June 2024 - Comp-neuro - lists.cnsorg.org

Reminder: FENS Satellite Symposium on Dynamic Auditory Predictions in Human and Non-human Primates
by Robert Baumgartner June 11, 2024

June 11, 2024

[Apologies for cross-postings] Dear Colleagues, a few places have recently become available to attend and present a poster at our Dynamates Symposium on ‘Dynamic Auditory Predictions in Human and Non-human Primate’. It is organised as a satellite event of this year’s FENS Forum and takes place in Vienna, Austria, on Monday, June 24, 2024, so less than two weeks from now. This symposium brings together experts in the field of cognitive neuroscience, cognitive biology and computational modelling to address key questions in predictive auditory processing with a focus on spatial and temporal auditory perception in volatile environments. It will cover purely behavioural approaches as well as combinations with eyetracking, EEG and other neuroimaging modalities. Invited speakers: - Tecumseh Fitch (University of Vienna, Austria) - Florent Meyniel (Neurospin, CEA Paris-Saclay, France) - John van Opstal (Donders Centre for Neuroscience, Netherlands) - Barbara Shinn-Cunningham (Carnegie Mellon Neuroscience Institute, USA) Registration: - Fill out this form <https://leidenuniv.eu.qualtrics.com/jfe/form/SV_22WteXETC6Ay47A> - First come first serve (max. 60 participants) - Registrants encouraged to submit a poster abstract For further details, visit our symposium webpage: https://www.oeaw.ac.at/isf/dynamates-symposium <https://www.oeaw.ac.at/isf/dynamates-symposium-2024> Best wishes from the organizing committee, Robert Baumgartner Burcu Bayram Roman Fleischmann Julia Grabner David Meijer Ulrich Pomper Michelle Spierings — Robert Baumgartner, PhD (he/him) Head of Auditory Cognitive Neuroscience Acoustics Research Institute Austrian Academy of Sciences Dominikanerbastei 16, 1010 Vienna, Austria +43 1 51581-2527 @RobeBaumgartner

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MNE Python EEG/ERP Data Analysis Course
by elham afshari June 10, 2024

June 10, 2024

Dear Members, Several of my students and professors have found this comprehensive EEG/ERP Data Analysis course <https://www.udemy.com/course/eegerp-analysis-with-python-and-mne-an-introdu…> incredibly useful. It’s perfect for beginners, covering everything from EEG history and recording techniques to advanced analyses with practical Python-MNE exercises. The expert teacher uses everything (from drawing to simple codes) to explain details. Link for Enroll: Introductory Course on EEG/ERP using MNE and Python <https://www.udemy.com/course/eegerp-analysis-with-python-and-mne-an-introdu…> Bests,

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Register now for the Bernstein Conference 2024
by Alexander Lammers June 10, 2024

June 10, 2024

The registration for the Bernstein Conference 2024 is open. Registration website: https://bernstein-network.de/bernstein-conference/registration/ ____ Each year the Bernstein Network invites the international computational neuroscience community to the annual Bernstein Conference for intensive scientific exchange. It has established itself as one of the most renowned conferences worldwide in this field, attracting students, postdocs, and PIs from around the world to meet and discuss new scientific discoveries. Conference website: https://bernstein-network.de/bernstein-conference/ ____ IMPORTANT DATES * Travel Grant application deadline: Jun 26, 2024 (15:00 CEST) * Poster abstract submission deadline: Jul 10, 2024 (15:00 CEST) * Early registration deadline: Jul 31, 2024 (23:59 CEST) * Late registration deadline: Sep 11, 2024 (23:59 CEST) * Bernstein Conference: Sep 29 – Oct 2, 2024 ____ INVITED SPEAKERS Dmitriy Aronov (Columbia University, USA) Helen Barron (University of Oxford, UK) Elizabeth Buffalo (University of Washington, USA) Alex Cayco Gajic (Ecole Normale Supérieure, France) Jan Drugowitsch (Harvard University, USA) Jakob Macke (University of Tübingen, Germany) Tirin Moore (Stanford University, USA) Mala Murthy (Princeton University, USA) Memming Park (Champalimaud Foundation, Portugal) Susanne Schreiber (Humboldt Universität zu Berlin, Germany) Xiao-Jing Wang (New York University, USA) ____ CONFERENCE COMMITTEE Matthias Kaschube (Conference Chair) Srdjan Ostojic (Program Chair) Tatiana Engel (Program Vice Chair) Maria Eckstein (Workshop Chair) Wiktor Młynarski (Workshop Vice Chair) & Athena Akrami, Mehrdad Jazayeri, Jennifer Li, Scott Linderman, Ashok Litwin-Kumar, Ida Momennejad, Christina Savin, Andrew Saxe, Daniela Vallentin, Friedemann Zenke. ____ For any further questions, please contact: bernstein.conference(a)fz-juelich.de<mailto:bernstein.conference@fz-juelich.de> ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Jülich GmbH 52425 Jülich Sitz der Gesellschaft: Jülich Eingetragen im Handelsregister des Amtsgerichts Düren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Stefan Müller Geschäftsführung: Prof. Dr. Astrid Lambrecht (Vorsitzende), Karsten Beneke (stellv. Vorsitzender), Dr. Ir. Pieter Jansens ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

