September 2017 - Comp-neuro - lists.cnsorg.org

AMCOS save the date
by AMCOS Conference 20 Sep '17

20 Sep '17

SAVE THE DATE *AMCOS –** Analysis and Modeling of Complex Oscillatory Systems* March 19-23, 2018 Barcelona, Spain The *AMCOS conference* aims at bringing together renowned experts and young researchers who work on the modeling of complex systems and the emergence of collective phenomena, as well as on the analysis of complex data sets in order to infer structure and functionality of networks. Accompanying *tutorials* by leading experts will interactively introduce the different conference themes. Do you want to present your work? *Registration and abstract submission opens October 15, 2017*. More info at amcosconference.com. *Date and Venue* Tutorials: March 19, 2018 Conference: March 20 - 23, 2018 PRBB <http://www.prbb.org/>, Parc de Recerca Biomèdica de Barcelona *List of speakers* (*TBC) - Peter Ashwin, - Ernest Barreto, - Ginestra Bianconi*, - Raffaella Burioni, - Dante R. Chialvo, - Gustavo Deco, - Alain Destexhe*, - Albert Díaz-Guilera, - Jordi Garcia-Ojalvo, - Wulfram Gerstner*, - Leon Glass, - Sonja Grün, - Cristina Masoller, - Yamir Moreno, - Florian Mormann, - Hiroya Nakao*, - Diego Pazó, - Juan G. Restrepo, - Alex Roxin, - Tilo Schwalger*, - Damián H. Zanette. *Topics covered* synchronization and nonlinear dynamics - dynamics on networks - connectivity and network inference - data analysis in neuroscience - critical phenomena - neural field models - computational neuroscience - complex oscillatory behaviour in physiology *Tutorials* Leading experts in the field will introduce the different conference themes interactively in tutorials on the first day of the conference week. The speakers are: - Ralph G. Andrzejak, - Arkady Pikovsky, - Michael Rosenblum, - Aneta Stefanovska. A (tentative) list of topics comprises basic theory of synchronization, synchronization approach to data analysis, basic concepts of nonlinear time series analysis, and time series analysis of non-autonomous dynamics. The participants are required to bring laptops installed with MATLAB/Octave if they want to take part in the practical activities. *Organizers* The doctoral students (Early Stage Researchers <http://www.uni-potsdam.de/cosmos-itn/people/early-stage-researchers-esrs/>) of the H2020 Marie Curie project COSMOS <http://www.uni-potsdam.de/cosmos-itn/> . For further information see amcosconference.com or contact us via e-mail < amcosconference(a)upf.edu>. Please forward to anyone interested.

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postdoctoral positions in computational neuroscience at Sandia National Laboratories
by Chance, Frances S. 20 Sep '17

20 Sep '17

Colleagues, We are seeking a Postdoctoral Appointee to join an interdisciplinary research program focused on understanding neural computation at the circuit level. The neural computing group includes researchers with expertise in machine learning, cognitive science, neuroscience, physics, engineering, mathematics, and data analytics. Current research topics of interest include computational models of retina, visual cortex (or the neural circuitry underlying perception), and the hippocampus. More information on Sandia’s neuroscience research can be found at http://neuroscience.sandia.gov/. We are also encouraging potential applicants to look at several of Sandia’s laboratory wide fellowships for recent PhD graduates, including the John von Neumann Fellowship (http://www.sandia.gov/careers/students_postdocs/fellowships/johnvonneumann_…) in computational sciences and the inaugural Jill Hruby Fellowship (http://www.sandia.gov/careers/students_postdocs/fellowships/hruby_fellowshi…). While an offer of employment is not contingent upon receiving one of these fellowships, a number of them do have deadlines in the coming months. To apply, visit http://www.sandia.gov/careers/ and click "View All Jobs". Enter “658202” into the search box to locate this posting. For questions please contact Frances Chance (fschanc(a)sandia.gov<mailto:fschanc@sandia.gov>) or Brad Aimone (jbaimon(a)sandia.gov<mailto:jbaimon@sandia.gov>).

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post-doc positions to work on integrated information theory (IIT) with Prof. Giulio Tononi at University of Wisconsin-Madison
by Larissa Albantakis 20 Sep '17

