June 2019 - Comp-neuro - lists.cnsorg.org

Full-time and Internship positions at Apple
by Burak Yildiz 23 Jun '19

23 Jun '19

We have a full-time position and an internship position in Computational Neuroscience at Apple in the San Francisco Bay Area. It's a rare opportunity to do neuroscience research in industry! Please apply directly through Apple's website. - Computational Neuroscientist / Machine Learning Scientist (Full-time) https://jobs.apple.com/en-us/details/200071090/computational-neuroscientist… - Quantitative Systems Neuroscientist PhD Intern (6 months starting from September 2019) https://jobs.apple.com/en-us/details/200059097/quantitative-systems-neurosc… Burak Yildiz Sr. Research Scientist at Apple

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postdoctoral position announcement
by Yuri Dabaghian 20 Jun '19

20 Jun '19

*Job Title: * *Postdoctoral Associate in Neural Circuits of Learning and Memory* NIH-funded postdoctoral positions are immediately available to study neural circuit mechanisms of learning and memory and their involvements in neurological disorders. Successful candidates will a) design and perform in vivo electrophysiological experiments that record a large number of single neurons in rats performing behavioral tasks, in combination with optogenetic, pharmacological and computational approaches, and b) carry out extensive, in-depth computational analyses of the recorded data and develop of data-driven models of neuronal network dynamics during spatial learning. Experimental position will be based in the laboratory of Dr. Daoyun Ji at Baylor College of Medicine, which conducts high-quality hypothesis-driven research on exciting questions of how specific memory representations are formed, recalled and consolidated, which aspects of memory processing are impaired in neurodegenerative diseases and how they can be rescued at the neural circuit level. Computational and modeling position, focusing on recently developed methods of data analyses, will be based in the laboratory of Dr. Yuri Dabaghian the Department of Neurology at the University of Texas Houston, McGovern Medical School. A Ph.D. in basic sciences/engineering or equivalent is required. Candidates with background in neuroscience, physical sciences, mathematics, and/or engineering are encouraged to apply. Previous experiences in data analyses, electrophysiology, animal behavior, and/or optogenetics using transgenic models or viral injections are preferred, but not required. We are looking for scientists who share our research interests and who are motivated by exciting science and eager to learn new skills. To apply, please send application materials including a detailed CV, cover letter, and contact information of 3 references to Profs. D. Ji (dji(a)bcm.edu) and Dr. Yuri Dabaghian (yuri.a.dabaghian(a)uth.tmc.edu). The position is available immediately, until filled. *Minimum Education: *Ph. D. in basic sciences or engineering. *Minimum Job Experience:* None. *Additional Information:* https://www.bcm.edu/research/labs/daoyun-ji https://med.uth.edu/neurology/faculty/yuri-a-dabaghian-phd/ Send application and inquiries to yuri.a.dabaghian(a)uth.tmc.edu and dji(a)bcm.edu. *Job Category*: Postdoctoral Fellow/Associate *Required Documents*: CV, cover letter, and contact information of 3 references *Optional Documents*: None

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Job opening at predoctoctoral level @ Madrid. Machine Learning Human Brain Aging Project
by Jaime Gomez-Ramirez 17 Jun '19

17 Jun '19

One predoctoctoral position is available at Fundación CIEN (Centre for Research in Neurodegenarative Diseases) in Madrid, Spain ( https://www.fundacioncien.es/). PILEP +90 “Longevity research program Spain-Portugal +90 (PILEP+90)”. PILEP +90 is an International Research Project including the University of Braga (Portugal), University of Southern Denmark (Denmark) and Fundación CIEN (Madrid, Spain). The candidate will work in the PILEP +90 project "Application of machine learning to study factors of healthy and pathological aging”, led by Jaime Gómez-Ramírez at Fundación CIEN. The researcher will be affiliated with Big Data Research & Brain Analytics Unit, Area of NeuroImaging at Fundación CIEN. The goal of this project is to use state-of-the-art machine learning to understand human brain aging. In particular, the project will study healthy subjects 90 years or older. For this purpose, the project lead will have access to magnetic resonance imaging (MRI), lifestyle, cognitive performance and genetic data of the participants in the study. Fundación CIEN is home to a multidisciplinary community of scientists in neuroscience, with special focus on aging, both healthy and pathological. The researcher will have access to a large MRI dataset collected in the last 8 years and will collaborate with the international partners in the project. Qualifications: Candidates should have university degree in a relevant field (e.g, or computer science, physics, engineering, psychology or mathematics) by the start date. The candidate should have experience in computer programming (Python, Matlab, C) and statistical data analysis. The ideal candidate will have a publication record that includes computational modeling and empirical data analysis and will be interested to apply or be enrolled in a PhD program. The appointment is for one year, the salary is 23.400 euros gross before taxes. The contract includes contributions to the Spanish social Security system, which covers for illness, injuries and accidents at work, unemployment, maternity and paternity leave. The selection process is open for candidates that already have the legal right to work in the EU. We especially encourage applications from women and members of minorities that are underrepresented in science. The position is available immediately. The deadline to apply is the 25th of June 2019. Applicants are invited to submit their applications at https://ciberned.cientifis.com/Publica/Convocatorias/Solicitantes/Solicitan… . Applicants are requested to send in CV, degree certificate, cover letter (including a brief summary of previous research accomplishments and future plans) with two to three referee names. Applicants may contact Dr. Gomez-Ramirez directly (email: jgomez(a)fundacioncien.es) for further information. More information about the project can be found at https://cenie.eu/en/blogs/pilep90/application-data-mining-techniques-identi… Jaime Gomez-Ramirez, PhD Big Data Research & Brain Analytics Unit, Area of NeuroImaging Centre for Research in Neurodegenerative Diseases Fundación Reina Sofia Valderrebollo, 5 Madrid, Spain

