September 2016 - Comp-neuro - lists.cnsorg.org

NeuroMorpho.Org v7.0 [10th anniversary edition] released September 1st, 2016
by NeuroMorpho Administrator April 4, 2017

April 4, 2017

Dear colleagues, We're excited to announce that almost exactly 10 years after the original launch, NeuroMorpho.Org passed the milestone of 50,000 reconstructions in the September 1, 2016 release of Version 7.0. This major update includes 12,693 additional reconstructions from 35 new datasets. The new data added in these last 6 months equal the total amount accumulated in the first seven years. This release also introduce several new functionalities, including (1) bibliography documenting data re-use from nearly 500 citations; (2) ontology-smart searches by species, brain regions, neuron types, and experimental conditions; (3) DOI minting capability for each article-associated dataset; and (4) API enabling object-oriented access to data and metadata. The literature coverage database was also updated to include publications through August 2016. Please visit the What's new page<http://neuromorpho.org/WIN.jsp> for details on the added data and other updates. We appreciate any and all feedback and comments. We are continuously grateful to all the data contributors<http://neuromorpho.org/acknowl.jsp#DC> who freely share their hard-won tracings with the community. Our apologies if you receive multiple versions of this message through cross-listing. Sincerely, The NeuroMorpho.Org team<http://neuromorpho.org/acknowl.jsp#NMO> ---------------- Giorgio Ascoli<http://krasnow1.gmu.edu/cn3/ascoli>, PhD University Professor Director, Center for Neural Informatics, Structure, & Plasticity<http://krasnow1.gmu.edu/cn3> Neuroscience Program<http://neuroscience.gmu.edu/>, Krasnow Institute for Advanced Study<http://krasnow1.gmu.edu/> Bioengineering Department<http://bioengineering.gmu.edu/>, Volgenau School of Engineering<http://volgenau.gmu.edu/> MS2A1 - George Mason University<http://gmu.edu/>, Fairfax, VA 22030-4444 Ph. +1(703)993-4383/+1(703)673-8894 Author of "Trees of the Brain, Roots of the Mind<http://www.amazon.com/Trees-Brain-Roots-Giorgio-Ascoli/dp/0262028980/>" (MIT Press, 2015<http://mitpress.mit.edu/books/trees-brain-roots-mind>) Founding Editor-in-Chief, Neuroinformatics<http://link.springer.com/journal/12021>

1 1

Deadline extended for Brains and Bits NIPS Workshop
by Konrad Kording Sept. 29, 2016

Sept. 29, 2016

We just expanded the NIPS brains and bits deadline by a week: http://www.stat.ucla.edu/~akfletcher/brainsbits.html Consider joining us if you are interested in neural data science.

1 0

Open PhD Position in Neuroscience at the University of Bremen, Germany
by David Rotermund Sept. 29, 2016

Sept. 29, 2016

The Institute for Theoretical Physics at the University of Bremen, headed by Prof. Dr. Klaus Pawelzik, offers a PhD position in the field of Complex Adaptive Systems. Successful candidates will join an international research group that is located in the field of Complex Adaptive Systems with a specialization in Econophysics, Psychophysics and Computational Neuroscience. In the latter we work on Attention, Neuronal Dynamics, Learning and Neurotechnology. The project funded by the DFG is entitled: “Dynamic instabilities from information annihilation in neuronal networks” Many Complex Adaptive Systems, including human balancing behavior, financial markets, and neuronal networks, exhibit complex spatio-temporal activity. Interestingly, all these systems feature a dynamic balance of opposing influences. In this project we will investigate the consequences of simple but biologically realistic mechanisms that yield a balance of excitatory and inhibitory inputs into neurons. In particular, we will determine the conditions where this balance does not result in simple equilibria but causes complex temporal dynamics and power-law distributed avalanches of activity in recurrent networks. This topic is part of a long term research program where we investigate whether a single general principle, by which criticality emerges from an efficient absorption of information, can account for these observations in a wide range of systems. The position is funded with a salary comparable to a 65 % TVL13 position and comes with support for 3 years and direct supervision by the principal investigator. Ideal candidates have a MSc degree in Physics or Mathematics. In any case they must have a strong background in physics and/or computational neuroscience and solid programming skills. Above all, they must have a strong motivation, a sense for responsibility, interest for detailed analysis, and a distinct desire to learn. Fluency in English is required (both written and spoken). If you are interested, please send your complete application by 23th October 2016 by e-mail (see detailed instructions below) to ajanssen(a)neuro.uni-bremen.de. Severely disabled applicants and women with essentially identical and personal suitability will be preferentially selected. Detailed instructions for applicants ===================== Your application must comprise: Motivation letter -------------------- Your 1-2 page essay should reply the following questions: What is your background? In which fields have you worked before and how do you think this can be useful for the present job? What attracts you to the field of neuroscience? Which problem(s) in neuroscience are you most interested in? Which kind of person are you (e.g. creative, analytic, communicative, pragmatic, etc.) and how do you approach a research problem? What are your plans for your future career? Curriculum Vitae --------------------- Send a classical tabular CV with your contact details, your date-of-birth, a current photograph, and all stages of education and employment. List of skills, awards, publications List your skills, especially proficiency in languages (including the level of proficiency), that you think might be useful for the job. Also list awards you might have got and peer-reviewed papers, in case there are some. Contact details of two academic references -------------------------------------------------------- One of the references should be your MSc advisor. Please contact the references prior to listing their names so that they are not surprised if they get contacted. Your application can be in English or German, whatever language you are more familiar with. Please send your application to ajanssen(a)neuro.uni-bremen.de by 23th October 2016! All documents must be in PDF format and must not be compressed. Combine all documents to a single PDF file or at least name the separate files appropriately. If we find your application interesting, we will let you know within two weeks and potentially ask for more documents.

