July 2018 - Comp-neuro - lists.cnsorg.org

Post-doc at FIAS - Computational Modeling of Epilepsy: Conducting Interviews at CNS*2018
by Peter Jedlicka 11 Jul '18

11 Jul '18

Dear Comp-Neuro community, I would like to inform you that a post-doc position will be available in 2019 in the context of Frankfurt's new Center for Personalized Translational Epilepsy Research (CePTER). The project focuses on better understanding circuit changes and neuroimmune interactions during the development of epilepsy and is jointly lead by Prof. Jochen Triesch and me. I am attending the CNS*2018 in Seattle (July 13-18). If you are interested, contact me by email and attach your CV so that we can meet for an in-person interview. Best, Peter Jedlicka P.S. If you are not attending CNS, you can send your applications (single pdf file including CV, list of publications, statement of research interests and names and email addresses of three references) to jedlicka(a)em.uni-frankfurt.de and triesch(a)fias.uni-frankfurt.de. The position will be based at the Frankfurt Institute for Advanced Studies (https://fias.uni-frankfurt.de/en/) Frankfurt has a vibrant Neuroscience community and the successful candidates will work closely together with experimental labs. An ideal candidate will have obtained a PhD/Master Degree in Computational Neuroscience or closely related field and have a strong interest in applying their knowledge to problems of medical relevance. Prior experience with modeling spiking neural networks or compartmental modeling is highly desirable. Experience in modeling epilepsy, neural plasticity and neuro-immune interactions is a plus. -- Peter Jedlicka, MD, PhD Professorship for Computer-Based Modelling in the field of 3R Animal Protection Faculty of Medicine Justus-Liebig-University Rudolf-Buchheim-Str. 6 D-35392 Giessen Phone: ++49 (0)69 179 238 6269 Fax: ++49 (0)641 9941359 NeuroScience Center Clinical Neuroanatomy (Anatomy I) Goethe-University Theodor-Stern-Kai 7 D-60590 Frankfurt am Main Fax: ++49 (69) 6301 6425 Email: jedlicka(a)em.uni-frankfurt.de

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Fwd: Postdoctoral Research Associate- Neural Interfaces
by Alistair McEwan 11 Jul '18