20 Sep '17

*Post-doc position(s) to work on Integrated Information Theory (IIT) * Prof. Giulio Tononi, University of Wisconsin, Madison Several postdoctoral positions are available at the Wisconsin Institute for Sleep and Consciousness in the laboratory of Prof. Giulio Tononi to study complex systems within the framework of integrated information theory (IIT). Immediate funding is available for a range of projects including the foundational development of IIT’s mathematical framework, the development of practical measures of integrated information, and their applications to complex systems (biological and artificial). *Required:* - Strong training in an analytically rigorous discipline such as theoretical or computational biology/neuroscience, physics, mathematics, computer science, or engineering - Programming experience (knowledge of MATLAB, Python, and/or C++ is of advantage) * Preferred:* - Experience in information theory and complex systems - Interest in the philosophy of causation Appointments are renewable from year to year for up to three years, starting as soon as possible or until the positions are filled. Postdoc salaries correspond to the National Institutes of Health National Research Service Award (NRSA) stipend schedule for postdoc trainees, based on number of years of postdoctoral experience. Candidates should send a CV, brief statement (500 words maximum) describing their research interests and potential role within the lab, and email addresses and phone numbers of three references to: Giulio Tononi, MD, PhD (gtononi(a)wisc.edu) Note that generic applications will not be considered. To demonstrate a real interest in IIT, we strongly recommend applicants calculate the Φ value of a small network—three fully connected XOR logic gates, without self-loops, in state 0, 0, 0 (all off)—using the IIT online interface and include the result in the application email. For more information, see http://integratedinformationtheory.org/, or contact Larissa Albantakis, PhD (albantakis(a)wisc.edu) or William Marshall, PhD (wmarshall3(a)wisc.edu). -- Larissa Albantakis, PhD Department of Psychiatry University of Wisconsin 6001 Research Park Blvd Madison, WI 53719

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Postdoctoral position (Mathematical Neuroscience) at QIMRB, Brisbane Australia
by Matthew Aburn 19 Sep '17

19 Sep '17

Mathematical Neuroscience Research Fellow (full time 3 year appointment) - Innovative biomedical modelling - Attractive salary packaging & superannuation options This research fellow will pursue large-scale computational modelling and simulation of brain activity, and innovative analyses of time series and neuroimaging data, with particular focus on epilepsy. *Responsibilities* - You will contribute to developing and analysing new mathematical models of large-scale brain activity, including both biophysical neural mass models and networks of non-linear oscillators. - Simulate computational models on GPUs or high performance computing clusters, and collaborate in applying these to clinical and neuroscience research. - Perform innovative analyses of high-dimensional neurophysiological and neuroimaging data. - Contribute to experimental design and prepare manuscripts for related studies. - Participate in intra-mural group activities, including presentation at lab meetings and collaboration with other lab members and clinicians. *About you* Essential: The successful applicant will possess the following: PhD in mathematics, physics, bioengineering, computer sciences or related field; demonstrated ability to implement mathematical methods in code; evidence of strong oral and written communication skills. Desirable: Ideally candidates may also have a published track record in analysis of non-linear dynamical systems, particularly neural mass or neural field models or coupled non-linear oscillators; previous experience with GPU programming or high performance computing clusters; previous experience in neuroscience research; or expertise in time series analysis or signal processing. *About the lab* Led by Prof Michael Breakspear, the Systems Neuroscience Group (SNG) is an independent research team within QIMR Berghofer. The SNG is a multidisciplinary group who undertake innovative computational modelling and analysis of brain activity in health and disease. QIMR Berghofer is a world-leading translational medical research institute. Based in Brisbane, Australia and working in close collaboration with clinicians and other research institutes, QIMR Berghofer is home to more than 600 scientists, students and support staff. *Salary* Salary range is AUD $81,395-$84,257 per annum, plus up to 15.75% superannuation, and attractive salary packaging. This is a full time three year appointment. Closing date is 15 October 2017 Apply here: http://www.qimrberghofer.edu.au/careers/positions-vacant

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Postdoctoral position (Bayesian Computation) at QIMRB, Brisbane Australia
by Matthew Aburn 19 Sep '17

19 Sep '17

Bayesian Computation Research Fellow (full time 3 year appointment) - Cutting edge data science - Attractive salary packaging & superannuation options This research fellow will develop new systems for model selection and model-based prediction, combining large data sets from patient neuroimaging and intracranial recordings, with biophysical forward models of brain dynamics. *Responsibilities* - You will contribute to the design of systems for Bayesian inference on large data sets, to perform model selection, parameter estimation, data assimilation and prediction using forward models of brain dynamics. - Implement these methods on GPUs or high performance computing clusters, and collaborate in applying these to clinical and neuroscience research, including an application to diagnosis and treatment of epilepsy. - Perform innovative analyses of high-dimensional neurophysiological and neuroimaging data. - Contribute to experimental design and prepare manuscripts for related studies. - Participate in intra-mural group activities, including presentation at lab meetings and collaboration with other lab members and clinicians. *About you* Essential: The successful applicant will possess the following: PhD in mathematics, physics, statistics, bioengineering, computer sciences or related field; demonstrated ability to implement mathematical methods in code; and evidence of strong oral and written communication skills. Desirable: Ideally candidates may also have a published track record in applying computational Bayesian methods such as Sequential Monte Carlo, MCMC, Variational Bayes; previous experience with GPU programming or high performance computing clusters; previous experience in neuroscience research; or expertise in time series analysis or signal processing. *About the lab* Led by Prof Michael Breakspear, the Systems Neuroscience Group (SNG) is an independent research team within QIMR Berghofer. The SNG is a multidisciplinary group who undertake innovative computational modelling and analysis of brain activity in health and disease. QIMR Berghofer is a world-leading translational medical research institute. Based in Brisbane, Australia and working in close collaboration with clinicians and other research institutes, QIMR Berghofer is home to more than 600 scientists, students and support staff. *Salary* Salary range is AUD $81,395-$84,257 per annum, plus up to 15.75% superannuation, and attractive salary packaging. This is a full time three year appointment. Closing date is 15 October 2017 Apply here: http://www.qimrberghofer.edu.au/careers/positions-vacant

