March 2019 - Comp-neuro - lists.cnsorg.org

The Neuron School - Basic Computational Neuroscience in Alghero - ITALY
by Sergio Solinas 05 Mar '19

05 Mar '19

**Apologies for cross-posting** [All details about this school can be found online at The NEURON School Initiative <http://neuronschool.org/>] The Department of Biomedical Sciences at the University of Sassari is excited to announce *the second edition* of *The NEURON School* on Computational Neuroscience. This *one-week* school will introduce to the use of the simulation environment NEURON and related software to build brain models starting from experimental data up to their applications. - The school will provide basic notions on experimental methods to extract and process morphological and electrophysiological data targeting their use to build computational models of single neurons and neuronal networks. - We will explore the best practices to build sound computational models of ion channels and synaptic receptors. - The school will cover how these models can be constructed based on the principles of biological tissue growth in simulations. We welcome applications from all interested full graduate, Ph.D. students, and PostDocs in a variety of fields from biology, neurobiology, and psychology, to physics, engineering, and mathematics, and industry professionals with relevant background. Applicants are expected to have a good background in their discipline, interest in neuroscience, and some knowledge (even basic) of computer programming. *Format*: Morning tutorials will be complemented with Afternoon coding sessions and Evening discussions promoted by Senior Scientists. *Date and Location:* April 29th to May 3rd, 2019 at the Porto Conte Research Center <http://www.portocontericerche.it/en> within the Science and Technology Park of Sardinia and at the Hotel Catalunya <http://www.hotelcatalunya.it/en/>, Alghero - Sardinia (ITALY). Application Deadline: 14th April 2019 Applications: Please visit *http://neuronschool.org/ <http://neuronschool.org/>*, where you can find more information regarding costs, travel, and lodging. If you have any questions about the school or the application process, please contact enrico(a)uniss.it We look forward to your registration and to welcome you in Alghero!

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Full-time research technician at the University of Vienna
by Moritz Grosse-Wentrup 04 Mar '19

04 Mar '19

Dear Colleagues: I am setting up a new research group at the University of Vienna and have an open (full time and, following a successful evaluation after one year, open-ended) position for a research technician.Besides general IT-support, the primary task of the research technician would be to maintain our EEG lab. I would appreciate if you could pass on the ad to potential candidates: https://tinyurl.com/y2ll2ak5 Informal inquiries should be sent to moritz.grosse-wentrup(a)univie.ac.at. Thanks, Moritz -- Univ.-Prof. Dr.-Ing. Moritz Grosse-Wentrup Research Group Neuroinformatics Faculty of Computer Science University of Vienna Hörlgasse 6, A-1090 Wien, Austria moritz.grosse-wentrup(a)univie.ac.at

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Fruit Fly Brain Hackathon 2019
by Yiyin Zhou 04 Mar '19

04 Mar '19

Fruit Fly Brain Hackathon 2019 FFBH 2019 <http://fruitflybrain.org/hackathons>March 20, 2019Columbia University, New York, NY 10027 The 4th Fruit Fly brain Hackathon (FFBH 2019) will be held on Wednesday, March 20, 2019. The goal of the hackathon is to bring together researchers interested in developing executable models of the fruit fly brain. In this year’s hackathon, we will focus on the FlyBrainLab <http://www.bionet.ee.columbia.edu/research/ffbo/fbl> (FBL), a newly developed interactive computing platform for studying the function of executable circuits constructed from fly brain data. The hackathon is aimed at three main groups of participants: neurobiologists, modelers and software engineers. We welcome researchers working on the fruit fly brain as well as those working on other model organisms to participate and broaden the discussion in the hackathon. The Fruit Fly Brain Hackathon 2019 is organized in conjunction with the Columbia Workshop on Brain Circuit, Memory and Computation <http://fruitflybrain.org/workshops.html> on March 21-22, 2019. Participants of the hackathon are welcome to attend the workshop. Registration is free but all participants have to register <https://ffbh2019.eventbrite.com/>. (*https://ffbh2019.eventbrite.com/ <https://ffbh2019.eventbrite.com/>*). Organizers: Tingkai Liu, Department of Electrical Engineering, Columbia University Mehmet Kerem Turkcan, Department of Electrical Engineering, Columbia University Chung-Heng Yeh, Department of Electrical Engineering, Columbia University Yiyin Zhou, Department of Electrical Engineering, Columbia University More information can be found on the hackathon website: http://fruitflybrain.org/hackathons ------------------------------------------------------------------------------ Best Regards, Yiyin Zhou, on behalf of the organizers -- Yiyin Zhou Associate Research Scientist Bionet Group: www.bionet.ee.columbia.edu Department of Electrical Engineering Columbia University

