any enclosed attachments from your system.

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CNS*2025 Tutorial "Building Intuitive and Efficient Biophysical Models with Jaxley and DendroTweaks - Schedule
by Spiros Chavlis June 30, 2025

June 30, 2025

Dear friends and colleagues, We are pleased to announce that this Saturday, July 5, in Florence, Italy, we will be hosting a full-day tutorial at CNS*2025 on "Building Intuitive and Efficient Biophysical Models with Jaxley and DendroTweaks". This tutorial will introduce two new software tools, Jaxley and DendroTweaks, which provide complementary approaches for developing detailed biophysical models. The tutorial will feature interactive, hands-on sessions using Jupyter notebooks, where participants will learn how to: - Build neuronal models with realistic dendritic morphology and ion channels - Understand the role of each model parameter through interactive visualizations - Refine data and standardize models - Speed up simulations using a GPU-based simulator - Optimize model parameters automatically using gradient-based approaches - Train networks of biologically realistic neurons to solve complex tasks, bridging the gap between neuroscience and AI This tutorial is open to researchers and students of all levels interested in computational neuroscience. No prior experience with biophysical modeling is required. A basic familiarity with Python is helpful but not necessary. Software tools: Jaxley: https://jaxley.readthedocs.io/ DendroTweaks: https://dendrotweaks.dendrites.gr/ Speakers and organizers: Spyridon Chavlis, Michael Deistler, Kyra L Kadhim, Roman Makarov Schedule: 09:00 – 09:15 Welcome and general introduction 09:15 – 10:10 Building single-neuron models with DendroTweaks 10:10 – 10:40 Coffee break 10:40 – 12:00 Exploring models in DendroTweaks GUI 12:00 – 13:00 Lunch break 13:00 – 14:30 Building single-cell and network models in Jaxley 14:30 – 15:00 Coffee break 15:00 – 16:00 Optimizing biophysical models with Jaxley See more here: https://cns2025florence.sched.com/event/25kVa/building-intuitive-and-effici… We are looking forward to seeing you in Florence. On behalf of the organizers, Spiros Chavlis

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Workshop online streaming - "Collective dynamics and information processing in neural systems" | Venice 30/06 - 02/07
by Fabrizio Lombardi June 28, 2025

June 28, 2025

Dear All, We invite you to join us online for the coming workshop "Collective Dynamics and Information Processing in Neural Systems <https://liphlab.github.io/NeuroStatPhys_Satellite/>". The workshop will take place* in Venice, Italy, on 30 June - 02 July 2025* at the European Center for Living Technology (ECLT). Here the zoom link https://unipd.zoom.us/j/89751980137 *No registration is required.* *--------------------------------------------------------------------------------------------------------* *About the workshop* A longstanding question is how populations of neurons cooperate and coordinate to perform function and maintain an “optimal” state for information processing and computation. While electrophysiological recordings in behaving animals have provided considerable information about what the firing patterns of single neurons encode in isolation, it remains largely a mystery how populations of neurons interact to perform brain functions. How do emergent collective behaviors, such as neuronal oscillations, waves, or avalanches, support function? And what is the nature of the brain’s internal state and how that affects function? With the aim of further strengthening the connection between neuroscience and statistical physics, this satellite workshop is intended to gather neuroscientists, physicists, and mathematicians who work on collective dynamics, cognition and behavior, and provide an interdisciplinary stage to discuss recent theoretical/computational and experimental advances on the role of neural ensembles for brain function. The workshop will be carefully planned to foster discussion and interaction between attendees, and to encourage the establishment of professional relationships. Particular emphasis will be given to participation of young PI’s and scholars and to the diversity in the pool of participants, with a good balance between physicists, mathematicians, theoretical and experimental neuroscientists. *Topics that will be covered in this workshop include (but are not limited to):* - Dynamics of neuronal ensembles: theory and models - Encoding and decoding of neural ensembles - Learning and memory - Control theory and behavior - Statistical inference - Modeling of brain dynamics in health and disease - Criticality in neural systems *Invited speakers:* - Stefano Fusi (Columbia University) - Gašper Tkačik (IST Austria) - Dietmar Plenz (NIH) - Gianluigi Mongillo (Institut de la Vision) - Raffaella Burioni (University of Parma) - Henrik J. Jensen (Imperial College) - Francesca Mastrogiuseppe (Champalimaud Foundation) - Gaia Tavoni (Washington University in St Louis) - Luca Mazzucato (University of Oregon) - Carlotta Martelli (University Mainz) - Athena Akrami (University College London) - Federico Stella (Donders Institute) - Johannes Felsenberg (FMI Basel) - Ana Paula Millán Vidal (University of Granada) - Michele Allegra (University of Padova) - Nima Dehghani (MIT) - Olivier Marre (Institut de la Vision) - Brice Bathellier (Institut de l'Audition) For further information please check the workshop website https://liphlab.github.io/NeuroStatPhys_Satellite/ The organizing committee, Fabrizio Lombardi, Lucilla de Arcangelis, Serena Di Santo, Samir Suweis, Ulisse Ferrari, Elisa Tentori, Achille Giacometti, Guido Caldarelli

