November 2022 - Comp-neuro - lists.cnsorg.org

Python Package: SER model
by Fabrizio Damicelli Aug. 8, 2024

Aug. 8, 2024

Dear Computational Neuroscience Community, I would like to point you to a potentially useful Python Package that might be of interest for your research, especially in the realm dynamical models and spreading dynamics on networks. "ser": S(usceptible)E(xcited)R(efractory) model on graphs, a dynamical model of spreading excitations. Code Repository: https://github.com/fabridamicelli/ser As of today, a few people already trust it and the package registers >11K total downloads, ~500/month (… [View More]

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Call for Visiting Scholars in Theoretical Sciences at OIST (Application by August 15)
by Kenji Doya Oct. 21, 2023

Oct. 21, 2023

We are pleased to announce Visiting Scholars in Theoretical Sciences at OIST for a flexible term of 1 to 12 months as below. ***** As part of an initiative to develop a vibrant program in theoretical sciences, OIST invites applications for Visiting Scholars in the Theoretical Sciences. The Okinawa Institute of Science and Technology (OIST) is a research institution with a Ph.D. program. Outstanding graduate students and faculty are being attracted internationally. OIST is beautifully situated … [View More]

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Faculty position at Cold Spring Harbor Laboratory in computational neuroscience
by Benjamin Cowley Aug. 28, 2023

Aug. 28, 2023

Hi all, Cold Spring Harbor Laboratory has an open search for a faculty position in computational/theoretical neuroscience. Applications are due Nov. 15, 2022. https://www.cshl.edu/about-us/careers/faculty-positions/ Here is the job description: Cold Spring Harbor Laboratory (CSHL) is seeking to fill a faculty position in the area of COMPUTATIONAL/THEORETICAL NEUROSCIENCE. Of particular interest to this search are candidates with expertise in computational and theoretical neuroscience, … [View More]machine learning, and artificial intelligence. The successful candidate will have an outstanding record of research achievement and an innovative research program. They will join a highly interactive and collaborative neuroscience group working on neural circuits, neural development, neurogenetics, theoretical and computational neuroscience, artificial intelligence, synaptic function, brain disorders, rodent cognition, perception, and social behavior. Preference will be given to applicants at the Assistant Professor level, but outstanding candidates at all career stages will be considered. Cold Spring Harbor Laboratory is a world-renowned research and educational institution with programs in cancer, neuroscience, plant biology, genomics, and quantitative biology. Located on the North Shore of Long Island 30 miles from New York City, the Laboratory has a rich and successful research environment rooted in interdisciplinary collaboration as well as an innovative graduate school that attracts talented students each year. CSHL is committed to fostering a diverse work environment that values best practices in mentorship, equity, and inclusion. Successful candidates will be expected to establish productive research programs while mentoring diverse groups of students and postdocs. Applications are strongly encouraged from groups historically underrepresented in science, including women and U.S. racial/ethnic minority populations. To apply, please submit a cover letter, CV, description of research accomplishments, statement of future research plans, and a statement of diversity & mentoring to: https://cshl.peopleadmin.com/postings/20153 Position ID 03299-R; letters of reference will be requested separately. The statement of diversity & mentoring should describe a candidate’s mentoring philosophy, contributions to equity and inclusion in science, and prior training (as applicable) in mentoring, academic management/leadership, and antidiscrimination/antiracism. We will begin considering applications on a rolling basis on October 5, 2022, and applications will be considered until *November 15*. Inquiries regarding the search should be directed to: CSHLfacultyjobs(a)cshl.edu [View Less]

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Funded PhD Scholarship in Developmental Neurorobotics at Sheffield Hallam University (UK)
by Di Nuovo, Alessandro Feb. 16, 2023