1 0

2 Available PhD Positions in Artificial Intelligence and Neuro-Cognitive Robotics, Ritsumeikan University, Japan
by Amir Aly Sept. 28, 2016

Sept. 28, 2016

**Apologies for Cross Posting ** *2 Available PhD Positions in Artificial Intelligence and Neuro-Cognitive Robotics at the Emergent Systems Laboratory, Ritsumeikan University, Japan* The Emergent Systems Laboratory [Link <http://www.em.ci.ritsumei.ac.jp/en>] at Ritsumeikan University in Japan (nearby Kyoto) announces 2 available PhD positions in artificial intelligence and neuro-cognitive robotics as a part of the new project: *"*Comparison and Fusion of Artificial Intelligence and Brain Science*"*. The successful PhD candidates will be involved in research about: *Understanding Neural Computation for Double Articulation Analysis Bridging Sensory-motor Information and Natural Language in Human Brain*, under the supervision of Tadahiro Taniguchi (Project Coordinator) [ Link <http://www.tanichu.com/profile>]. *I. Positions Description * Human brain can analyze a two-layer hierarchical structure embedded in speech signal called *double articulation structure* (i.e., speech signal is segmented into words and phonemes in a hierarchical manner). However, the computational process of double articulation analysis in human brain has not been revealed in neuroscience. In artificial intelligence and developmental robotics, we have not developed - yet - a robot that can automatically learn language from human-robot and sensorimotor real-world interactions in an unsupervised manner. This project aims to contribute to : - Understanding the neural mechanism supporting human and robot language acquisition involving double articulation analysis. - Developing unsupervised machine learning methods for building the next-generation communicative robots. - Developing deep learning and Bayesian probabilistic models integrating language, planning, and sensorimotor behaviors. - Investigating theories bridging between deep learning and Bayesian nonparametrics. Each PhD candidate is expected to contribute to a part of the project. *II. Candidate Profile* - Good mathematical background. - English communication skill for daily discussion and writing papers: IELTS 6 (TOEIC 740). - Programming skills in C++, Python, or Matlab for machine learning and intelligent robot. - Applicants are expected to be interested in natural language, language acquisition, and the human cognitive neural system of social behavior. *III. Application* Please send your application to (adm(a)em.ci.ritsumei.ac.jp) no later than *31 October 2016*, including: - List of publications. - Copies of 2 major publications. - Outline of past research (free format). - Motivation letter (free format). - Outline of prospective research (free format). - 2 Reference letters. Further details about the available positions and admission procedures are available on: *PhD Positions in Artificial Intelligence and Neuro-Cognitive Robotics <http://www.em.ci.ritsumei.ac.jp/info/call-for-phd-candidates-research-assis…>* . Ritsumeikan University is a fast growing international research environment with interdisciplinary research areas, and is the biggest private university in the west of Japan. The College of Information Science and Engineering is the biggest college in the field of Information Science in Japan, and the Graduate School is receiving a large number of KAKENHI Japanese governmental research grants. *IV. Related Papers* [1] Tadahiro Taniguchi, Shogo Nagasaka, Ryo Nakashima, Nonparametric Bayesian Double Articulation Analyzer for Direct Language Acquisition from Continuous Speech Signals, IEEE Transactions on Cognitive and Developmental Systems, Vol. PP (99) .(2016) DOI: 10.1109/TCDS.2016.2550591 [2] Tadahiro Taniguchi, Takayuki Nagai, Tomoaki Nakamura, Naoto Iwahashi, Tetsuya Ogata, and Hideki Asoh, Symbol Emergence in Robotics: A Survey, Advanced Robotics, Vol.30, (11-12) pp. 706-728 .(2016) DOI:10.1080/01691864.2016.1164622 ---------------------------------------------- Amir Aly, Ph.D. Postdoctoral Research Associate Emergent Systems Laboratory College of Information Science and Engineering - Ritsumeikan University 1-1-1 Noji Higashi, Kusatsu, Shiga 525-8577 Japan