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12ᵗʰ Advanced Scientific Programming in Python in Camerino, Italy, 2—7 September, 2019
by Jakob Jordan 04 Mar '19

04 Mar '19

12ᵗʰ Advanced Scientific Programming in Python ============================================== a Summer School by the G-Node and the University of Camerino https://python.g-node.org Scientists spend more and more time writing, maintaining, and debugging software. While techniques for doing this efficiently have evolved, only few scientists have been trained to use them. As a result, instead of doing their research, they spend far too much time writing deficient code and reinventing the wheel. In this course we will present a selection of advanced programming techniques and best practices which are standard in the industry, but especially tailored to the needs of a programming scientist. Lectures are devised to be interactive and to give the students enough time to acquire direct hands-on experience with the materials. Students will work in pairs throughout the school and will team up to practice the newly learned skills in a real programming project — an entertaining computer game. We use the Python programming language for the entire course. Python works as a simple programming language for beginners, but more importantly, it also works great in scientific simulations and data analysis. We show how clean language design, ease of extensibility, and the great wealth of open source libraries for scientific computing and data visualization are driving Python to become a standard tool for the programming scientist. This school is targeted at Master or PhD students and Post-docs from all areas of science. Competence in Python or in another language such as Java, C/C++, MATLAB, or R is absolutely required. Basic knowledge of Python and of a version control system such as git, subversion, mercurial, or bazaar is assumed. Participants without any prior experience with Python and/or git should work through the proposed introductory material before the course. We are striving hard to get a pool of students which is international and gender-balanced. Date & Location =============== 2–7 September, 2019. Camerino, Italy. Application =========== You can apply online: https://python.g-node.org/wiki/applications Application deadline: 23:59 UTC, 26 May, 2019. There will be no deadline extension, so be sure to apply on time. Be sure to read the FAQ before applying: https://python.g-node.org/wiki/faq Participation is for free, i.e. no fee is charged! Participants however should take care of travel, living, and accommodation expenses by themselves. Program ======= • Version control with git and how to contribute to open source projects with GitHub • Tidy data analysis and visualization • Testing and debugging scientific code • Advanced NumPy • Organizing, documenting, and distributing scientific code • Advanced scientific Python: context managers and generators • Writing parallel applications in Python • Profiling and speeding up scientific code with Cython and numba • Programming in teams Faculty ======= • Caterina Buizza, Personal Robotics Lab, Imperial College London, UK • Jenni Rinker, Department of Wind Energy, Technical University of Denmark, Roskilde, Denmark • Juan Nunez-Iglesias, Bioimage Analysis Research Fellow, Monash University, Australia • Nelle Varoquaux, Department of Statistics, UC Berkeley, CA, USA • Pamela Hathway, Neural Reckoning, Imperial College London, UK • Pietro Berkes, NAGRA Kudelski, Lausanne, Switzerland • Rike-Benjamin Schuppner, Institute for Theoretical Biology, Humboldt-Universität zu Berlin, Germany • Stéfan van der Walt, Berkeley Institute for Data Science, UC Berkeley, CA, USA • Tiziano Zito, Department of Psychology, Humboldt-Universität zu Berlin, Germany Organizers ========== For the German Neuroinformatics Node of the INCF (G-Node), Germany: • Tiziano Zito, Department of Psychology, Humboldt-Universität zu Berlin, Germany • Caterina Buizza, Personal Robotics Lab, Imperial College London, UK • Zbigniew Jędrzejewski-Szmek, Red Hat Inc., Warsaw, Poland • Jakob Jordan, Department of Physiology, University of Bern, Switzerland For the University of Camerino, Italy: • Barbara Re, Computer Science Division, School of Science and Technology, University of Camerino Italy Website: https://python.g-node.org Contact: python-info(a)g-node.org