Feb. 16, 2023

About the Project This scholarship will support the PhD candidate to carry out frontier research in Developmental Neurorobotics, a combination of Neuromorphic Computing and Cognitive Developmental Robotics. The PhD candidate will work with the Professor Alessandro Di Nuovo and his team, who have been awarded funding by the EPSRC for his research in the field. We are looking for an outstanding student to work with the team of a new EPSRC project. The research will pioneer the new developmental … [View More]neuromorphic paradigm, which will be a synergic combination that will go beyond the limitations of the individual paradigms: neuromorphic computing will provide efficient brain-like resources able to process a more accurate representation of the real world, meanwhile developmental robotics will deliver the missing learning mechanisms for complex applications of neuromorphic spiking neural networks. The short-term objective is to demonstrate feasibility and lay the foundation of a biologically plausible framework to simulate the human-like learning process of numerical and abstract cognition, a fundamental characteristic of human intelligence. The team long-term goal is to create an artificial mind for robots that 'grows up' like a child's brain. This will be underpinned by neuromorphic computing which emulates the deep-lying architecture of the brain and will allow it to interpret and adapt to situations. As well as enabling the creation of robots with a human-like ability to reason, behave and interact the creation of an artificial mind will boost research in life sciences disciplines such as neuroscience by allowing researchers to run biologically realistic simulations to test theories. By simulating information on the inner workings of the brain that could not otherwise be detected, it could enhance our understanding of neurodevelopmental and learning disorders and lead to new treatments. Eligibility Information on entry requirements can be found here<https://www.findaphd.com/common/clickCount.aspx?theid=147190&type=184&DID=6…> The ideal candidate should have a Masters degree in Neuromorphic Computing, Computational Neuroscience, Machine Learning, or closely related disciplines in AI and Robotics, excellent programming skills and experience in interdisciplinary research. How to apply Your application should be emailed to industry-innovation-admissions(a)shu.ac.uk<javascript:void(0)> Any interested candidates must contact the lead academic, Prof. Alessandro Di Nuovo, a.dinuovo(a)shu.ac.uk<javascript:void(0)>, to discuss your application. The application should explain how the candidate knowledge, skills and experience are relevant to the project short and long-term objectives. For information on how to apply please visit https://www.shu.ac.uk/research/degrees<https://www.findaphd.com/common/clickCount.aspx?theid=147190&type=184&DID=6…> ________________________________ Funding Notes The PhD studentship provides tuition fees at UK level and a maintenance bursary at the UK Research Councils' national minimum doctoral stipend rate (£17,668 for 2022/23). The scholarship is available for three years of full-time. ________________________________ References Di Nuovo, A., McClelland (2019). Developing the knowledge of number digits in a child-like robot. Nature Machine Intelligence, 1(12), 594-605. Di Nuovo, A., & Jay, T. (2019). Development of numerical cognition in children and artificial systems: a review of the current knowledge and proposals for multi-disciplinary research. Cognitive Computation and Systems, 1(1), 2-11. Di Nuovo, A., & Cangelosi, A. (2021). Abstract Concept Learning in Cognitive Robots. Current Robotics Reports, 2(1), 1-8. Roy, Jaiswal, Panda, (2019). Towards spike-based machine intelligence with neuromorphic computing. Nature, 575(7784), 607-617. Krichmar (2018). Neurorobotics-A Thriving Community and a Promising Pathway Toward Intelligent Cognitive Robots. Frontiers in Neurorobotics, Vol. 12, p. 42. Furber (2016). Large-scale neuromorphic computing systems. Journal of Neural Engineering, 13(5), 51001. Sengupta, et al. (2019). Going deeper in spiking neural networks: VGG and residual architectures. Frontiers in Neuroscience, 13, 95. Quax, D'Asaro,van Gerven, (2020). Adaptive time scales in recurrent neural networks. Scientific Reports, 10(1), 11360. [View Less]

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ANNOUNCEMENT: comp-neuro has moved to new host
by Erik De Schutter Jan. 7, 2023

Jan. 7, 2023

Dear comp-neuro subscriber, I am glad to announce that the comp-neuro mailing list has moved to a new home. This was necessary because the previous set-up became increasingly hard to maintain since I left the University of Antwerp. As a consequence it became difficult for aspirant members to subscribe and mails were sometimes delayed. The mailing list has now moved to a cloud based home and runs a more recent version of the software. I expect this will provide a stable solution with a better … [View More]

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CFP: FLAIRS-36, Neural Networks and Data Mining Special Track, Clearwater Beach, Fl, May 14-17, 2023
by David B Nov. 30, 2022