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Two Postdoctoral Research Positions at Ghent University
by Clay Holroyd June 27, 2025

June 27, 2025

The Learning and Cognitive Control Laboratory at Ghent University (Belgium) is recruiting two highly motivated postdoctoral fellows to apply a control-theoretic approach to investigate the neurocognitive mechanisms of cognitive effort ( https://doi.org/10.1037/rev0000467 ). The positions are funded by a European Research Council Advanced Grant ( https://www.ugent.be/en/news-events/six-erc-advanced-grants.htm ), are for 3 years with an opportunity to renew, and are available to start January 2026. Position 1: The successful candidate will apply linear control theory to investigate the energy demands of existing artificial neural network models of working memory, task switching, and brain computer interface tasks. A Ph.D. and background in computational modeling, engineering or a related discipline is required; expertise with linear control theory and dynamical systems theory are preferred but not necessary. Position 2: The successful candidate will train recurrent neural networks to learn the generative structure of existing behavioral, EEG and MEG data sets (dynamical system reconstruction), and apply linear control theory to investigate the energy demands of the resulting network architectures. A Ph.D. and background in computational modeling, engineering or a related discipline is required; expertise with linear control theory and dynamical systems theory are preferred but not necessary. Interested candidates should email their CV, a statement of research interests, and have three letters of reference forwarded to Clay Holroyd at clay.holroyd(a)ugent.be. Inquiries may be directed to him at this email address. Applications will be accepted until the positions are filled.

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Call for papers - Special Issue: Bio-Inspired Computation Based on Mathematical Modeling—Theories and Applications in Health Sciences
by Barna Iantovics June 27, 2025

June 27, 2025

Call for papersSpecial Issue: Bio-InspiredComputation Based on Mathematical Modeling—Theories and Applications in HealthSciencesJournal: Mathematics (ISSN 2227-7390)Impact Factor 2.2 Submission https://www.mdpi.com/journal/mathematics/special_issues/9B5062KZ98 Dear Colleague, You are kindly invited tocontribute with a paper to the Special Issue. It is estimated that biologicallife that has evolved over millions of years will be a fruitful source ofinspiration for the development of novel computational mathematical methods inthe years to come, representing important research directions on mathematicalmodeling in the field of artificial intelligence. Diverse problems in healthsciences are computationally hard and cannot be solved efficiently via actualmethods. Mathematical modeling based on bio-inspired computing applied to solvecomputationally hard problems in health sciences domains is an emerging fieldin this area. Bio-inspired computing has been proven successful for solving alarge variety of problems in domains of science where other methods have notbeen so effective. In this context, this SpecialIssue invites researchers to contribute original works regarding thedevelopment of bio-inspired computational and hybrid methods for solvingdifficult problems in health sciences that represent significant scientificadvancements. Kind regards,Guest EditorsProf. Dr. Laszlo Barna IantovicsProf. Dr. Matthias DehmerProf. Dr. Francesco FlamminiProf. Dr. Frank Emmert-Streib

