June 2018 - Comp-neuro - lists.cnsorg.org

IBRO Simons Computational Neuroscience Imbizo 2019 - call for applications
by Antrobus, Alexander 11 Jun '18

11 Jun '18

The IBRO-Simons computational neuroscience imbizo is a summer school in computational neuroscience and machine learning, hosted each January in Cape Town, South Africa. The event is generously sponsored by the International Brain Research Organisation (IBRO) and the Simons Foundation (Simons). "Imbizo" is an isiXhosa word, meaning "A gathering to share knowledge". The aim of the isiCNI is exactly this: to create an environment in which young African and international students can explore computational neuroscience together, forming strong friendships in the process. Three weeks of intensive lectures, tutorials, projects and fun! When and where? January 6th - 27th 2019 Cape Town, South Africa TO APPLY: https://imbizo.africa<https://imbizo.africa/> [http://isicni.gatsby.ucl.ac.uk/img/Africagrey_trans_small.png]<https://imbizo.africa/> imbizo.africa - #isiCNI2019<https://imbizo.africa/> imbizo.africa The IBRO-Simons Computational Neuroscience Imbizo: a computational neuroscience school in Cape Town, South Africa Faculty for 2019 include: Dora Angelaki (Bayor College, Houston) Demba Ba (Harvard Uni, Boston) Sophie Denève (ENS, Paris) Adrienne Fairhall (Univ of Washington, Seattle) Peter Latham (Univ College London) Timothy Lillicrap (Google Deepmind, London) Joseph Raimondo (Univ of Cape Town) Athanassia Papoutsi (IMBB-FORTH, Hellas) Srikanth Ramaswami (EPFL, Lausanne) Blake Richards (Univ Toronto) Andrew Trevelyan (Newcastle Univ., Newcastle) Misha Tsodyks (Weizmann Inst., Rehovot) Tim Vogels (Oxford) Byron Yu (Carnegie Mellon Univ, Pittsburgh) Who should apply? The Imbizo is designed to introduce students with backgrounds in analytic fields (computer science, statistics, physics, mathematics, engineering, etc.) to the field of computational neuroscience. It will also benefit advanced experimental biologists who would like to learn more computational skills. It also provides an opportunity for students already working in computational neuroscience to do 3 weeks of intensive, focused work in a different sub-topic of the field. Students should generally be at Masters/early PhD level, and have completed at least a 2nd-year university level course in computer science, statistics, physics or mathematics. Some coding experience will also be helpful. More advanced level students (post-Docs, early career PIs) may also be accepted if they can motivate how the courses at the Imbizo could help their career. Well motivated, exceptional undergraduates will also be considered. African students are especially encouraged to apply. What does it cost? The attendance fee for the isiCNI2019 is EUR 1,100.00. Thanks to our generous sponsors, significant bursaries are available to subsidise and waiver student fees, and provide some travel bursaries. Funding will be allocated according to need and merit. Please be sure to complete the relevant section of the application. For more information, please visit https://imbizo.africa<https://imbizo.africa/> [http://isicni.gatsby.ucl.ac.uk/img/Africagrey_trans_small.png]<https://imbizo.africa/> imbizo.africa - #isiCNI2019<https://imbizo.africa/> imbizo.africa The IBRO-Simons Computational Neuroscience Imbizo: a computational neuroscience school in Cape Town, South Africa Or contact isicn.imbizo[AT]gmail.com Thanks and regards IBRO-Simons Computational Neuroscience Committee 2019

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postdoctoral position in computational neuroscience at the IIT - Italy
by Stefano Panzeri 11 Jun '18