11 Jul '18

Postdoctoral Research Associate- Neural Interfaces - Join an organisation that encourages progressive thinking - 2 year Full Time Fixed Term role with a possibility of extension. Located at Camperdown Campus - Remuneration package: $90K-96K p.a. base salary and competitive employer’s contribution to superannuation *School of Electrical and Information Engineering* *Faculty of Engineering & Information Technologies* *Reference No. 1201/0618F* *About the opportunity * Applications are invited for a *Postdoctoral Research Associate- Neural Interfaces* for long-term implantable therapy in cerebral palsy with Professors Alistair McEwan and Gregg Suaning in the Bioelectronics and Bionics research groups at the University of Sydney, Australia. The role is expected to undertake research and coordinate experimentation and performance testing of an implantable neural stimulator for the acquired brain injuries including cerebral palsy. In this project we will examine electrical stimulation as an established approach for the restoration of muscle movement, but with currently limited utility as a therapy. There are two primary causes for this: poor selectivity in the activation of desired muscles, that may result in unwanted contractions; and the co-activation of efferent (e.g. motor) and afferent (e.g. sensory) fibres. In this ex-vivo study we focus upon solving these two key issues so that electrical stimulation can become a viable therapy in the treatment of acquired brain injuries and in particular, cerebral palsy. Targeted stimulation or blocking of peripheral fibres that lead to rigidity and pain would alleviate these two major areas of unmet need in cerebral palsy. The project involves developing an ex-vivo model and collecting experimental evidence of nerve fibre selectivity for selective activation of targeted muscle groups, capacity to release hypertonic muscles and management of pain to lead to the design of an implantable device for the rehabilitation of people with cerebral palsy. We aim to achieve improved efficacy in selective activation of targeted muscle groups, provide the capacity to release hypertonic muscles and manage pain; and devise a new implantable device for the rehabilitation of people with cerebral palsy to manage muscle movement. We collaborate with labs at Harvard, Case Western, The University of Freiburg, and UCL. More information can be found here: http://sydney.edu.au/engineering/our-research/biomedical-engineering/ institute-of-biomedical-engineering-and-technology/biomedical-devices-and- instrumentation.html https://www.cerebralpalsy.org.au/sstposts/StoryId1522298671037 https://www.cerebralpalsy.org.au/sstposts/StoryId1528960251002 *About you* The University values courage and creativity; openness and engagement; inclusion and diversity; and respect and integrity. As such, we see the importance in recruiting talent aligned to these values in the pursuit of research excellence. We are looking for a *Postdoctoral Research Associate- Neural Interfaces* with: - PhD in Biomedical engineering or a similar field such as bio-electronics, bio-physics or neuroscience. - An understanding of electronics, signal processing, materials, and neurostimulation techniques. - Interest in working with a multi-disciplinary team including physiotherapists, clinicians and families living with cerebral palsy Please refer to the Candidate Information Pack for further information. To be considered, it is essential that you upload a resume and address the online selection criteria. *About us* Cerebral Palsy is the most common childhood disability with life-long impact, no cure, uncertain origins and delayed diagnosis. We work with the Cerebral Palsy Alliance research foundation to develop technology for treatment, intervention, prevention and cure. We focus on opportunities for control of muscle groups, spasticity and sensory perception including pain. While people with spinal cord injury have been the target of motor prosthesis to date there are additional challenges to explore in cerebral palsy such as developmental differences and viable afferent pathways that may convey pain and other sensory signals. We see opportunities in both central and peripheral stimulation and monitoring. Our group has a background in impedance recordings which might be used as a novel monitoring tool or to optimise stimulation patterns. We also use electrical tissue properties to better identify pathological tissue and guide electrical stimulation, electroporation and heating in the management of electrical signaling pathways. The University of Sydney is ranked number 1 in the world for physical therapy, sports therapy and rehabilitation and consistently ranks first or second in Australia for Engineering, Science and Medicine. The University is situated in the vibrant international city of Sydney close to some of the world’s best beaches and natural environments. Since our inception 160 years ago, the University of Sydney has led the research and teaching to improve the world around us. We believe in education for all and that effective leadership makes lives better. These same values are reflected in our approach to diversity and inclusion, and underpin our long-term strategy for growth. We’re Australias first university and have an outstanding global reputation for academic and research excellence. Across 9 campuses, we employ over 7600 academic and non-academic staff who support over 60,000 students. We are undergoing significant transformative change which brings opportunity for innovation, progressive thinking, breaking with convention, challenging the status quo, and improving the world around us. Specific enquiries can be directed to Professor Alistair McEwan at alistair.mcewan(a)sydney.edu.au For more information about the position, or if you require reasonable adjustment or support filling out this application, please contact Emmen Saeed, Recruitment Partner on emmen.saeed(a)sydney.edu.au . If you would like to learn more, please refer to the Candidate Information Pack for the position description and further details *Closing date: 11:30pm 5 August 2018 (Sydney time)* The University of Sydney is committed to diversity and social inclusion. Applications from people of culturally and linguistically diverse backgrounds; equity target groups including women, people with disabilities, people who identify as LGBTIQ; and people of Aboriginal and Torres Strait Islander descent, are encouraged. The University reserves the right not to proceed with any appointment. Candidate Information Pack <https://sydney.nga.net.au/publicfiles/sydney/jobs/9B19927D-F815-451C-9D4D-A…> How to apply: - Start your application by clicking the "begin" button. - Login to an existing account <https://sydney.nga.net.au/cp/index.cfm?event=jobs.gotoLogin&CurATC=EXT&CurB…> or reset your password <https://sydney.nga.net.au/cp/index.cfm?event=reg.forgottenPassword&CurATC=E…> - Preview Application Form <https://sydney.nga.net.au/cp/index.cfm?event=jobs.previewApplication&CurATC…> -- ALISTAIR MCEWAN | Ainsworth Chair of Technology and Innovation, Cerebral Palsy Alliance, Biomedical Devices and Instrumentation Coordinator, BMET Institute Faculty of Engineering and Information Technologies THE UNIVERSITY OF SYDNEY School of Electrical and Information Engineering, J03 The University of Sydney | NSW | 2006 T +61 2 9351 7256 | F +61 2 9351 3847 E alistair.mcewan(a)sydney.edu.au | W sydney.edu.au CRICOS 00026A This email plus any attachments to it are confidential. Any unauthorised use is strictly prohibited. If you receive this email in error, please delete it and any attachments. Please think of our environment and only print this e-mail if necessary.