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:::Deadline extension::: EITN Fall School in Computational Neuroscience 2024
by DEPANNEMAECKER Damien June 10, 2024

June 10, 2024

The application deadline has been extended to July 7. Due to technical issues, the email address previously announced is not working, please send your application to: eitnfs2024(a)protonmail.ch EITN Fall School in Computational Neuroscience 2024 <https://eitnschool2022.sciencesconf.org/> Marseille, 16-25 October 2024 The EITN Fall School in Computational Neuroscience consists of a 10-day course in theoretical and computational neuroscience, from cellular to whole-brain levels. The course is structured in thematic days with lectures, tutorials, and project work. The course is typically aimed at PhD students, young postdocs, or master students interested to learn more about techniques of computational neuroscience, and the use of various simulation environments for model building. The students will form thematic groups to work on predefined subjects, with the help of tutors. The course will cover cellular models, models of brain signals, circuit models and networks, mean-field models, and whole-brain models. There will be lectures and tutorials associated with these topics. Why join? 10 days of intensive training in computational neuroscience provided by researchers from all over Europe. A complete program: • Cellular models, and models of brain signals • Circuit models and networks • Mean-field models • Whole-brain models Hands-on learning schedule based on: • Morning classes and tutorials • Group projects in the afternoon • Free time in the evenings and on Sunday to visit Marseille How to apply? This training has a limited capacity of 28 students, therefore a selection will be performed by a scientific organizing committee. Applications are open until July 7, 2024. Application: a one-page CV, a motivation letter to explain why you would like to attend this course, and a recommendation letter. The file names must start with your name (e.g., NAME_CV.pdf, etc....). Send your application by email at eitnfs2024(a)protonmail.ch Due to technical issue the email address previously announced is not working, please send your application at: eitnfs2024(a)protonmail.ch EITN Fall School in Computational Neuroscience 2024 <https://eitnschool2022.sciencesconf.org/> Marseille, 16-25 October 2024 The EITN Fall School in Computational Neuroscience consists of a 10-day course in theoretical and computational neuroscience, from cellular to whole-brain levels. The course is structured in thematic days with lectures, tutorials, and project work. The course is typically aimed at PhD students, young postdocs, or master students interested to learn more about techniques of computational neuroscience, and the use of various simulation environments for model building. The students will form thematic groups to work on predefined subjects, with the help of tutors. The course will cover cellular models, models of brain signals, circuit models and networks, mean-field models, and whole-brain models. There will be lectures and tutorials associated with these topics. Why join? 10 days of intensive training in computational neuroscience provided by researchers from all over Europe. A complete program: • Cellular models, and models of brain signals • Circuit models and networks • Mean-field models • Whole-brain models Hands-on learning schedule based on: • Morning classes and tutorials • Group projects in the afternoon • Free time in the evenings and on Sunday to visit Marseille How to apply? This training has a limited capacity of 28 students, therefore a selection will be performed by a scientific organizing committee. Applications are open until 09 June 2024. Application: a one-page CV, a motivation letter to explain why you would like to attend this course, and a recommendation letter. The file names must start with your name (e.g., NAME_CV.pdf, etc....). Send your application by email at eitnfs2024(a)protonmail.ch

