December 2025 - Comp-neuro - lists.cnsorg.org

Neuroinformatics Unit Open Software Summer School, August 2026 in London
by Nikoloz Sirmpilatze Dec. 4, 2025

Dec. 4, 2025

Applications are now open for the second Neuroinformatics Unit Open Software Summer School (OSSS) <https://neuroinformatics.dev/open-software-summer-school/index.html>, August 17-28 2026 in London, U.K. Join us for one or two of the following tracks: Animals in Motion (analysing video behavioural data) Large Array Data (how to handle large data in Python) BrainGlobe (species-agnostic computational neuroanatomy) Extracellular Electrophysiology (using SpikeInterface to process probe data) Each week starts with a symposium on the Monday afternoon, followed by 3 days of hands-on training, then 2 days of collaborative hacking, bringing together researchers and engineers to use, and improve neuroscience open source software. Please share with anyone who may be interested! Financial support is available. Apply now: https://neuroinformatics.dev/open-software-summer-school Kind regards, Niko Sirmpilatze NIKOLOZ SIRMPILATZE MD PhD Senior Research Software Engineer Neuroinformatics Unit Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit University College London nikosirmpilatze.com

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Postdoc position for biophysical modeling and measurement of TMS effects
by Thomas Knoesche Dec. 4, 2025

Dec. 4, 2025

The Max Planck Institute for Human Cognitive and Brain Sciences (MPI CBS) in Leipzig, Germany, is an internationally recognized research institute of the Max Planck Society and is dedicated to the study of human cognitive abilities and brain processes as well as the development of neuroimaging methods. The Brain Networks Group led by Professor Thomas Knösche offers a Postdoc position (m/f/d) for 3 years. The successful candidate will work on a DFG funded project that is dedicated to the investigation of the working mechanisms underlying the effects of transcranial magnetic stimulation (TMS) of the human motor cortex using advanced electrophysiological measurement techniques combined with biophysical modeling. The project will be carried out in cooperation between the Leipzig University of Applied Sciences, the Czech Academy of Sciences, and the MPI-CBS. Candidates should hold a PhD degree and have a background in engineering, computer science, neuroscience, physics, or similar, as well as a keen interest in neuroscience. Good computer programming skills (e.g., C++, Matlab, Python) are necessary. The ideal candidate would have experience in EEG or MEG (or similar) experimenting, data analysis, and modeling. Prior exposure to volume conduction modeling and/or source analysis would be beneficial. The Institute offers a world-leading research environment with outstanding facilities and research infrastructure (five MR scanners, including a 3T Connectom and 7T Terra.X; MEG; EEG; TMS). The Brain Networks group is dedicated to the development of methods to investigate, model, and understand brain networks and how they give rise to human behavior and cognition. Current projects are centered around non-invasive brain stimulation of the motor system, sensory perception, the relation between human cognition and machine learning, and others. The position is offered for three years. Starting date is in principle flexible, while we aim to get started as soon as possible. The salary is fixed in accordance with the collective agreement for the public sector: TVöD E13. We look forward to receiving your complete online application (reference number “PostDoc 16/25”). Please submit through the online application system on the MPI-CBS website: (1) a statement describing your research interest and motivation to apply for this position as well as your relevant qualifications (max. 2 pages), (2) a full CV, (3) transcript of records for the master and bachelor degrees, and (4) names and contact details of up to two potential referees. There is no formal closing date for the application – it will remain open until filled. Please feel free to contact Prof. Dr. Thomas R. Knösche (knoesche(a)cbs.mpg.de) for informal enquires about the position. The Max Planck Society seeks to employ more people with disabilities and strongly encourages them to apply. Furthermore, we actively support the compatibility of work and family life. The Max Planck Society strives for gender equality and diversity. -- Prof. Dr. Thomas R. Knösche Brain Networks (@brainnetleipzig) Max Planck Institute for Human Cognitive and Brain Sciences Stephanstraße 1A 04103 Leipzig Germany Tel +49 341 9940 2619 Fax +49 341 9940 2624 knoesche(a)cbs.mpg.de http://www.cbs.mpg.de/~knoesche

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Konstanz School of Collective Behavior 2026 ( Deadline: March 15th, 2026)
by Ahmed El Hady Dec. 2, 2025