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Deadline extended to July 20: Symposium and summer school on the Logistics of Neuronal Function, Frankfurt, Germany
by Jochen Triesch 10 Jul '18

10 Jul '18

We invite applications from PhD students and post-docs to participate in a two-week summer course on the Logistics of Neuronal Function in Frankfurt am Main, Germany, from August 28 to September 7. Neurons face a variety of logistics challenges. They need to organize the production, transport, storage, and recycling of various molecules such as neurotransmitters, mRNA, and proteins to fill their extensive dendritic and axonal arbors. For example, most proteins have turnover rates of several days, which implies that neurons must organize the production and transport of vast numbers of proteins to maintain their structure and function. Due to their large size compared to other cells of the body, these problems are particularly severe for neurons. It is likely that evolution has driven neurons to find robust and efficient solutions to these challenges. So how do they organize production, transport, delivery, storage, and recycling processes and how are logistic failures related to nervous system disorders? This first workshop and summer school on the logistics of neuronal function bring together leading experimentalists, theoreticians, and method developers to exchange ideas on these fundamental questions. Organizers: Jochen Triesch, Frankfurt Institute for Advanced Studies Erin Schuman, MPI Brain Research, Frankfurt Tatjana Tchumatchenko, MPI Brain Research, Frankfurt Christian Tetzlaff, Georg-August University, Göttingen Confirmed Speakers of the Giersch International Symposium (August 28 - September 1): Maarten Altelaar, Utrecht, Netherlands Peter W. Baas, Drexel U., USA Upinder S. Bhalla, TIFR, India Long Cai, Caltech, USA Daniel Choquet, Bordeaux, France Guillaume Drion, Liege, Belgium Seth Grant, University of Edinburgh, UK Kristian Franze, U. of Cambridge, UK Lukas Kapitein, Utrecht, Netherlands Ken Kosik, UC Santa Barbara, USA Timothy O’Leary, Cambridge University, UK William W. Lytton, SUNY Downstate, USA Jeremy Niven, U. of Sussex, UK Marianne Renner, Institut du Fer a Moulin, France Erik De Schutter, OIST, Japan Antoine Triller, École Normale Superièure, France Noam Ziv, Technion, Israel Confirmed Giersch Summer School Lecturers (September 3 - 7): Eric Hosy, U Bordeaux, France Timothy O’Leary, Cambridge University, UK William W. Lytton, SUNY Downstate, USA Marianne Renner, Institut du Fer a Moulin, France Christian Tetzlaff, U. Göttingen, Germany Jochen Triesch, FIAS, Germany Special Public Talk by: Nobel Laureate Edvard Moser The third "Giersch International Symposium", will take place at the Frankfurt Institute for Advanced Studies. The conference series, funded by STIFTUNG GIERSCH gives young scientists the opportunity to learn from well known, exceptional researchers and to expand their networks. Accommodation and meals are provided free of charge. To apply visit: https://indico.fias.uni-frankfurt.de/event/11/overview and see the instructions there. Required materials include: CV, letter of recommendation from supervisor, poster abstract, and short text specifying the reason for participation. Application Deadline: July 20 Contact: gis2018(a)fias.uni-frankfurt.de -- Prof. Dr. Jochen Triesch Johanna Quandt Research Professor Frankfurt Institute for Advanced Studies http://fias.uni-frankfurt.de/~triesch/ Tel: +49 (0)69 798-47531 Fax: +49 (0)69 798-47611

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PhD position in Neuroscience at the Bio-Imaging Lab, University of Antwerp, Belgium
by Georgios A. Keliris 10 Jul '18