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Apply now for the Computational Neuroscience Imbizo 2025 - app close 24th July
by Spyridon Chavlis June 10, 2024

June 10, 2024

Dear friends and colleagues, Student applications for the next Imbizo are *OPEN*. Don’t let this opportunity slip by if you are hoping to join the most diverse neuroscience summer school at the most beautiful beach in the world! If you know anyone who would benefit from an extraordinary computational neuroscience summer school, please distribute this information as widely as you can: SIMONS COMPUTATIONAL NEUROSCIENCE IMBIZO (#Imbizo2025) 12 January - 2 February 2025, Noordhoek Beach, Cape Town, South Africa (https://imbizo.africa/) *Application deadline: 24th July 2024 at 20:00 UTC* The Imbizo is a southern hemisphere summer school aiming to promote computational neuroscience in Africa. It will bring together international and local students under the tutelage of the world's leading experts in the field. Like its international sister courses, this three-week summer school aims to teach central ideas, methods, and practices of modern computational neuroscience through a combination of lectures and hands-on project work. Mornings will be devoted to lectures on topics across the breadth of computational neuroscience, including experimental underpinnings and machine learning analogues. The rest of the day will be spent working on research projects under the close supervision of expert tutors and faculty. Individual research projects will focus on the modeling of neurons, neural systems, behavior, the analysis of state-of-the-art neural data, and the development of theories to explain experimental observations. It also includes a week focused on neuroscience-inspired machine learning! *Who should apply?* This course is aimed at Masters and early-PhD level students, though Honors or advanced Undergraduates may also apply. Postdoctoral students who can motivate why the course would benefit them are also encouraged to apply. Students should have sufficient quantitative skills (e.g., a background in mathematics, physics, computer science, statistics, engineering, or related fields). Some knowledge of neural biology will be useful but not essential. Experimental neuroscience students are encouraged to apply but should ensure that they have a reasonable level of quantitative proficiency (i.e., at least second-year level mathematics or statistics and have done at least one course in computer programming). *Course fees and Scholarships:* Course Fee: €1450 includes all accommodation, meals, social activities, and ground transport in Cape Town. Thanks to our generous sponsors, significant financial assistance is available to reduce and waive fees for students, particularly for African applicants. We also hope to provide some limited travel bursaries for international students. If you need financial assistance to attend Imbizo, please state so clearly in the relevant section of your application. *Scholarships on offer:* (a) Full Scholarship includes a waived course fee (€1450) and your economy class travel to Cape Town, which will be booked by the Imbizo. (b) Partial Scholarship includes a waived course fee (€1450) and a set financial contribution towards your travel costs (paid after arrival in Cape Town). The amount will vary on a case by case basis. (c) Course Scholarship includes a waived course fee (€1450), but you will be responsible for booking and paying for your own travel costs to Cape Town. *Note:* (a) You must ensure you have a valid passport when applying. (b) Visa application and related costs remain the responsibility of all accepted students. *Important dates:* Applications CLOSE 24th July 2024 at 20:00 UTC References SUBMITTED 31st July 2024 at 20:00 UTC Outcomes NOTIFIED mid-September 2024 Accept BY 1 week after notifications Imbizo STARTS 12 January 2025 Imbizo ENDS 2 February 2025 *Information and application* https://imbizo.africa/ *Questions?* isicn.imbizo.planning [AT] gmail.com What is an Imbizo? \ɪmˈbiːzɒ\ | Xhosa - Zulu A gathering of the people to share knowledge. View our past FACULTY and TAs: https://imbizo.africa/people/ *ORGANIZERS and 2025 Affiliate Organisations:* Arif Hamid (University of Minnesota) Peter Latham (Gatsby Unit for Computational Neuroscience) Xaq Pitkow (Carnegie Mellon University) Emma Vaughan (Imbizo Logistics) Spiros Chavlis (Foundation for Research and Technology-Hellas) *Sponsors* The Imbizo is made possible by the generous support from the Simons Foundation (https://www.simonsfoundation.org/) the International Brain Research Organisation (IBRO) (https://ibro.org/) as well as the DeepMind, Meta, and others. Thanks and regards Simons Computational Neuroscience Imbizo Committee imbizo.africa <https://imbizo.africa/> @CompNeuroImbizo <https://x.com/CompNeuroImbizo> -- *Spyridon Chavlis, PhD* Postdoctoral Researcher and Systems Administrator Poirazi Lab Institute of Molecular Biology and Biotechnology (IMBB) Foundation for Research and Technology-Hellas (FORTH) Nikolaou Plastira, 100 GR 70013 Heraklion, Crete, Greece Tel: (+30) 2810 39 1264 Εmail: chavlis.spiros(a)gmail.com Webpage: dendrites.gr <https://www.dendrites.gr>