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University of British Columbia Murphy lab: PDF and Graduate students wanted, automated in vivo imaging and optogenetics in mouse cortex
by Tim Murphy 15 Sep '17

15 Sep '17

University of British Columbia Murphy lab: PDF and Graduate students wanted, automated in vivo imaging and optogenetics in mouse cortex. The Murphy lab at the University of British Columbia is looking for both graduate students and postdoctoral fellows to join a dynamic research team focused on the function of mouse cortex in both normal brain as well as models of stroke and neuropsychiatric disorders. <http://www.neuroscience.ubc.ca/faculty/murphy.html> http://www.neuroscience.ubc.ca/faculty/murphy.html Applicants should have experience in quantitative methods and computer programming and/or behavioral neuroscience. Software systems include both data acquisition and analysis using Python or/and Matlab. Current projects evolve around automated brain imaging/interventions using mouse home cages <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909937/> https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909937/. The lab has a fully equipped maker space with a 3D printer and electronics and other hardware fabrication facilities. Future work includes integration of behavioral tasks, including go-, no-go- and fine motor control with automated brain imaging and optogenetic stimulation or inhibition. Projects are focused around two major disease areas, which include stroke and mouse models of neuropsychiatric disorders. The laboratory is part of the UBC Centre for Brain Health and the Graduate program in Neuroscience. These entities form a vibrant research community. Applicants are encouraged to apply directly to Tim Murphy and after an initial application are expected to include 3 letters of reference plus an undergraduate and graduate transcript. Salary and stipends are consistent with Canadian granting standards. Please write: <mailto:thmurphy@mail.ubc.ca> thmurphy(a)mail.ubc.ca Tim Murphy, PhD Professor Kinsmen Lab, Dept. of Psychiatry University of British Columbia 2255 Wesbrook Mall Detwiller Pavilion Rm. 4N1 Vancouver, B.C. V6T 1Z3 Canada 604-822-0705 office

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Postdoctoral fellowship in human intracranial electrophysiology: Cedars-Sinai Medical Center and California Institute of Technology
by Ueli Rutishauser 15 Sep '17

15 Sep '17

*** Apologies for multiple postings*** A postdoctoral position focused on investigating the neural mechanisms of learning and memory is available in the Laboratory of Ueli Rutishauser at Cedars-Sinai Medical Center and Caltech. The lab is broadly interested in human memory and decision making. We focus on understanding how new long-term memories are formed, how existing memories are retrieved to make choices, how memories for social stimuli such as faces are formed, and on utilizing this knowledge to develop new treatments for memory disorders. We utilize a combination of in-vivo electrophysiology (single-neuron and local field potential recordings), neuroimaging, computational and behavioral approaches. The focus of this project is on single-neuron recordings in epilepsy patients to investigate the role of theta-oscillations in coordinating activity during memory-based decisions. The applicant will join a vibrant and collaborative interdisciplinary research team consisting of investigators at both Cedars-Sinai Medical Center and the California Institute of Technology. We provide ample opportunity for training with state-of-the art equipment, facilities, analytical methods, and experimental techniques. Our work is funded by the NSF, McKnight Endowment fund, and NIH, including a newly established NIH BRAIN consortium between Cedars-Sinai/Caltech (Rutishauser, Mamelak, Adolphs), University of Toronto (Valiante), Johns Hopkins University (Anderson), and Harvard/Childrens (Kreiman). This provides ample opportunity to work with large-scale single-neuron datasets to test model predictions. This position is based at Cedars-Sinai in Los Angeles. Candidates should have a recent PhD in neuroscience or related field with a track-record of first-author publications. Strong programming (Matlab or similar), data analysis, and statistics skills are required. Previous electrophysiology experience is preferred. Excellent written and oral English communication skills are required. Previous human intracranial EEG and/or macaque electrophysiology experience is a strength. The position is available as early as Nov 1st 2017, with a competitive salary and benefits package commensurate with prior experience (NIH scale). The position is available with an initial appointment for one year and renewal based upon satisfactory performance. Cedars-Sinai is an equal opportunity employer. Applicants should send a CV, brief statement of research interests, and contact information for 2-3 references to Ueli Rutishauser at rutishauseru(a)csmc.edu. Information about the lab and a list of publications can be found at www.rutishauserlab.org . Applications will be reviewed on an ongoing basis. -- Ueli Rutishauser, Ph.D. http://rutishauserlab.org/