Nov. 30, 2022

FLAIRS-36 Clearwater Beach, Florida, USA, May 14-17, 2023 Neural Networks and Data Mining Special Track Abstract submission deadline: February 6, 2023 Paper submission deadline: February 13, 2023 Notifications: March 13, 2023 Camera ready version due: April 10, 2023 The Florida Artificial Intelligence Research Symposium (FLAIRS) is a medium-sized interdisciplinary AI conference which is noted for its double-blind reviewing, free tutorials, and beautiful venues. This special track will be … [View More]devoted to neural networks and data mining with the aim of presenting new and important contributions in these areas. Papers and contributions are encouraged for any work related to neural networks, data mining, or the intersection thereof. Topics of interest may include (but are in no way limited to): 1. Applications such as Pattern Recognition, Control and Process Monitoring, Biomedical Applications, Robotics, Text Mining, Diagnostic Problems, Telecommunications, Power Systems, Signal Processing; Intelligence analysis, medical and health applications, text, video, and multi-media mining, E-commerce and web data, financial data analysis, cyber security, remote sensing, earth sciences, bioinformatics, and astronomy. 2. Algorithms such as new developments in Back Propagation, SVM, Deep Learning, Ensemble Methods, Kernel Approaches; hybrid approaches such as Neural Networks/Genetic Algorithms, Neural Network/Expert Systems, Causal Nets trained with Backpropagation, and Neural Network/Fuzzy Logic. 3. Modeling algorithms such as hidden Markov models, decision trees, neural networks, statistical methods, or probabilistic methods; case studies in areas of application, or over different algorithms and approaches. 4. Graph modeling, pattern discovery, and anomaly detection. 5. Feature extraction and selection. 6. Post-processing techniques such as visualization, summarization, or trending. 7. Preprocessing and data reduction. 8. Knowledge engineering or warehousing. Papers dealing with Cloud-based unstructured data or tool suites, such as TensorFlow, PyTorch, Mahout, or Apache Spark, are also encouraged. Submission Guidelines Submitted papers must be original, and not submitted concurrently to a journal or another conference. Double-blind reviewing will be provided, so submitted papers must use fake author names and affiliations. Papers must follow the FLAIRS template guidelines ( https://www.flairs-36.info/call-for-papers) and be submitted as a PDF through the EasyChair conference system. (Do NOT use a fake name for your EasyChair login; your EasyChair account information is hidden from reviewers.) FLAIRS will not accept any paper which, at the time of submission, is under review for or has already been published or accepted for publication in a journal or another conference. Authors are also required not to submit their papers elsewhere during FLAIRS's review period. These restrictions apply only to journals and conferences, not to workshops and similar specialized presentations with a limited audience and without archival proceedings. Authors will be required to confirm that their submissions conform to these requirements at the time of submission. Conference Proceedings Papers will be refereed and all accepted papers will appear in the conference proceedings. Program committee: Track Co-Chairs: David Bisant, Central Security Svcs, bisant(a)umbc.edu Steven Gutstein, Army Research Laboratory, s.m.gutstein(a)gmail.com William Eberle, Tennessee Tech University, weberle(a)tntech.edu Program Committee Members: Martin Atzmueller (University of Kassel, Germany) Juan Banda (Montana State University, USA) Lori Bogren (Verizon Business Solutions, USA) Sergei Dolenko (D.V.Skobeltsyn Inst of Nuc Phys, M.V.Lomonosov Moscow St Univ) Yoni Fridman (Verizon Business Solutions, USA) Olac Fuentes (University of Texas at El Paso, USA) Hyoil Han (Marshall University, USA) Sheikh Rabiul Islam (University of Hartford, USA) Mike James (iProgrammer, United Kingdom) Jacek Kukluk (Dana-Farber/Harvard Cancer Center, USA) Katrina Kutchko (Verizon Business Solutions, USA) Prabin Lamichhane (Mastercard, USA) Lenin Mookiah (eBay, USA) Ramesh Paudel (George Washington University, USA) Roberto Santana (University of Basque Country, Spain) Hujun Yin (University of Manchester, UK) Further Information Questions regarding the Data Mining Special Track should be addressed to the track co-chairs: David Bisant, Central Security Svcs, bisant(a)umbc.edu Steven Gutstein, Army Research Laboratory, s.m.gutstein(a)gmail.com William Eberle, Tennessee Tech University, weberle(a)tntech.edu Invited Speakers To be announced Conference Web Sites Paper submission site: https://www.flairs-36.info/submissions FLAIRS-36 conference web page: https://www.flairs-36.info/ Florida AI Research Society (FLAIRS): https://www.flairs.com [View Less]