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Postdoc and PhD position at University of Miami - spontaneous thoughts, AI, computational psychiatry
by Mingbo Cai June 9, 2024

June 9, 2024

Dear list members, Apologies for cross-posting. *Postdoc and PhD student positions on fMRI study of spontaneous thoughts* The lab led by Mingbo Cai (*https://cailab-miami.org/* <https://cailab-miami.org/>) at the Department of Psychology, University of Miami, seeks a talented cognitive neuroscientist or AI researcher to join as a postdoctoral associate in the beautiful Miami of USA! The primary focus of this position is to work on an exciting collaborative project of decoding spontaneous thoughts. However, candidates with strong background and interest in other major directions of the lab (learning and decision making, computational psychiatry) are also welcome to apply. For the project on spontaneous thoughts, the candidate will work closely with Dr. Mingbo Cai, the director of the lab, and have the opportunity to collaborate with Nicolas Schuck (*https://schucklab.gitlab.io/* <https://schucklab.gitlab.io/>) at University of Hamburg and Quentin Huys ( *https://www.mps-ucl-centre.mpg.de/person/104585* <https://www.mps-ucl-centre.mpg.de/person/104585>) at University College London, with the added possibility of establishing new collaboration with other faculty inside the department ( *https://www.psy.miami.edu/people/faculty/faculty-by-division/index.html* <https://www.psy.miami.edu/people/faculty/faculty-by-division/index.html>). The intended project focuses on understanding the contents and dynamics of spontaneous thoughts using fMRI decoding and natural tasks, their interaction with memory and emotion, and rumination in mental disorders. You will have the opportunity to analyze a rich fMRI dataset of healthy and clinical participants during spontaneous thoughts, and conduct new experiments. Expertise and track record in at least one of the following domains are highly desirable: deep learning models on natural language processing or computer vision, advanced analysis of fMRI using encoding or decoding models, computational modeling of spontaneous thoughts or psychiatric disorders or human behavior, design of experiments using naturalistic stimuli. Deadline for applications: August 31, 2024. Strong applications will be evaluated immediately upon receiving. The position will remain open until filled. *Interested candidate can submit the following documents at this link:* *https://careers.miami.edu/us/en/job/R100076995/Post-Doctoral-Associate-Psychology* <https://careers.miami.edu/us/en/job/R100076995/Post-Doctoral-Associate-Psyc…> - a cover letter including contact information for 2-3 reference letters - CV - research statement - writing sample representing your works. Multiple manuscripts may be concatenated into one pdf. Informal inquiry can be sent to mingbo [dot] cai [at] miami [dot] edu, with a title of "[postdoc] + *your name*" The lab will also accept a PhD student in Fall 2025. Email inquiry is welcome with a title of "[grad application] + your name" Best wishes, Mingbo Cai Assistant Professor Department of Psychology University of Miami https://cailab-miami.org

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PhD position at Bernstein Center Berlin & Humboldt University (Physics Dep.) available
by Benjamin Lindner June 7, 2024