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2 PhD Positions at NTNU (Norway)
by Benjamin Dunn 17 Jun '19

17 Jun '19

Two PhD positions (1 for theory and 1 for experiments) are currently available to characterize the population neural activity in normal and Alzheimer’s disease animals. This is part of a collaboration between the Kavli Institute for Systems Neuroscience, NTNU and the Department of Mathematics, NTNU. Please apply here: https://www.jobbnorge.no/en/available-jobs/job/170189/2-phd-fellowships-in-… The deadline is July 1st! Ben (Benjamin Dunn)

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Ph.D. positions in Neuromorphics and Robotics at KTH Stockholm
by Jörg Conradt 17 Jun '19

17 Jun '19

Here a call for open Ph.D. positions in Neuromorphics and Robotics (algorithms and hardware), exact project flexible. Application deadline July 12. https://www.kth.se/en/om/work-at-kth/lediga-jobb/what:job/jobID:274694 Would you know of anyone interested? Please forward. Any information needed? Please anyone inquire informally by brief email. Information on our work here ("old and somewhat outdated" pages from my former group): http://tum.neurocomputing.systems/en/research/index.html Thank you! I am very much looking forward to increasing the group at KTH. Jörg [Kth Logo] Jörg Conradt Prof. Dr. KTH Royal Institute of Technology Computational Science and Technology School of Electrical Engineering and Computer Science Lindstedtsvägen 5, SE-114 28 Stockholm, Sweden Phone: +46-8-790 6231 Email: conr(a)kth.se<mailto:conr@kth.se>, Web: www.kth.se<http://www.kth.se/>

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Full Professorship Theoretical Systems Neuroscience
by Carsten Mehring 13 Jun '19

13 Jun '19

The Faculty of Biology of the University of Freiburg invites applications for a Full Professorship (W 3) for Theoretical Systems Neuroscience at the Department of Biology III to be filled as soon as possible. This professorship is also particularly suitable for highly qualified early career researchers. The future job holder should be internationally renowned for the investigation of complex brain functions using modern theoretical neuroscientific approaches. In this context, investigations at the systems level using modern approaches from the theoretical and/or computational neurosciences are particularly welcome. Thematically, the professorship should focus on one of the following areas: learning mechanisms, decision-making processes, sensory systems, sensorimotor integration/control, or the mechanistic understanding of neuronal networks in functional and dysfunctional brains. Collaborations with the experimental and theoretical neuroscientific research groups and research centres established in Freiburg are very welcome. Further information on neuroscientific research in Freiburg can be found on the website www.neuro.uni-freiburg.de <http://www.neuro.uni-freiburg.de/> as well as on the homepages of the Faculty of Biology www.bio.uni-freiburg.de <http://www.bio.uni-freiburg.de/> and the Bernstein Center Freiburg www.bcf.uni-freiburg.de <http://www.bcf.uni-freiburg.de/>. Teaching contributions to the MSc Neuroscience, the BSc and MSc Biology, the Master of Education Biology as well as contributions to the organization of the MSc Neuroscience are expected. Prerequisites for the employment of Professors are a university degree, an outstanding dissertation and an excellent publication record. Substantial achievements and experience in academic research and teaching, at the level of a Habilitation according to the German academic system, are expected. We are particularly pleased to receive applications from women for the position advertised here. The following application documents are to be submitted: o Curriculum vitae o Certificates of degrees and academic qualifications as well as references o Complete list of papers and invited lectures specifying the 10 most important publications Please send your application including supporting documents mentioned above and the application form (http://www.zuv.uni-freiburg.de/formulare/bewerbungsbogen_englisch.pdf <http://www.zuv.uni-freiburg.de/formulare/bewerbungsbogen_englisch.pdf>) citing the reference number 00569, by 31.07.2019 at the latest. Please send your application to the following address in electronic form: The Dean of the Faculty of Biology, Schänzlestr. 1, D-79104 Freiburg. Via e-mail: application(a)biologie.uni-freiburg.de <mailto:application@biologie.uni-freiburg.de>Further information on the appointment procedure can be found in the Procedure Governing Appointments to Professorships at the University of Freiburg, available under http://www.zuv.uni-freiburg.de/formulare/berufungsleitfaden-en.pdf <http://www.zuv.uni-freiburg.de/formulare/berufungsleitfaden-en.pdf#_blank>