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New book on Neurorobotics
by Jeffrey L Krichmar Nov. 29, 2022

Nov. 29, 2022

Dear Colleagues, Our book on Neurorobotics is now published. Please pick up a copy :) Happy reading! Jeff ----------- Neurorobotics: Connecting the Brain, Body, And Environment, The MIT Press. Authors: Tiffany J. Hwu and Jeffrey L. Krichmar Neurorobotics is an interdisciplinary field that draws on artificial intelligence, cognitive sciences, computer science, engineering, psychology, neuroscience, and robotics. Because the brain is closely coupled to the body and situated in the … [View More]

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PhD positions in the area of intracortical visual prostheses
by David Rotermund Nov. 29, 2022

Nov. 29, 2022

The Computational Neurophysics lab at the University of Bremen headed by Dr. Udo Ernst offers - under the condition of job release - at the earliest possible date a position until 30.09.2024: *Research Assistant in Computational Neuroscience (f/m/d)* German federal pay scale E13 TV-L (65 %) for the research project *I-See2 - Improving Intracortical Visual Prostheses Using Complex Coding and Spontaneous Activation States* The lives of many individuals are strongly impaired by missing … [View More]the sense of vision. One putative option to help them are cortical prostheses. Such devices record images from our environment, encode this information into the 'language' of the brain, and stimulate neuron populations in the visual system for creating a corresponding percept. I-See2 (www.isee.uni-bremen.de) investigates new principles for building cortical prostheses in an international group with researchers from Canada, Switzerland and Germany. Your position will be at the heart of the project in Bremen, where computational methods are developed and data from our partner labs comes together. You will perform modelling of visual information processing, analysis of data from electrophysiological multielectrode recordings and optical voltage imaging, and be involved in model-driven visual stimulus generation for animal and human experiments. The position comes with direct supervision by the principal investigators and project coordinators Dr. David Rotermund and Dr. Udo Ernst. *Requirements:* Ideal candidates have a master's degree in Computational Neurosciences, Physics, Computer Sciences or in related fields. They must have a strong background in neural networks, dynamical systems, mathematics and/or data analysis, and be experienced in programming (preferably in Python/Matlab). Above all, they must have a strong motivation, a sense for responsibility, a distinct desire to learn, and the ability to proactively collaborate in an international research environment. Fluency in English is required (both written and spoken). The Computational Neurophysics Lab offers a good working atmosphere, direct involvement in international research and attractive facilities. The university is family-friendly, diverse and sees itself as an international university. We therefore welcome all applicants regardless of gender, nationality, ethnic and social origin, religion/belief, disability, age, sexual orientation and identity. As the University of Bremen intends to increase the proportion of female employees in science, women are particularly encouraged to apply. In case of equal personal aptitudes and qualification priority will be given to disabled persons. Please explicitly address each of the specified requirements in the application. Detailed instructions are described below. Please send your application documents (motivation letter, CV, copy of your degree certificates including high school, list of skills, awards, publications, contact details of two academic reference) until December 9th, 2022 by indicating the job id A325/22 to: University of Bremen FB1 Computational Neurophysics lab Secretary of Dr. Udo Ernst Mrs Agnes Janßen Hochschulring 18, Cognium D-28359 Bremen Tel.: +49 421 218 62000 or in electronic form in a summarized PDF file via e-mail: ajanssen(a)neuro.uni-bremen.de. For questions of the research project please contact: Dr. Udo Ernst, E-Mail: udo(a)neuro.uni-bremen.de See also for general information on this topic: http://www.isee.uni-bremen.de _Detailed instructions for applicants_ Your application must comprise: *Motivation letter* Your 1-2 page essay should reply the following questions: • What is your background? In which fields have you worked before and how do you think this can be useful for the present job? • What attracts you to the field of computational neuroscience? • Which problem(s) in computational neuroscience are you most interested in? • What is your motivation to join our project? • What are your plans for your future career? *Curriculum Vitae* Send a classical tabular CV with your contact details, and all stages of education and employment. *List of skills, awards, publications* List your skills, especially proficiency in languages (including the level of proficiency), that you think might be useful for the job. Also list awards you might have got and peer-reviewed papers, in case there are some. *Contact details of two academic references* One of the references should be your MSc advisor. Please contact the references prior to listing their names so that they are not surprised if they get contacted. Your application can be in English or German, whatever language you are more familiar with. -- *Dr. David Rotermund* *University of Bremen* Institute for Theoretical Physics Faculty 01 Physics/Electrical Engineering Hochschulring 18, D-28359 Bremen Cognium, room 2450 Tel. +49 421 218-62003 Fax +49 421 218-62014 davrot(a)neuro.uni-bremen.de www.neuro.uni-bremen.de <https://www.neuro.uni-bremen.de> www.isee.uni-bremen.de <https://www.isee.uni-bremen.de> [View Less]