11 Jun '18

A postdoctoral position is currently available at the Istituto Italiano di Tecnologia, within the new Center for Human Technologies in Genoa, Italy. The research will be jointly supervised by Stefano Panzeri ( https://www.iit.it/people/stefano-panzeri) and Cristina Becchio ( https://www.iit.it/it/people/cristina-becchio). The aim of this project is to investigate, using both neural network models and the mathematical analysis of behavioral, psychophysical and neuroimaging data from cognitive experiments, how motor variability affects action observation and prediction in both typically developing individuals and individuals with autism. The laboratories of the two supervisors offer a wide range of interdisciplinary expertise in computational and cognitive neuroscience, including advanced analysis, neural analyses techniques, neural network modeling, motion tracking, psychophysics and neuroimaging techniques. The laboratories offer a thriving, well-funded research environment with extensive international collaborations and ample opportunities for advanced training and personal scientific growth. We seek candidates holding a PhD in a numerate or neuroscientific scientific discipline, with a solid computational background and a keen interest in neuroscience and cognition. The ideal candidate is a highly motivated and creative individual who wants to work in a dynamic, multi-disciplinary research environment and is willing to interact with both experimental and theoretical cognitive neuroscientists. The formal deadline for applications is *July 9**th** 2018*. However, interested candidates are advised to contact informally Stefano Panzeri ( stefano.panzeri(a)iit.it) *as soon as possible*. The formal application should be sent by email to *jobpost.75446(a)iit.it* <jobpost.75446(a)iit.it>, *quoting “One post-doctoral position at the interface between Computational and Cognitive Neuroscience - CB 75446 CB 75447” in the subject*. The formal application should contain the CV, a brief statement of research interests, and names and email addresses of 2 referees. Please see the following link for further details: https://www.iit.it/careers/openings/opening/767-one-post-doctoral-position-… Yours truly Stefano Panzeri

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An Electrodynamic Theory of the Brain
by Patirniche, Dinu 11 Jun '18

11 Jun '18

Dear Colleagues, What is a meter? If you say a unit length, you are correct. However, the meter is not just any unit of length, but one that is relevant for you as a human. Mature humans are around 1.70m high, and walk comfortably at 1m/s. But why do we use the meter at all, when it comes to expressing events and distances encountered in the brain? A commonly held biophysical dogma says that magnetic interactions occurring among neighboring compartments of biological tissues, such as for example the different neurons in a brain, can be ignored. The typical argument used to give credit to all biophysical theories rooted in electrostatic is related to the observation that the vast majority of all electrical events within living tissues propagate are incredibly low speeds. Thus, since action potentials (APs), that is, sharp fluctuations of the electric field, are seen to propagate at speeds between 1 and 100 m/s, any dynamic induction phenomena arising due to the presence of such an event is apriorily excluded. And indeed, with meter-long sensors there is hardly any significant electrodynamics signals to be recorded. However, acknowledging that the AP is playing a decisive role in the chemical transmission cycle, we could express the AP's speed in units that are relevant to this process. Since the dendritic spine is an integral part of the chemical transmission machinery, we could introduce a new unit of length and call it the "dendritic-spine-head" to mean 1 micro-meter, or 10^-6 m. Thus, referring to the spine as an observer of the AP, this event propagates at 1,000,000 "dendritic-spine-heads"/s. From the perspective of a spine, the production of such an event is anything but a stationary phenomenon, appearing necessary to consider what an electrodynamic theory might say about the interactions between an incoming electrical pulse and a fixed spine. In following this route, I came to the conclusion that all biological organisms can be easily decomposed into a finite set of disjoint, and electrically insulated volumes, that appear to function as a set of nested highly-exotic electromagnetic antennae. If this view can be maintained, understanding brains as room-temperature quantum computers, and life as a globally coherent state within some finite reach, is inevitable. I present this theory in a preprint entitled Dynamic Aspects of Finite Architectures (http://doi.org/10.13140/RG.2.2.20815.79527), and invite you to read, comment and share this manuscript. Best regards, Dinu Patirniche.

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Ph.D. Computational Neuroscience @University of Padova
by suweis infn 10 Jun '18

10 Jun '18

Dear all, call are open for Ph.D. position in Computational Neuroscience @ the Padova Neuroscience Center, University of Padova (http://pnc.unipd.it/phd-neuroscience/). In particular we propose three different projects: - The Critical Brain in Action (http://pnc.unipd.it/wp-content/uploads/2018/06/P19_Suweis.pdf) - Controllability and Observability of Rat Brain Activity (http://pnc.unipd.it/wp-content/uploads/2018/06/P17_Vassanelli.pdf) - Intrinsic brain activity and sensory coding in the rodent whisker somatosensory system (http://pnc.unipd.it/wp-content/uploads/2018/06/P18_Vassanelli.pdf) The deadline for the application is 26 June 2018. Interested candidate can contact me suweis(a)pd.infn.it Please forward this message to collaborators and students. Thanks Samir Suweis - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Samir Suweis, Ph.D. https://impactstory.org/u/SamirSuweis <https://impactstory.org/u/SamirSuweis> @SamirSuweis Research Scientist (RTDa) LIPh Lab, Physics Department, University of Padova Tel: +39 049 827 72 51 www.pd.infn.it/~maritan/people/Samir/samir.html