10 Jul '18

Postdoc position in Neuroscience at the Bio-Imaging Lab, University of Antwerp, Belgium The Faculty of Pharmaceutical, Biomedical and Veterinary is seeking to fill a full-time (100%) vacancy (m/f) in the Department of Biomedical Sciences (Bio-Imaging Lab) under the supervision of Prof. Georgios A. Keliris Post-doc position investigating the role of neuromodulation in learning and memory The goal of the project is to understand the neural mechanisms modulating learning and memory in rats. A multimodal approach and combination of state-of-the-art methods (MRI-imaging, electrophysiology, optogenetics and pharmacogenetics) will be used to uncover both the global network as well as specific cellular mechanisms. This approach will also be employed in animal models of neurodegenerative diseases such as Alzheimer’s Disease. Profile and requirements · You hold a PhD degree in neuroscience, biomedical sciences, or related fields. · You can submit outstanding academic results. · Foreign candidates are encouraged to apply. · Your academic qualities comply with the requirements stipulated in the university’s policy <https://www.uantwerp.be/en/about-uantwerp/mission-vision/three-core-tasks/r…>. · You are quality-oriented, conscientious, creative and cooperative. · You are fluent in English and have strong communication skills, both in writing and oral presentations · You are a team player · Strong background in one or more of: imaging, computational neuroscience, mathematics, programming (e.g. Matlab/Python/C/R/…) will be considered as a bonus We offer · a post-doctoral position for a period of one year, with the possibility of renewal after positive evaluation · the start date is as soon as possible · a dynamic and stimulating work environment. How to apply? · Applications should be submitted to Georgios.Keliris(a)uantwerpen.be <mailto:Georgios.Keliris@uantwerpen.be> and should include a copy of your CV and a cover letter. Please use the following string in the subject: NMPDBILGAK18 · A pre-selection will be made from amongst the submitted applications. · More information about the application and the position can be obtained from Prof. Georgios A. Keliris by email:georgios.keliris@uantwerpen.be <mailto:georgios.keliris@uantwerpen.be> or tel.: +32 3 265 2772 The University of Antwerp is a family friendly organization, with a focus on equal opportunities and diversity. Our HR-policy for researchers was awarded by the European Commission with the quality label 'HR Excellence in research'. Prof. Dr. Georgios A. Keliris FBD/Biomedical Sciences Campus Drei Eiken – D.UC. 107 Universiteitsplein 1, 2610 Wirijk, BE Georgios.Keliris(a)uantwerpen.be <mailto:Georgios.Keliris@uantwerpen.be> P +32 3 265 27 72 <https://twitter.com/UAntwerpen> <https://www.facebook.com/UAntwerp> <https://plus.google.com/+UantwerpenBe/posts> <https://www.linkedin.com/company/university-of-antwerp>

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TENURE TRACK POSITION IN DATA SCIENCE AT ICTP - TRIESTE
by Matteo Marsili 10 Jul '18

10 Jul '18

TENURE TRACK POSITION IN DATA SCIENCE AT ICTP ICTP is seeking applicants for a new tenuree track position in theoretical computer science and data science. The successful applicant will undertake front-line research in the fields related to theoretical computer science and data science (e.g. machine learning and high dimensional statistics, information and coding theory, probabilistic models, combinatorial optimization and computational complexity, rigorous mathematical approaches and statistical physics approaches in computer science, theory of algorithms and high performance computing). He's also expected to assist in developing projects on data science in collaboration with ICTS and ICTP scientific groups. Applicants should have a documented record of excellence in research in theoretical computer science and data science, with at least two years of scientific research experience. For further details please see http://users.ictp.it/general/vn_QLS_DataScience.pdf <http://users.ictp.it/general/vn_QLS_DataScience.pdf> ICTP, based in Trieste, Italy, provides a top class multi-disciplinary research environment in theoretical sciences, with cutting edge research, education and training, and it has been a driving force behind global efforts for the advancement of science in the developing world. Matteo Marsili Senior Research Scientist, Abdus Salam ICTP, Strada Costiera 11, 34014, Trieste Ph: +390402240461, fax: +3904022407461, email: marsili(a)ictp.it

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Workshop on High Performance Computing Resources for Neuroscience
by Ted Carnevale 10 Jul '18