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Fwd: INCF in Google Summer of Code (GSoC) 2023: call for mentors and project ideas
by Malin Sandström Nov. 29, 2022

Nov. 29, 2022

Dear all, ---- please forward this call to potentially interested mentors in your network! --- INCF will apply to be a mentor organization in Google Summer of Code <https://summerofcode.withgoogle.com/> for the 13th time running. Important: Interested mentors need to contact us on gsoc(a)incf.org as early as possible with a declaration of interest and a short summary of the intended project. The deadline for expressions of interest is January 10. Full project descriptions need to … [View More]be submitted by January 17. We are calling for open source software development project ideas with some sort of neuro connection - fixes or extensions to big/broadly applicable or small/niche tools used by neuroscience researchers, efforts and initiatives in the broad field of computational neuroscience. If your project supports or implements INCF endorsed standards or best practices <https://www.incf.org/resources/sbps>, we especially encourage you to apply. NB: There have been some changes to the program in recent years. These are the conditions for the 2023 program: - Flexibility in project lengths: a project can run for a duration of 10-22 weeks. The standard length is 12 weeks, but projects can be planned for a longer duration at the start, and they can be extended (by the org admin) on request during the program. - Choice of project time commitment: a project can be one of two sizes, either large (350 h) or medium (175 h). Google will want to us to apply with a good mix of large and medium project sizes. To give us a good chance of achieving a good mix, everyone submitting at least two project ideas will be asked to include both half-time and full-time projects (or at least one flexible project where the duration can be either large or medium, to be decided by mentor and contributor). - Contributions are *open to students* AND to *beginners in open source* software development. Also, the usual reminder: there is no guarantee that INCF will be accepted as a mentoring organization this year; Google announces the accepted organizations in February. Please be clear with this in your communication with potential contributors. The timeline will be a bit earlier than last year. Org applications will open January 23 and close February 7, with accepted organizations announced February 22. We aim to have a live Project Ideas list latest mid January. Reminder: Interested mentors need to contact us on gsoc(a)incf.org as early as possible with a declaration of interest and a short summary of the intended project. The deadline for expressions of interest is January 10. Full project descriptions need to be submitted by January 17. ________________________________ *Submission instructions* Each project idea submission should come by email to gsoc(a)incf.org and contain: 1) An informative title with relevant keywords (good-to-have: name of tool/project, name of programming language(s) or tools used) 2) A project description including a brief general intro, motivation, aims, scope and skills/skill level needed. Please make sure to clearly state - the planned effort (175 h, 350h or flexible) - the intended skill level (beginner, novice, intermediate, advanced) - the list of prerequisite skills the contributor will need to have - 2-5 tech keywords (Python, C++, Java, SQL, REST, CUDA, ...) For submissions with two or more project ideas, please include at least one project of each size (175 or 350 hours) or at least *one *project idea with flexible duration. 3) Name and email address of at least one lead mentor + one named co-mentor/backup mentor (a person who would be able and willing to back the main mentor up in mentoring in case something unforeseen happens). There can be more than one lead mentor, as long as you are internally clear on who does what. 4) Any planned longer absences during the lead up/student interaction period (February - April) or the project period (May - August), and your plan for covering them. 5) Format: your choice - txt, doc, docx, pdf or a link to a webpage with the full description(s). Anything that can be copied and pasted! Best regards, Malin Sandström -- Malin Sandström, PhD Community Engagement Officer malin.sandstrom(a)incf.org ORCID: 0000-0002-8464-2494 International Neuroinformatics Coordinating Facility Karolinska Institutet Nobels väg 15 A SE-171 77 Stockholm Sweden http://www.incf.org -- Malin Sandström, PhD Community Engagement Officer malin.sandstrom(a)incf.org ORCID: 0000-0002-8464-2494 International Neuroinformatics Coordinating Facility Karolinska Institutet Nobels väg 15 A SE-171 77 Stockholm Sweden http://www.incf.org -- Malin Sandström, PhD Community Engagement Officer malin.sandstrom(a)incf.org ORCID: 0000-0002-8464-2494 International Neuroinformatics Coordinating Facility Karolinska Institutet Nobels väg 15 A SE-171 77 Stockholm Sweden http://www.incf.org [View Less]