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Final Program of the Columbia Workshop on Brain Circuits, Memory and Computation, March 21-22, 2019
by Aurel A. Lazar 03 Mar '19

03 Mar '19

http://fruitflybrain.org/workshops.html Aurel http://www.bionet.ee.columbia.edu

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Discovering dynamic functional networks in the human neonatal brain with electric source imaging
by Steve Mehrkanoon 02 Mar '19

02 Mar '19

Dear Colleagues, We announce new findings in the human brain dynamics: Title: Discovering dynamic functional networks in the human neonatal brain with electric source imaging <http://biorxiv.org/cgi/content/short/545616v1?rss=1> https://www.biorxiv.org/content/10.1101/545616v1?rss=1 Kind regards Steve Dr Steve Mehrkanoon Senior Mathematical Neuroscientist, The University of Queensland Advance Queensland Research Fellow, Home: http://researchers.uq.edu.au/researcher/14135 [UQEmailBannerGeneric]

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EXTENSION: CNS*2019 Call for Abstracts
by Sharon Crook 01 Mar '19

01 Mar '19

The abstract submission deadline for CNS*2019 has been extended to Monday March 11, 2019, 11:00 pm Pacific Time. Please remember to renew your OCNS membership and register for the meeting prior to abstract submission. CNS*2019 Call for Abstracts Organization for Computational Neurosciences (OCNS) 28th Annual Meeting Barcelona, Catalonia, Spain July 13-17, 2019 Local Organizers: Alex Roxin, Klaus Wimmer, Albert Compte, Jaime de la Rocha, Gemma Huguet Ramon The main meeting begins the evening of Saturday July 13 and runs through Tuesday July 16. It will be preceded by a day of tutorials (Saturday July 13) and followed by workshops (Tuesday July 16 mixed with the main meeting and Wednesday July 17 workshops only). Invited Keynote Speakers: Ed Bullmore, University of Cambridge Kenji Doya, Okinawa Institute for Science and Technology Mavi Sanchez-Vives, Universitat de Barcelona Ila Fiete, University of Texas Note that one of the authors must register as sponsoring author for the main meeting before abstract submission. In case the abstract is not accepted for presentation, the registration fee will be refunded. Submitted abstracts are used for creating the program and for publication. Please follow the formatting guidelines on the submission site. Travel awards are available for student and postdoc members of OCNS. Please apply using the checkbox on the abstract submission form and note that an extended abstract is required when applying for a travel award or oral presentation format. Registration: https://ocns.memberclicks.net/index.php?option=com_mc&view=mc&mcid=form_259… Abstract Submission: https://www.cnsorg.org/cns-2019-abstract-submission For up-to-date conference information, please visit: https://www.cnsorg.org/cns-2019-quick -------------------------------------------------------------------------------------------------------------------------------- OCNS is the international member-based society for computational neuroscientists. Become a member to be eligible for travel awards and more. Visit our website for more information: http://www.cnsorg.org

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Postdoctoral position in cortical circuit modelling (Krembil Centre for Neuroinformatics)
by Etay Hay 01 Mar '19