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Post-doctoral research scientist position for psychophysics in audio-visual virtual reality
by Seeber, Bernhard 08 Jun '18

08 Jun '18

Dear List, we are inviting applications for a post-doctoral research scientist to join our team for research on psychoacoustics in complex audio-visual virtual environments. Main responsibilities are: - Development of novel techniques for and auditory experiments in interactive audio-visual virtual reality - Development of analysis methods for behavioral responses and statistical analysis of the results - Research on binaural hearing and auditory scene analysis with normal hearing listeners - Publication in English-language scientific journals and presentations at conferences - Supervision of student projects, assistance with teaching and with raising external funding. The position is full time and will start at the earliest convenient date. Qualifications: - Successfully completed doctoral degree (PhD) in one of the following areas: psychoacoustics, audio technology, virtual reality, acoustics, multimodal interaction, signal processing, or a related area - Knowledge and experience desirable in designing and analyzing psychophysical experiments, models of the auditory system, virtual acoustics, audio signal processing, machine learning, auditory scene analysis, binaural hearing, speech perception and speech tests - Very good programming skills in Matlab, Python, or C/C++ - Excellent written and oral communication skills as well as experience with scientific publications - Interest in basic research and the development of technical systems in virtual reality - Flexibility and good interpersonal skills - Interest in supervising students, helping with teaching, and raising external funds. We offer... you the opportunity to join a dynamic, interdisciplinary team, to work with up-to-date technical equipment including an anechoic chamber hosting an audio-visual virtual reality system, and to learn about the latest methods in hearing research. As part of the DFG collaborative research center "Hearing acoustics: Perceptual principles, Algorithms and Applications" you will work closely with our project partners at the University of Oldenburg. Our close interaction with the Bernstein Centre for Computational Neuroscience Munich (www.bccn-munich.de), the Munich School of BioEngineering (www.bioengineering.tum.de), the Graduate School of Systemic Neurosciences (www.gsn.uni-muenchen.de), the Hearing Research Network Munich, our extensive cooperation with industry and with scientific partners, and the numerous courses offered at TUM create an attractive environment with excellent perspectives for personal development. Please see www.aip.ei.tum.de for further information. Employment is according to the state employees salary scheme (TV-L/E13) and is initially for 1 year with the option for extension to 4 years. Women are explicitly encouraged to apply. Severely handicapped persons will be favored if they are equally qualified. In principle, the position could also be filled part-time. Munich - the city famous for the Oktoberfest, high-end cars and its unique location to the Alps - is a bustling, international and interesting place to live which offers a wide range of opportunities to engage in cultural and leisurely activities - from opera to skiing. Interested? I look forward to answering your questions on the phone (+49 89 289 28282) or by email. Please send your expressive application preferably by email no later than 30 June 2018 to: Prof. Dr.-Ing. Bernhard Seeber Professorship for Audio Information Processing Technical University of Munich Arcisstrasse 21 80333 Munich Germany Email: aip(a)ei.tum.de. The job advertisement can also be found at: https://portal.mytum.de/jobs/wissenschaftler/NewsArticle_20180608_072800 Kind regards, Bernhard

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Postdoc position in Geometric Methods for Deep and Reinforcement Learning at RIST
by Luigi Malagò 08 Jun '18

08 Jun '18

=========================================================== *Subject*: Postdoc position in Machine Learning (1 year, renewable up to 2.5 years) *Institution*: RIST - Romanian Institute of Science and Technology, Cluj-Napoca *Keywords*: Deep Learning, Reinforcement Learning, Stochastic Optimization, Optimization over Manifolds, Information Geometry, Riemannian Geometry *Application deadline*: 30 June 2018 (applicants are encouraged to apply earlier) *Salary*: around 2190 euro net *Official announcement*: http://rist.ro/en/details/news/postdoc-positio ns-in-deep-learning-and-machine-learning.html =========================================================== Dear colleagues, the Romanian Institute of Science and Technology (RIST) has an opening for a postdoc position, in the context of the DeepRiemann project “Riemannian Optimization Methods for Deep Learning”, funded by European structural funds through the Competitiveness Operational Program (POC 2014-2020). The appointments will be for 1 year, with possible extensions up to 2.5 years. The DeepRiemann project aims at the design and analysis of novel training algorithms for Neural Networks in Deep Learning, by applying notions of Riemannian optimization and differential geometry. The task of the training a Neural Network is studied by employing tools from Optimization over Manifolds and Information Geometry, by casting the learning process to an optimization problem defined over a statistical manifold, i.e., a set of probability distributions. The project is highly interdisciplinary, with competences spanning from Machine Learning to Optimization, Deep Learning, Statistics, and Differential Geometry. The objectives of the project are multiple and include both theoretical and applied research, together with industrial activities oriented to transfer knowledge, from the institute to a startup or spin-off of the research group. The positions will be part of the new Machine Learning and Optimization group http://luigimalago.it/group.html, which performs research at the intersection of Machine Learning, Stochastic Optimization, Deep Learning, and Optimization over Manifolds, from the unifying perspective of Information Geometry. The group is one of two newly-formed groups in Machine Learning at RIST, where about 20 new postdoctoral research associates and research software developers will be hired by 2018. The official job announcement can be seen here: http://rist.ro/en/details/news/postdoc-positions-in-deep-lea rning-and-machine-learning.html Informal inquiries can be sent to Dr. Luigi Malagò <malago(a)rist.ro>, principal investigator of the DeepRiemann project. Application deadline: 30 June 2018 (applicants are encouraged to apply earlier) best regards, Luigi Malagò