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Post-doctoral Fellow Advertisement
by Zaghloul, Kareem (NIH/NINDS) [E] 13 Jun '19

13 Jun '19

Hi, I would like to post the following ad for a post-doctoral position to the computational neuroscience listserv: Position Title Post-doctoral position in human intracranial physiology and human memory Position Description The National Institute of Neurological Disorders and Stroke is seeking a full-time post-doctoral position focused on understanding the neural correlates of human memory. This position involves studies focused on analyzing and manipulating human intracranial electrophysiological signals, including single-unit activity, local field potentials, and intracranial EEG (iEEG), captured from participants with drug resistant epilepsy and from participants receiving deep brain stimulation surgery. Post-doctoral fellows will join a laboratory aimed at understanding the neural mechanisms that underlie human episodic memory formation and decision making and at developing novel and innovative techniques to directly communicate with those circuits. We are seeking candidates that are highly creative, motivated, and independent with a Ph.D. in neuroscience, biomedical engineering, or a related field. Candidates must have a strong research background, with a record of relevant publications. Candidates will be encouraged and expected to participate in independent laboratory research, and will be expected to write scholarly manuscripts. Candidates must be able to lead and work well in a team. Candidates should have strong computational, quantitative, and/or engineering skills, with proficiency in developing custom code (Matlab, Python, etc.) for data analysis preferred. Past medical research is not required, but candidates must be willing to perform experiments in a clinical setting. Candidates will interact with clinical staff, graduate students, research fellows, and must have excellent spoken and written English skills. Applicants should submit a brief statement of research activities and interests, a current CV, and names and contact information of at least three references. Salary will be commensurate with experience and accomplishments. Applicants who will be attending the Society for Neuroscience (Chicago, IL) conference can arrange for a meeting with the Principal Investigator, Dr. Kareem Zaghloul. To arrange a meeting with the PI and to send materials required for consideration for this appointment please contact Dr. Zaghloul at:zaghloulka@mail.nih.gov<mailto:zaghloulka@mail.nih.gov>. Employer Name Kareem A. Zaghloul, National Institute of Neurological Disorders and Stroke Position Location Bethesda, MD Disclaimer NIH, an agency of DHHS, is an equal opportunity employer. All employees are subject to background investigation. The NIH is dedicated to building a diverse community in its training and employment programs. If you could post this ad for me and confirm that everything is ok, I would appreciate it. Thank you, Kareem Kareem A. Zaghloul, MD, PhD Surgical Neurology Branch National Institute of Neurological Disorders and Stroke, NIH Bldg 10, Rm. 3D20 10 Center Drive Bethesda, MD 20892-1414 O: 301-594-8114 F: 301-402-0380

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TVB Node#9 Workshop - Warsaw, August 31
by Julie Courtiol 12 Jun '19

12 Jun '19

*The Virtual Brain: Node#9 Workshop* 31 August 2019 Warsaw, Poland This workshop will explain the fundamental principles of full brain network modelling using the open-source neuroinformatics platform The Virtual Brain (TVB) <https://www.thevirtualbrain.org/>. This simulation environment enables the biologically realistic modelling of brain network dynamics using connectome-based approaches across different brain scales. Researchers from different backgrounds can benefit from an integrative software platform including a simulation core written in Python and a supporting framework for data management. The workshop is organized with interleaved oral presentation and hands-on sessions. The hands-on sessions will let you immediately apply the concepts from the lectures to your simulations in TVB. The TVB Node#9 is an official training course of the Neuroinformatics2019 <https://www.neuroinformatics2019.org> holding on September 1-2, also in Warsaw. Registration and further information: bit.ly/tvb-node9 Contact: julie.courtiol(a)charite.de Best regards, Julie -- Julie Courtiol Charité Universitätsmedizin Berlin