10 Jul '18

High Performance Computing Resources for Parallel Simulations and Data Analysis: NSG and HPAC Saturday, Nov. 3 from 9 AM to noon at downtown San Diego location. SUMMARY This workshop is intended for neuroscientists who need to use high performance computing (HPC) resources for computationally intensive tasks such as large modeling projects or analysis of neuroimaging data. It will examine resources offered by the Neuroscience Gateway Portal (NSG https://www.nsgportal.org/) and The Human Brain Project's High Performance Analytics and Computing Platform (HPAC https://hbp-hpc-platform.fz-juelich.de/) The workshop will combine hands-on instruction on how to use NSG with didactic presentations by NSG and HPAC developers and discussions with experienced users of these resources. The registration deadline for this workshop is Friday Oct. 12, but you should sign up early because space is limited. See https://neuron.yale.edu/neuron/static/courses/nsg2018/nsg2018.html for more information and a link to the registration form. OVERVIEW OF NSG AND HPAC NSG eliminates most administrative and technical barriers, providing free CPU time to users, and easy access to widely used software that currently includes BluePyOpt, Brian, CARLsim, DynaSim, EEGLAB, Freesurfer, GENESIS, Human Neocortical Neuroserver (HNN), Large Scale Neural Modeling Simulator (LSNM), MATLAB, MOOSE, NEST, NetPyNE, NEURON, Octave, PyNN, Python, R, TensorFlow, and the Virtual Personalized Multimodal Connectome Pipeline. NSG's web-based interface simplifies the tasks of uploading models or data, specifying job parameters, monitoring job status, and storing and retrieving output data. HPAC provides extensive HPC support for the HBP community. This includes developing and providing the hardware and software infrastructure required for large scale simulations, data management and analysis, visualization, and managing the complex workflows involved in performing these tasks.

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NEURON course at SFN 2018 meeting
by Ted Carnevale 10 Jul '18

10 Jul '18

Using NEURON to Model Cells and Networks Friday, Nov. 2 from 9 AM to 5 PM at a downtown San Diego location. This course provides a practical introduction to building and using models of neurons and networks with NEURON. Covered topics include basic concepts, workflow for building and using models, speeding up simulations with parallel hardware from multicore personal computers to massively parallel supercomputers, using Python with NEURON, and modeling reaction-diffusion with the RxD class. The registration deadline for this course is Friday Oct. 12, but you should sign up early because space is limited. See https://neuron.yale.edu/neuron/static/courses/sd2018/sd2018.html for more information and a link to the registration form. --Ted

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Conducting Interviews at CNS*2018 - Post-docs @ EPFL, Switzerland
by Eilif Muller 09 Jul '18

09 Jul '18

Dear Comp-Neuro community, I wish to inform you of openings for fully funded post-doctoral positions in "Biophysical Neuron Modeling and Dendritic Computation", and in "Simulation Neuroscience" (see details below), at the EPFL Blue Brain Project, Biotech Campus, Geneva, Switzerland. I will be at the CNS*2018 in Seattle, July 13-18. I warmly encourage interested candidates who will be there to get in touch with me by email (incl. CV) to arrange for an in-person interview. For those not going to CNS this year, applications by email are also highly encouraged (see below). Best regards, Eilif ------------- Dr. Eilif Muller Section Manager - Simulation Neuroscience - Cells & Circuits EPFL - Blue Brain Project Biotech Campus Chemin des Mines 9 1202 Geneva Switzerland Tel: +41 21 693 0698 Fax: +41 21 693 5350 www: http://bluebrain.epfl.ch/page-77926-en.html www: http://neuralensemble.org/people/eilifmuller ------------------------------------------------------------------------------------- The EPFL Blue Brain Project (BBP), located on the Campus Biotech in Geneva, Switzerland, applies advanced data-driven simulations, neuroinformatics, data analytics, and HPC-based approaches to the challenge of understanding the structure and function of the mammalian brain in health and disease. Within the Cells & Circuits Section of the BBP, we are looking to fill the following post-doc positions: *** Post-doctoral Researcher in Simulation Neuroscience *** Postition Shortname: "PostDoc-SimNeuro" We are looking for exceptional candidates to join a diverse and highly motivated multi-disciplinary team working at the interface of neuroscience, physics and computer science. Do you have a PhD in neuroscience, computational neuroscience, computer science, physics or related field, and experience in scientific computing with python or the NEURON simulation environment? Are you a constructive team player with excellent writing and communication skills who thrives in collaborative environments? Then we would like to hear from you! Several research topics across the scales of neuroscience (subcellular molecular processes, ion channels, synapses, neurons, and circuits) in systems such as mammalian neocortex, thalamus, and hippocampus are possible based on the expertise and interests of the candidate. *** Post-doctoral Researcher in Biophysical Neuron Modeling and Dendritic Integration *** Postition Shortname: "PostDoc-NeuronModeling" The primary objective for this position is to strengthen on-going biophysical neuron modeling and validation efforts in the project, by undertaking original scientific research to characterize the role of intrinsic cellular mechanisms in computation and dynamics at the dendritic, neuronal and network level. Candidates are expected to supervise computational neuroscience students, and to develop an intimate knowledge of the employed software in order to interface with engineering teams. The position is in close collaboration with electrophysiology labs, and modeling will go hand in hand with available and newly acquired experimental data. Your profile : * PhD in neuroscience, computational neuroscience, physics or related field * Expert in NEURON and multi-compartment conductance-based modeling as demonstrated by strong publication record * Expert in scientific computing (python, scipy, numpy, hdf5, gsl, Linux, etc.) * Knowledge of whole cell electrophysiology, ion channel experiments * Experience in automated neuron model optimization techniques * Experience in other programming languages (C++), parallel computing and software development (unit testing, continuous integration, version control, debugging and documentation) is of advantage * Experience in supervision of students and teaching * Strong team player and fluent English in speech and writing We offer: * An internationally visible project in simulation-based research in neuroscience having a leading role in the EU FET flagship “Human Brain Project” * A young, dynamic, inter-disciplinary, and international working environment * Very competitive salary Application deadlines: Until positions are filled Term of employment: Fixed-term (CDD) Work rate: 100% Duration: 1 year (renewable) Contact: Please get in touch with me directly by email to arrange an interview at CNS*2018. Otherwise, applicants should submit a cover letter and a detailed CV in PDF format only, with filenames “<surname>_<position-shortname>_CoverLetter” and “<surname>_<positon-shortname>_CV” electronically to jobs.bbp(a)epfl.ch Please refer to the position title in the “subject” field.