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Postdoc position in computational neuroscience- University of Calgary
by Roberto C Sotero 07 Jun '18

07 Jun '18

The Computational Neurophysics Lab at the University of Calgary ( www.soterolab.com), headed by Dr. Roberto C. Sotero, is looking for a talented postdoctoral fellow, interested in working in the field of computational neuroscience, specifically modeling and identifying brain networks from EEG and fMRI data, and developing model-based control methods to steer these networks from their pathological dynamics towards healthy dynamics. As an example, see our recent paper: http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.10061… The perfect candidate has a strong mathematical, physical, or engineering background (or equivalent), programming skills, and a keen interest in biological and neural systems. A PhD in the field of computational neuroscience is a plus. Applications including a CV, the statement of research interests, and the names and contact information of two references should be sent to roberto.soterodiaz(a)ucalgary.ca. Applications will be assessed as they arrive, and the position will remain open until filled. Salary will be based on University of Calgary post-doctoral rates and commensurate with experience. Best regards, Roberto C. Sotero, PhD Assistant Professor Department of Radiology Hotchkiss Brain Institute University of Calgary, Alberta, Canada www.soterolab.com roberto.soterodiaz(a)ucalgary.ca

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PhD position, University of Innsbruck (Austria)
by Antonio Rodriguez-Sanchez 07 Jun '18

07 Jun '18

Ph.D. Student Position in Robot Learning or Computer Vision at U. Innsbruck The research group in Intelligent and Interactive Systems <https://iis.uibk.ac.at/>, led by Profs. Justus Piater and Antonio Rodríguez-Sánchez, has an opening for a Ph.D. student, on a university assistant position that includes minor teaching requirements. The research will be loosely aligned with ongoing research projects <https://iis.uibk.ac.at/research/projects> in the lab: deep learning in computer vision or robotics computational models of biological vision biologically-inspired computer vision robot vision and closed-loop sensorimotor interaction open-ended and intrinsically-motivated robot learning concept discovery by learning robots goal-oriented exploratory learning prediction of action effects robot skill optimization human-robot interaction and collaboration How to Apply Interested applicants should send a letter of motivation, a curriculum vitae including URLs of English-language theses and dissertations, scanned transcripts and diplomas, and contact information of at least two references in PDF to Justus.Piater(a)uibk.ac.at <mailto:Justus.Piater@uibk.ac.at>. Applications will be considered as they are received, until all positions are filled. Starting date is October 2018 or earlier. More details on https://iis.uibk.ac.at/jobs <https://iis.uibk.ac.at/jobs> Priv. Doz. Antonio Rodríguez-Sánchez, PhD Intelligent and Interactive Systems Dept. of Computer Science - Institut für Informatik University of Innsbruck - Universität Innsbruck Austria – Österreich https://iis.uibk.ac.at/public/antonio/ <https://iis.uibk.ac.at/public/antonio/>

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Combined Postdoc and science manager to be integrated into the Human Brain Project – Data-driven modeling of plasticity combined with project coordination
by Jeanette Hällgren Kotaleski 05 Jun '18