June 7, 2024

Efficient representations of fast dynamic stimuli in populations of ON- and OFF-cells Within the DFG priority program "Evolutionary Optimisation of Neuronal Processing" and in an experiment-theory collaboration with the Benda/Grewe lab in Tübingen, we are looking for a PhD candidate to work on signal transmission of time-dependent signals in the electrosensory system of weakly electric fish. Specifically, we are interested in the following research questions: 1. How are high-frequency signals efficiently encoded in ON-OFF-pathways despite strongly reduced firing rates? 2. What is the impact of feedback on the representation of high-frequency information in ON- OFF-pathways? In order to get an idea about similar approaches pursued in the past, have a look at some of the joint publications of the Benda lab and the Lindner group: Fisch et al. J. Neurosci. 32, 17332 (2012) Sharafi et al. J. Comp. Neurosci. 34 , 285 (2013) Grewe et al. PNAS 114 E1977 (2017) The successful candidate should have a degree in physics, mathematics or computational neuroscience (a background in neurobiology is desirable but not obligatory), programming skills (C++, Python, LaTeX, Linux), an excellent command of the English language, good communication skills, team spirit, and, last but not least, great enthusiasm for interdisciplinary projects. Funding is provided for three years, starting in the fall 2024. For details on the doctoral examination process at the Physics Department of Humboldt University Berlin, see https://fakultaeten.hu-berlin.de/en/mnf/wisskar/promotionen/zula. Applications, including a letter of motivation, a CV, and a list of three potential referees should be sent by email to   me benjamin.lindner(a)physik.hu-berlin.de  (cc to officebl(a)bccn-berlin.de) The deadline for applications is July 17, 2024, however, later applications might also be considered. Kind regards, Benjamin Lindner -- Benjamin Lindner Professor for Theory of Complex Systems and Neurophysics BCCN Berlin Philippstr. 13, Haus 2, 10115 Berlin Room: 1.17, phone: 0049(0)302093 82492 (new number!!) Physics Dep. Humboldt University Berlin Newtonstr. 15 12489 Berlin Room: 3.412, phone: 0049(0)302093 7934 http://people.physik.hu-berlin.de/~lindner/index.html -----------------------------------------------------

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Last call: abstract submission for the 2024 Neuroinformatics Assembly
by Helena Ledmyr June 7, 2024

June 7, 2024

Join the INCF community at the Neuroinformatics Assembly 2024 in Austin, Texas, Sept 23-27! This year's theme is "Brain meets AI: pioneering the future of neuroinformatics". We have two days of training courses after the main conference, see all the sessions at https://neuroinformatics.incf.org/2024/sessions. See the conference topics and submit your abstract today at bit.ly/INCFabstracts We hope to see you in Austin! ----------------------------- Helena Ledmyr, PhD *Director* *Development and Communications* <https://neuroinformatics.incf.org/> International Neuroinformatics Coordinating Facility Secretariat Karolinska Institutet. Nobels väg 15A, SE-171 77 Stockholm. Sweden Email: helena.ledmyr(a)incf.org Phone: +46 8 524 870 35 incf.org

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ReLab: Rewilding Ethology Laboratory, Konstanz, August 26-30 2024
by Mateusz Kostecki June 7, 2024