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Open position: clinical data manager, Marseille
by Irene Yujnovsky 14 Sep '17

14 Sep '17

> > Clinical data manager for national consortium on epilepsy surgery - Aix-Marseille Université > Marseille, FRANCE > > > A position for an experienced clinical data manager is open to create and maintain an epileptic patient database including registration, normalization and security issues and to ensure the communication with the key partners in the academic, clinical and industry sectors with the aim of generating individual Virtual Patient models using The Virtual Brain (TVB) platform as framework (see http://www.thevirtualbrain.org). This database will be generated in the context of the EPINOV (Improving EPilepsy surgery management and progNOsis using Virtual brain technology) project led by Professor Fabrice Bartolomei (http://fr.ap-hm.fr/service/neurophysiologie-clinique-hopital-timone) funded by the RHU programme. > > Qualification > > Candidates must be highly motivated to work on an interdisciplinary project and collaborate with the various members of the consortium. They should have a degree in biomedical engineering, medical informatics or equivalent level of knowledge. Candidates must possess a solid experience in management of clinical and/or research data and programming (C, MATLAB, Python). Experience with neuroimaging data (stereotactic EEG, MRI, DTI, MEG, EEG), clinical trials, neuroinformatics and its standard formats (for instance DICOM, XNAT, BIDS), machine learning and Big Data would be considered an advantage. > > The EPINOV project and consortium > We are a national consortium composed of clinicians, researchers and industrial partners interested in improving epilepsy surgical prognosis using large–scale brain modelling based on individual epileptic patient data. A prospective, randomized multicenter trial will be conducted with subjects suffering from drug-resistant epilepsy. The clinical trial will systematically evaluate the added value of personalized brain modelling in the surgical decision making. > > Terms of salary and employment > Salary will depend on the diploma and previous experience. Operating languages in the consortium are both French and English. > > Applications including a cover letter, curriculum vitae and the names of two referees should be sent by October 31st 2017 to: Dr. Irene Yujnovsky at irene.yujnovsky(a)univ-amu.fr > > --

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[jobs] Post-doctoral Position in Brain- and biosignal-based speech recognition @ the Italian Institute of Technology (IIT)
by Alessandro D'Ausilio 14 Sep '17

14 Sep '17

The IIT (Italian Institute of Technology) Centre for Translational Neurophysiology (CTNSC) is hiring 1 post-doc on Brain- and Biosignal-based Automatic Speech Recognition. Please find more information here: https://www.iit.it/careers/openings/opening/515-postdoctoral-position-in-br… Deadline: September 25th

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SCiNDU abstract deadline Oct 1st
by Geoffrey Goodhill 14 Sep '17

14 Sep '17

A reminder that the SCiNDU abstract deadline is October 1st: SYSTEMS AND COMPUTATIONAL NEUROSCIENCE DOWNUNDER (SCiNDU) Joint meeting with the 2017 QBI Plasticity Workshop and the 10th Australasian Workshop on Neuro-Engineering and Computational Neuroscience Dec 13-15th 2017 Queensland Brain Institute, University of Queensland, Brisbane, Australia http://www.qbi.uq.edu.au/scindu Confirmed speakers: Polina Anikeeva (MIT) Bernard Balleine (UNSW) Daphne Bavelier (U Geneva) John Bekkers (ANU) Kwabena Boahen (Stanford) Tobias Bonhoeffer (Max Planck Martinsried) Rosa Cossart (INMED Marseille) Kenji Doya (Okinawa) Adrienne Fairhall (U Washington) Marta Garrido (U Queensland) Alex Pouget (U Geneva) Pankaj Sah (U Queensland) Andre van Schaik (Western Sydney) Rafael Yuste (Columbia) Abstract submissions for poster presentation are due by Oct 1st. Some submissions will be selected for oral presentation. See http://www.qbi.uq.edu.au/scindu for more details. Professor Geoffrey J Goodhill Queensland Brain Institute and School of Mathematics & Physics University of Queensland St Lucia, QLD 4072, Australia Email: g.goodhill(a)uq.edu.au<mailto:g.goodhill@uq.edu.au> http://www.qbi.uq.edu.au/professor-geoffrey-goodhill

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