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Two open postdoctoral positions at Temple University
by Gillian Queisser Nov. 28, 2022

Nov. 28, 2022

Position 1: Computational Neuroscience (https://www.mathjobs.org/jobs/list/21518<https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.mathj…>) The Department of Mathematics, Temple University, is inviting applications for a non-tenure-track Research Assistant Professor position. The appointment is for four years, to start on July 1st, 2023. This position is part of a US-German Collaboration toward a biophysically principled network model of transcranial magnetic … [View More]stimulation. The ideal candidate will have profound knowledge of numerical and computational methods for solving partial differential equations, excellent C++ programing skills and an interest in neuroscience/life science applications. The position also carries a teaching load of one class per semester. Applications should be be submitted via mathjobs.org, and include: the standard AMS Cover Sheet for Academic Employment, a cover letter, a curriculum vitae, a statement about current and future research, and a teaching statement. A complete application will also include at least four letters of recommendation, one of which addressing the candidate’s teaching qualifications. Review of applications will begin on January 1, 2023 and continue until the position is filled. Temple University is an Affirmative Action/Equal Opportunity Employer, and is committed to increasing the diversity of its faculty. We especially encourage applications from women, minorities, and other under-represented groups in the mathematical sciences. The Department of Mathematics at Temple University abides by the AMS postdoctoral offer response date guidelines. Position 2: Computational Mathematics (https://www.mathjobs.org/jobs/list/21570<https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.mathj…>) The Department of Mathematics, Temple University, is inviting applications for a postdoctoral position. This is a non-tenure-track appointment. The appointment is for four years, to start on July 1st, 2023. This research position is part of a US-German Collaboration toward a biophysically principled network model of transcranial magnetic stimulation. The ideal candidate will have profound knowledge of numerical and computational methods for solving partial differential equations (PDEs), and an interest in developing mathematical theory and numerical methods for solving nonlinear PDEs on complex domains with nonlinear interface conditions. The position also carries a teaching load of one course per semester. Applications should be submitted via mathjobs.org, and include: the standard AMS Cover Sheet for Academic Employment, a cover letter, a curriculum vitae, a statement about current and future research, and a teaching statement. A complete application will also include at least four letters of recommendation, one of which addressing the candidate’s teaching qualifications. Review of applications will begin January 1, 2023 and continue until the position is filled. Temple University is an Affirmative Action/Equal Opportunity Employer, and is committed to increasing the diversity of its faculty. We especially encourage applications from women, minorities, and other under-represented groups in the mathematical sciences. The Department of Mathematics at Temple University abides by the AMS postdoctoral offer response date guidelines. ————————————————— Gillian Queisser Department of Mathematics Temple University 1805 N Broad Street Philadelphia, PA 19122-6094, USA [View Less]

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