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[REMINDER] Apply now for the Computational Neuroscience Imbizo 2026 - application form closes July 1, 2025
by Spiros Chavlis June 27, 2025

June 27, 2025

Dear friends and colleagues, Student applications for the next Imbizo are OPEN. Apply before it’s too late. Don’t let this opportunity slip by if you are hoping to join the most diverse neuroscience summer school at the most beautiful beach in the world! If you know anyone who would benefit from an extraordinary computational neuroscience summer school, please distribute this information as widely as you can: SIMONS COMPUTATIONAL NEUROSCIENCE IMBIZO (#Imbizo2026) 11 January - 1 February 2026, Noordhoek Beach, Cape Town, South Africa https://imbizo.africa/ Application deadline: 1st July 2025 at 20:00 UTC The Imbizo is a southern hemisphere summer school aiming to promote computational neuroscience in Africa. It will bring together international and local students under the tutelage of the world's leading experts in the field. Like its international sister courses, this three-week summer school aims to teach central ideas, methods, and practices of modern computational neuroscience through a combination of lectures and hands-on project work. Mornings will be devoted to lectures on topics across the breadth of computational neuroscience, including experimental underpinnings and machine learning analogues. The rest of the day will be spent working on research projects under the close supervision of expert tutors and faculty. Individual research projects will focus on the modeling of neurons, neural systems, behavior, the analysis of state-of-the-art neural data, and the development of theories to explain experimental observations. It also includes a week focused on neuroscience-inspired machine learning! Who should apply? This course is aimed at Masters and early-PhD level students, though Honors or advanced Undergraduates may also apply. Postdoctoral students who can motivate why the course would benefit them are also encouraged to apply. Students should have sufficient quantitative skills (e.g., a background in mathematics, physics, computer science, statistics, engineering, or related fields). Some knowledge of neural biology will be useful, but not essential. Experimental neuroscience students are encouraged to apply, but should ensure that they have a reasonable level of quantitative proficiency (i.e., at least second-year level mathematics or statistics and have done at least one course in computer programming). Course fees and Scholarships: Course Fee: €1,550 includes all accommodation, meals, social activities, and ground transport in Cape Town. Thanks to our generous sponsors, significant financial assistance is available to reduce and waive fees for students, particularly for African applicants. We also hope to provide some limited travel bursaries for international students. If you need financial assistance to attend Imbizo, please state so clearly in the relevant section of your application. Scholarships on offer: (a) Full Scholarship includes a waived course fee (€1,550) and your economy class travel to Cape Town, which will be booked by the Imbizo. (b) Partial Scholarship includes a waived course fee (€1,550) and a set financial contribution towards your travel costs (paid after arrival in Cape Town). The amount will vary on a case-by-case basis. (c) Course Scholarship includes a waived course fee (€1,550), but you will be responsible for booking and paying for your own travel costs to Cape Town. Note: (a) You must ensure you have a valid passport until at least the 31st of July 2026 when applying. (b) Visa application and related costs remain the responsibility of all accepted students. Important dates: Applications CLOSE: 1st July 2025 at 20:00 UTC References SUBMITTED: 7th July 2025 at 20:00 UTC Outcomes NOTIFIED: mid-August 2025 Accept BY: 1 week after notifications Imbizo STARTS: 11 January 2026 Imbizo ENDS: 1 February 2026 Information and application https://imbizo.africa/ Questions? isicn.imbizo.planning [AT] gmail.com What is an Imbizo? \ɪmˈbiːzɒ\ | Xhosa - Zulu A gathering of the people to share knowledge. View our past FACULTY and TAs: https://imbizo.africa/people/ Imbizo 2026 Organizing Committee Arif Hamid (University of Minnesota) Adrienne Fairhall (University of Washington) Xaq Pitkow (Carnegie Mellon University) Emma Vaughan (Imbizo Logistics) Spiros Chavlis (IMBB-FORTH) Sponsors The Imbizo is made possible by the generous support from the Simons Foundation (https://www.simonsfoundation.org/) the International Brain Research Organisation (IBRO) (https://ibro.org/) as well as DeepMind, Meta, and others.

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