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BRAIN Theories postdocs to develop history dependent theories across scales.
by Fidel Santamaria 11 Jun '19

11 Jun '19

Two Postdoctoral positions to develop a framework to study history dependent activity across scales and species. The objective of this NIH BRAIN Theories project is to develop a unified theoretical framework to study history dependence across the nervous system. This is based on our previous work on using fractional order differential equations to study reaction diffusion and spiking dynamics in single neurons. In this project, we will further extend our theory to determine variability in cortical neurons, understand the effect of history dependence on network dynamics, coding, and information rates; and will apply our knowledge at the cellular level to predict and understand sensory processing in intact animals. This is an expansive project, with multiple collaborations. The fitting candidates will have the opportunity to interact with laboratories at McGill University, in Canada; Max Planck Institute for Dynamics & Self Organization, in Germany; and the Allen Brain Institute. Your theoretical background could be in dynamical systems, applied math, or computational neuroscience. Having knowledge of fractional order differential equations is a plus, but not required. Technically, you need to know Matlab. Knowledge of python and NEURON are a plus. You have to have a fundamental knowledge of neuroscience or demonstrate a willingness to catch up. The laboratory has all the necessary resources, from high end CPU/GPU servers, to local clusters, and access to the largest supercomputers and cloud services through the Texas Advanced Computer Center and the Chameleon Cloud. The laboratory also offers an interdisciplinary environment where experiments in cerebellar research are combined with computational and theoretical approaches. We just acquired a new multi-photon microscope with spatial light modulation capabilities that will allow us to interrogate the cerebellum in ways not possible before. San Antonio is one of the best places to live in the US. It is one of the most affordable large cities in the country, the weather is mild for most of the year, and you can afford to have a nice life. If interested, send a cover page, CV, and list of three references to fidel.santamaria(a)utsa.edu -- Fidel Santamaria, PhD Associate Professor Department of Biology One UTSA circle University of Texas at San Antonio, San Antonio, TX 78249 Office: (210) 458-6910 Lab: (210) 458-6982 Fax: (210) 458-5658 Office/Lab Location: BSB 1.03.30 http://www.utsa.edu/santamarialab/index.htm

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Official PGENESIS 2.4 release and GENESIS 2.4 Update
by Dave Beeman 10 Jun '19

10 Jun '19

I would like to announce the Official Release of PGENESIS 2.4 along with a significant update to GENESIS 2.4. GENESIS is implemented with an object-oriented design that groups related object and command definitions into separately compiled libraries. Parallel GENESIS (PGENESIS) adds a library with a "postmaster" object to the usual usual GENESIS objects and commands. This allows a GENESIS simulation (e. g. a large network model) to be split into many MPI processes that communicate through the postmaster. The November 2014 release of GENESIS 2.4 was intended to be the last packaged GENESIS 2 distribution for download from the GENESIS web site (http://genesis-sim.org/GENESIS). As GENESIS is user-supported, rather than centrally developed, updates to GENESIS and PGENESIS are now obtained from the Repository for Continued Development of the GENESIS 2.4 Neural Simulator (https://github.com/genesis-sim/genesis-2.4). The object-oriented design and organization not only fosters the community development of neural models, but of the simulator itself. This new mutually-developed release of PGENESIS is such an example. As users have continued to contribute new libraries and improvements, there has been an increased use and extension of GENESIS and PGENESIS for its original purpose of realistically modeling cortical networks of multicompartmental neurons on parallel computers. Recent updates to GENESIS and a merge of the GENESIS/PGENESIS development branch from the U.S. Army Research Laboratory have addressed a number of issues in order to increase its scalability for modeling very large networks on high performance computing resources, allowing for models of millions of neurons. These improvements have made it necessary for a new release of a combined package of the May 2019 GENESIS 2.4 Update and the PGENESIS 2.4 Official Release. Information about this release and downloads are available from the GENESIS web site (http://genesis-sim.org/GENESIS). The official release of PGENESIS 2.4 is much improved from the December 2014 preliminary release. Updates of GENESIS since the 2014 release allow the fast "hsolve" solver to be used with new synaptic plasticity models and measurements of cortical field potentials. The efficient delivery of spike events when hsolve is used with large network models results in increases in simulation speed by factors of 10 to 20. This release of PGENESIS 2.4 is also now available for running large-scale network simulations on supercomputers at the Neuroscience Gateway Portal (NSG). For further information, see the https://www.nsgportal.org web page. Dave Beeman

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