05 Jun '18

Dear Colleagues, dear all, KTH Royal Institute of Technology, Stockholm, is currently recruiting a joint postdoc / science manager to be working within the Human Brain Project. Specifically for the above position data-driven modeling of receptor induced cascades such as GPCR dependent cascades involved in neuromodulation and synaptic plasticity will be done. The first year also research coordination and management is an important challenge of the job. Position can be prolonged (up to maximally 2 or 4 years, the latter if one has received a PhD within the last 3 years). More info and how to apply at: https://www.kth.se/en/om/work-at-kth/lediga-jobb/what:job/jobID:208384/wher… All the best, Jeanette Hellgren Kotaleski Prof, Dept Computational Science and Technolgy, School of Electrical Engineering and Computer Science, KTH Royal Institute of Technology, Stockholm

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Master programme in Neuroinformatics and Computational Neuroscience
by Marcus Kaiser 05 Jun '18

05 Jun '18

Dear all, Please forward the following to interested final year UG students. our one-year master degree program in Neuroinformatics and Computational Neuroscience at Newcastle University is now accepting student applications. The course focuses on handling brain connectivity datasets, analyzing electrophysiological recordings, and simulating neural activity and development. Applications range from theoretical neuroscience and machine learning to experimental and clinical research. There are more than a dozen faculty members in the areas of Neuroinformatics, Health Informatics, and Neurotechnology within Newcastle University (see overview at http://neuroinformatics.ncl.ac.uk/ ). Close interactions with experimental and clinical researchers are a key component of the course and the dissertation research project. Ongoing research areas in Newcastle include neuroimaging, psychophysics, systems neuroscience (visual, auditory, and motor system), ageing, neurorehabilitation, brain rhythms, brain-machine interfaces, neurochips, and connectomics (http://www.ncl.ac.uk/ion ). Newcastle University hosts around 100 principal investigators in the neurosciences. You can find out more about the program and how to apply at http://www.ncl.ac.uk/postgraduate/courses/degrees/computational-neuroscienc… COURSE OUTLINE The MSc in Neuroinformatics is a full-time, one-year advanced masters course designed for students who have a good degree in the biological sciences or the physical sciences (computer science, mathematics, physics, engineering). It provides the specialist skills in core Neuroinformatics courses (such as computing and biology) with a significant focus on the development of research skills. Prior experience with computers or computer programming is not required. The program is ideal for students aiming for careers in industry or academia. The course is based in the School of Computing but there are strong links with biomedicine, engineering, and the Institute of Neuroscience. WHY STUDY AT NEWCASTLE? The MSc in Neuroinformatics is a truly interdisciplinary degree and provides the dual skills necessary to establish a rewarding career in this research area. The Newcastle program has a research focus on data management, network analysis (e.g. Kaiser, Neuroimage, 2011), and simulation. Newcastle is among the pioneers of the field in the UK and hosted the £4m EPSRC-funded CARMEN project for managing and processing electrophysiology data. We are currently involved in the £10m EPSRC/Wellcome Trust-funded CANDO project for developing an implantable optogenetic device for epilepsy patients (http://www.cando.ac.uk/ ). Newcastle has strong links with the International Neuroinformatics Coordinating Facility (INCF). Currently, members of the faculty lead Neuroinformatics UK (http://www.neuroinformatics.org.uk/ ) and co-chair the Neuroinformatics Special Interest Group of the British Neuroscience Association (BNA). COURSE CONTENT Semester 1 contains modules to build the basic grounding in, and understanding of, Neuroinformatics theory and applications, mathematics and statistics, and programming. Semester 2 introduces modules that focus heavily on introducing subject-specific research skills and includes options for choosing modules. A major part of the programme is a research project that will occupy approximately six months. This project may be associated with staff in any of the Schools mentioned above, thus providing a wide range of exciting areas in which the newly learnt Neuroinformatics skills can be deployed. HOW TO APPLY Applications for this program are now being accepted. Please see http://www.ncl.ac.uk/postgraduate/courses/degrees/computational-neuroscienc… for more information. Best, Marcus -- Marcus Kaiser, Ph.D. FRSB @ConnectomeLab<https://twitter.com/ConnectomeLab> Professor of Neuroinformatics Interdisciplinary Computing and Complex Biosystems (ICOS) Research Group School of Computing Urban Sciences Building Newcastle University 1 Science Square Science Central Newcastle upon Tyne NE4 5TG UK Lab website: http://www.dynamic-connectome.org<http://www.dynamic-connectome.org/>/ Neuroinformatics@Newcastle: http://neuroinformatics.ncl.ac.uk/ Neuroinformatics UK: http://www.neuroinformatics.org.uk/ Neuroinformatics one-year master programme: http://research.ncl.ac.uk/neuroinformatics/study

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