01 Mar '19

Postdoctoral position in cortical circuit modelling (Krembil Centre for Neuroinformatics) Hay lab, at Krembil Centre for Neuroinformatics and the University of Toronto, is currently accepting applications for a postdoctoral position in using computational models to study the effects of cellular mechanisms on cortical circuit activity and brain recordings, in health and disease. We will simulate biophysical models of cortical circuits, constrained with data from rodents and humans, to study the effect of synaptic connectivity and dendritic ion channels on cortical circuit activity and processing. In turn, we will characterize the predicted signatures of the effects in measurable signals of cortical circuit activity, which will include the spatio-temporal propagation of neuronal spiking activity, LFP in different cortical layers, and EEG. The position will be up to 3 years, renewed yearly. Applicants should have strong and relevant peer-reviewed publications, particularly modelling studies of spiking neuronal networks (conductance-based or integrate-and-fire), and experience in using NEURON and Matlab. Hay lab is located at Krembil Centre for Neuroinformatics (KCNI), which is part of the Centre for Addiction and Mental Health (CAMH). The centre is fully affiliated with the University of Toronto, and is situated at the downtown campus. Neuroscience research at KCNI offers a unique environment that is both specialized and collaborative, spanning computational genomics, brain circuits, whole-brain networks, and behavior. Interested applicants should send their CV to Dr. Etay Hay, at: etay.hay(a)camh.ca Etay Hay, PhD Independent Scientist, Krembil Centre for Neuroinformatics, CAMH Assistant Professor, Department of Psychiatry, University of Toronto www.haybrainlab.com CONFIDENTIALITY NOTICE: This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies of the original message. AVIS DE CONFIDENTIALITÉ : Ce message électronique, ainsi que tout fichier qui y est joint, est reserve à l'usage exclusif du destinataire visé et peut contenir des renseignements confidentiels et privilégiés. Toute lecture, utilisation, divulgation ou distribution non autorisée est interdite. Si vous n'êtes pas le destinataire visé, veuillez en aviser l'expéditeur par retour de courriel et détruire toutes les copies du message original.

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Postdoctoral positions in computational neuroscience and artificial intelligence
by Maxim Bazhenov 01 Mar '19

01 Mar '19

Applications are invited for post-doctoral research positions in the laboratory of Dr. Maxim Bazhenov at the University of California, San Diego to study memory and learning and to develop neuroscience inspired computer algorithms capable of continual learning and adapting to the novel situations and contexts.This project involves close collaboration with the experimental laboratory of Dr. Bruce McNaughton (UC Irvine). The ultimate goal of the work is to advance the knowledge of how human and animal brains learn from experience and apply these principles to the artificial systems to enable continuous learning without catastrophic forgetting. The successful candidate will collaborate with a team of researchers to design neural network models of dynamic interactions between the hippocampus and neocortex during learning and memory consolidation in sleep and awake based on experimental data. These models will be used to derive learning principles that can be combined with advances in artificial intelligence and machine learning. An ideal candidate should have experience in computational/theoretical neuroscience and a basic knowledge of machine learning, or, alternatively, experience in machine learning algorithms and some basic knowledge of neuroscience. Experience with hierarchical learning, reinforcement learning, and/or goal-directed decision-making would be particularly helpful. The University of California offers excellent benefits. Salary is based on research experience. Applicants should send a brief statement of research interests, a CV and the names of three references to Maxim Bazhenov at mbazhenov(a)ucsd.edu -- Maxim Bazhenov, Ph.D. Professor, Department of Medicine, Neurosciences Graduate Program, UCSD, School of Medicine http://www.bazhlab.ucsd.edu/

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PhD fellowships in Neuroscience at Unipd
by Samir Suweis 01 Mar '19

01 Mar '19

The Padova Neuroscience Center (http://pnc.unipd.it/ <http://pnc.unipd.it/admission/>) is delighted to announce its second call for at least 10 fully funded PhD fellowships in Neuroscience at the University of Padova. The multidisciplinary PhD program includes research lines and methods from Imaging, Cellular, Cognitive, Translational and Computational Neuroscience. The time-frame for the application is 8th of April-10th of May 2019 (at 1 pm). The details for the application will be published on the 8th of April at: http://pnc.unipd.it/admission/ <http://pnc.unipd.it/admission/>. Stay tuned! Interested candidate can also contact me suweis(a)pd.infn.it <mailto:suweis@pd.infn.it> for further information. Please forward this message to collaborators and students. Thanks **** Padova University is one of the oldest and most prestigious universities in Europe - established in 1222. The University of Padova invests significantly in research activities and projects. Padova, is a small and beautiful town, shaped around the University. Low living costs, great food, and you can bike everywhere! Samir Suweis, Ph.D. https://impactstory.org/u/SamirSuweis <https://impactstory.org/u/SamirSuweis> @SamirSuweis Research Scientist (RTDa) LIPh Lab, Physics Department, University of Padova Tel: +39 049 827 71 74 www.pd.infn.it/~maritan/people/Samir/samir.html

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