June 7, 2024

Hello! We are super happy to announce our next event, organized in collaboration between us, Center for the Advanced Study of Animal Behaviour, University of Konstanz and Max Planck Institute of Animal Behaviour! Are you ready for an expedition into the multifarious world of animal behaviour, where the lab meets the wild? Join us for RELab, *a unique experimental workshop in the scenic location of Lake Constance, Germany.* Unlike well-established scientific frameworks relying on synthetic stimuli, working with real, complex naturalistic stimuli presents unique challenges in tractability, interpretability, and relevance. This workshop will bring together* 16 exceptional early-career scientists and 5 renowned principal investigators in the fields from systems neuroscience to ethology*, to tackle conceptual and practical challenges in analyzing natural behaviours. RELab is not just about conventional lectures; it’s about *prototyping paradigms and hacking them together in both natural and controlled environments*. RELab is designed as a dialogue and a collective journey of discovery. For 5 days, participants will engage in: - Naturalist hikes and field experiments, exploring the natural habitats around Lake Constance (Bodensee). - Laboratory sessions employing advanced technologies such as virtual reality, collaborative activities integrating field and lab perspectives in real-time. - Thought-provoking talks and discussions with leading experts, aiming to build a new understanding of natural behaviours. Come enjoy the beautiful Bodensee region for an adventure of intellectual exploration, collaborative discovery, and vibrant community building. RELab is supported by the Centre for the Advanced Study of Collective Behaviour (CASCB) and Nencki Open Lab and it will be hosted by the Max Planck Institute of Animal behaviour, ensuring a high-quality, inclusive, and stimulating environment. Together, we aim to lay the groundwork for achieving new meaningful insights into behaviour in a complex world where standardized procedures may not exist. *Rewilders* Anna Stöckl (CASCB, Dept. of Biology, Uni Konstanz) Armin Bahl (MPI-AB, CASCB, Dept. of Biology, Uni Konstanz) Einat Couzin-Fuchs (MPI-AB, CASCB, Dept. of Biology, Uni Konstanz) Katja Reinhard (International School for Advanced Studies, Trieste) Raghavendra Gadagkar (Indian Institute of Science, Bengaluru) *Where, When, and How* RELab will be held on the Lake of Constance, Germany, 26-30 August 2024 (arrival on August 25, departure on August 31). The fee is EUR 750, and includes accommodation in shared double rooms at the venue and all meals for the duration of the workshop (breakfasts, lunches and dinners); it also includes dinner on the night before the workshop begins. We are securing funds for fee waivers, please specify in the registration form if you need one. PhD students and postdocs from systems neuroscience or animal behavior, as well as related disciplines, are encouraged to apply. We will also consider exceptional applications from pre-PhD students. How to apply: The application form is available here https://docs.google.com/forms/d/e/1FAIpQLSftN3DG-PKhaqN30Jmgia4_3YKQJoL6g_R…. . The deadline for application is 24 June 2024. For inquiries, please contact the organizers. *Organizers:* August Paula (MPI-AB, CASCB, Dept. of Biology, Uni Konstanz) Cyrill Fromm (MPI-AB, CASCB, Dept. of Biology, Uni Konstanz) Iacopo Hachen (MSCA Fellow, MPI-AB, Dept. of Biology, CASCB, Uni Konstanz) Kajal Kumari (MPI-AB, CASCB, Dept. of Biology, Uni Konstanz) Mateusz Kostecki (Nencki Institute) Pavan Kaushik (MPI-AB, CASCB, Dept. of Biology, Uni Konstanz) Ruiheng Wu (MPI-AB, CASCB, Uni Konstanz) Best! NOL Team -- --- Mateusz Kostecki PhD Student Knapska Laboratory Nencki Institute 02-093 Warsaw, Pasteura 3, Poland https://twitter.com/mtkostecki https://evolvingbehavior.blog/

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Research software engineer position at Zuckerman Institute (Columbia University)
by Matthew R. Whiteway June 5, 2024

June 5, 2024

Columbia University's Zuckerman Mind Brain Behavior Institute is seeking a research software engineer to work closely with both computational and experimental neuroscience labs within the Zuckerman Institute ( https://zuckermaninstitute.columbia.edu/) and the International Brain Lab ( https://www.internationalbrainlab.com/) to help develop and maintain cutting edge software tools for the analysis of large-scale behavioral video data. Other responsibilities include: • Assist labs with deploying this software in their data processing pipelines • Respond to user issues provided through various channels (Github issues, Discord, Slack) by providing bug fixes • Engage in software dissemination efforts including written documentation, video tutorials, and assisting with workshops • Assist machine learning researchers in incorporating new algorithms into the software Please see the job posting for more information: https://apply.interfolio.com/147471 Matt Whiteway Associate Research Scientist, Zuckerman Institute, Columbia University Data Scientist, International Brain Laboratory

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