Dec. 2, 2025

*Konstanz School of Collective Behaviour 2026* *Konstanz, Germany * *20th July 2026 – 7th August 2026 *** *Deadline to apply: March 15th, 2026* The Konstanz School of Collective Behaviour (KSCB) <https://www.exc.uni-konstanz.de/kscb/about/> will take place between 20th July – 7th August 2026 at the Cluster of Excellence Centre for the Advanced Study of Collective Behaviour (CASCB) at the University of Konstanz <https://www.uni-konstanz.de/en/>. Konstanz <https://www.konstanz.de/start> is a vibrant, small city located on the border between Germany and Switzerland, on the shores of the Bodensee (Lake Constance). Over three weeks, students will delve deeply into the topic of collective behaviour with lectures, hands-on tutorials, and projects, making it a unique and unforgettable experience. The school faculty will cover collective behaviours across a variety of species from cells, worms, drosophila, fish to non – human primates and human. A set of tutorials delving into state-of-the-art quantitative methods used to study collective behaviour will complement the lectures. At the end of the school, students will work on independent projects guided by our resident faculty and tutors. The Konstanz School of Collective Behaviour is intended for graduate students, doctoral researchers, and early postdoctoral researchers. We consider applicants with strong quantitative background including but not limited to physics, computer science, mathematics and engineering. Applicants with biological and experimental background will be considered if they demonstrate in their application extensive quantitative and mathematical background as the focus of the school is quantitative study of collective behaviours. Accommodation will be provided and paid by the organizers. A limited number of travel support will be provided and a registration fee will be due (500 Euros) once the student is admitted to the Konstanz School of Collective Behaviour. The registration fee will be waived to those coming from underrepresented minorities and those in need of financial support. The submission of applications for the fourth Konstanz School of Collective Behaviour is currently open until March 15, 2026. We will inform the applicants during the month of April whether their application was successful For further information about the school and the application procedure , visit our website: _https://www.exc.uni-konstanz.de/kscb/application-procedure/ _ *KSCB 2026 faculty : * ·Anastasia Bizyaeva ( Cornell University, USA) ·Iain Couzin ( University of Konstanz / Max Planck Institute of Animal Behavior) ·Einat Couzin-fuchs ( University of Konstanz ) ·David Garcia ( University of Konstanz ) ·Dan Gorbonos ( Holon Institute of Technology, Israel and Max Planck Institute of Animal Behavior) ·Stefan Krapitscka ( University of Konstanz ) ·Zachary Kilpatrick ( University of Colorado Boulder, USA) ·Liang Li ( Max Planck Institute of Animal Behavior) ·Yonatan Loewenstein ( Hebrew University of Jerusalem, Israel) ·Ran Nathan ( Hebrew University of Jerusalem, Israel ) ·Mor Nitzan ( Hebrew University of Jerusalem, Israel) ·Britta Renner ( University of Konstanz ) ·Allyson Sgro ( Janelia Farm Research Campus, Virginia, USA) ·Joshua Shaevitz ( Princeton University, USA) ·Ariana Strandburg-Peshkin ( Max Planck Institute of Animal Behavior) ·Katrin Vogt ( University of Konstanz ) *In case you have any questions, please contact: **ahmed.el-hady(a)uni-konstanz.de <mailto:ahmed.el-hady@uni-konstanz.de>** * All the best regards, Ahmed El Hady On behalf of the KSCB organizational committee Dr. Ahmed El Hady Principal Investigator Cluster for Advanced Study of Collective Behavior, University of Konstanz Max Planck Institute of Animal Behavior Universitätsstraße 10, 78464 Konstanz Room ZT 907 Postbox 687 Tel.: +49 7531 88-4742

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Research Fellow / Postdoc positions in TMS modeling - ICS CAS (Czechia)
by Vincent Chien Dec. 2, 2025

Dec. 2, 2025

* Research Fellow / Postdoc positions in TMS modeling There is an open position for a Research Fellow / Postdoctoral position in Computational Neuroscience within the TMSmodel project, jointly led by Konstantin Weise (HTWK, Leipzig), Thomas R. Knösche (MPI-CBS, Leipzig), and Vincent S.C. Chien (CAS, Prague). The goal of the project is to develop a comprehensive biophysical model that explains the dependence of motor-evoked potentials (MEPs) recorded from hand muscles, as well as D-I-waves measured from the spinal cord, on the parameters of Transcranial Magnetic Stimulation (TMS). The successful candidate will join the Complex Networks and Brain Dynamics group and will focus on (1) transmission of action potential volleys along spinal and peripheral axon bundles, (2) modeling the spinal cord circuitry and muscle activation, and (3) fitting and evaluating the model against electric recordings. * Research Teams COBRA Lab (Czech Academy of Sciences): https://cobra.cs.cas.cz/ Brain Networks Group (Max Planck Institute): https://www.cbs.mpg.de/methods-and-development-groups/brain-networks * Job Details & Application Link https://www.cs.cas.cz/job-offer/Research-fellow-postdoctoral-positions-Chie… Sincerely, Vincent Chien, Ph.D. Department of Complex Systems, Institute of Computer Science, Czech Academy of Sciences

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