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Job opening for a Research Associate in computational auditory neuroscience at Imperial College London
by Reichenbach, Johann D T 09 Jul '18

09 Jul '18

Dear all, I am pleased to announce the opening for a Research Associate in in computational auditory neuroscience in my group at the Department of Bioengineering, Imperial College London. The successful candidate will work in an interdisciplinary setting combining computational and experimental methods in human auditory neuroscience. In particular, the project will explore how complex transcranial current stimulation can help to better perceive speech in noise. Full details including information for how to apply is here: https://www.imperial.ac.uk/jobs/description/ENG00430/research-assistantasso… Best, Tobias ------------------------------------------- Tobias Reichenbach Senior Lecturer (Associate Professor) Department of Bioengineering Imperial College London South Kensington Campus SW7 2AZ London, UK http://www.bg.ic.ac.uk/research/reichenbach/

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Postdoc positions in computational neuroscience at NYU-Shanghai
by Sukbin Lim 09 Jul '18

09 Jul '18

Two postdoctoral positions are available in Sukbin Lim's lab at NYU-Shanghai as part of NYU’s global network and the NYU-ECNU Institute of Brain and Cognitive Science (https://shanghai.nyu.edu/research/brain) The overarching goal of the lab is to understand network interactions and dynamics for learning and memory. We have thrived to provide a mechanistic understanding of local circuits and interactions among local circuits and to develop tools to reverse-engineer the mechanism. More information on the research can be found at http://shanghai.nyu.edu/research/brain/faculty/Sukbin-Lim. Environment: Institute of Brain and Cognitive Science at NYU-Shanghai is a multidisciplinary and collaborative research environment. Candidates will be encouraged to collaborate with systems and computational neuroscience labs, computer and data science groups at NYU-Shanghai and NYU. The initial appointment is for one year, renewable up to 3 years subject to progress. Globally competitive compensations will be provided. To Apply: Qualified applicants are expected to hold a Ph.D. by the start date of the position in computational and theoretical neuroscience, or related discipline with strong quantitative training in Mathematics, Physics, Computer Sciences, and Engineering. Strong programming skills (e.g., Python, MATLAB or C/C++) and experience in modeling networks/complex systems will be valued. Knowledge of Neuroscience would be a plus. Applications will be reviewed until the position is filled. To be considered, please send a curriculum vitae, short research statement and the names and contact information of two references to *sukbin.lim(a)nyu.edu <xinying.cai(a)nyu.edu>*. Also, I can meet with candidates at CNS 2018 meeting in Seattle or Bernstein conference in Berlin.

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