1 0

International Workshop on Computational Psychiatry at KAIST (Sang Wan Lee)
by Sang Wan Lee Sept. 27, 2016

Sept. 27, 2016

We are pleased to host a single day workshop on computational psychiatry, entitled "Computational approaches to understanding memory, learning, decision making, and emotion processing". The brain is an immensely complex system, making it hard to account for the brain's high-level functions, such as cognitive, emotional, and social components. The impairments of these circuits often lead to mental illness. A new approach, dubbed as computational psychiatry, combines experiments with computational modelling to provide the means to prevent psychiatric disorders. This workshop discusses recent advances in applying neuroeconomics, computational neuroscience, artificial intelligence to the study decision making, learning and memory. A deeper insight into these functions is expected to permit development of model-based diagnosis of mental disorders. * List of speakers : Benedetto de Martino (University of Cambridge, UK) Robb Rutledge (University College London, UK) Shinsuke Suzuki (Tohoku University, Japan) Sukbin Lim (New York University Shanghai, China) Sang Wan Lee (KAIST, South Korea) * Date: OCT 5 Wednesday, 2016 * Venue: Dream Hall (1st floor), CHUNG Moon Soul building (E16), KAIST * Program: http://www.aibrainlab.com/cp2016/ (free registration) - Host: Department of Bio and Brain Engineering, KAIST - Organizer: Sang Wan Lee (inquiries: Hana Park, <mailto:hnpark@kaist.ac.kr> hnpark(a)kaist.ac.kr) -- Sang Wan Lee, Ph. D Assistant Professor Laboratory for Brain and Machine Intelligence Department of Bio and Brain Engineering, KAIST 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea +82-42-350-4334 sangwan(a)kaist.ac.kr <mailto:sangwan@kaist.ac.kr> http://aibrain.kaist.ac.kr

1 0

Two Postdoc Positions in Model-based fMRI and Machine Learning at KAIST (Sang Wan Lee)
by Sang Wan Lee Sept. 27, 2016

Sept. 27, 2016

*Postdoctoral positions in model-based fMRI and machine learning at KAIST* Two postdoctoral positions, funded through Samsung future technology foundation, are immediately available in the Laboratory for Brain and Machine Intelligence, led by Sang Wan Lee, at KAIST (http://aibrain.kaist.ac.kr/openings) The laboratory is affiliated with the department of Bio and Brain Engineering, Brain and Cognitive Engineering program, and KAIST Institute for Health Science and Technology (KIHST). The positions are initially appointed for one year, and may be extended for up to three years. We offer a competitive salary plus benefits. We also provide opportunities for working with our collaborators (refer to our website for more information). The project, AI-human coevolution engine, aims to develop a framework that boosts human learning and inference performance. It requires a combination of model-based neuroimaging techniques and a design of various learning algorithms. Research topics include model-based/model-free reinforcement learning, inductive/deductive/transitive inference, and one-shot learning. Details about the project is confidential, but the research proposal will be outlined during an interview. Qualifications (type1): - PhD in cognitive neuroscience, computational neuroscience, or physics - prior experience in (model-based) fMRI analysis is preferred. Qualifications (type2): - PhD in electrical engineering, computer science, or applied mathematics - strong quantitative background with expertise in machine learning The positions are open until filled. Interested please send a cover letter, a CV and a list of two references to sangwan(a)kaist.ac.kr. Applications will be reviewed on a rolling basis. -- Sang Wan Lee, Ph. D Assistant Professor Laboratory for Brain and Machine Intelligence Department of Bio and Brain Engineering, KAIST 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea +82-42-350-4334 sangwan(a)kaist.ac.kr <mailto:sangwan@kaist.ac.kr> http://aibrain.kaist.ac.kr

1 0

Faculty Positions in Applied Mathematics at Northwestern University
by William L. Kath Sept. 26, 2016

Sept. 26, 2016

The Department of Engineering Sciences and Applied Mathematics at Northwestern University (http://www.mccormick.northwestern.edu/applied-math/) invites applications for two full-time, tenure-track faculty positions. Hiring will be focused on the assistant professor level, although exceptional applicants at a more senior level will be considered. Requirements include a Ph.D. and demonstrated ability to conduct high-impact interdisciplinary research in applied mathematics. Candidates in all areas are encouraged to apply. We are seeking candidates with strong connections to applications who can enhance the breadth of research activities of the department. Duties involve teaching and research. The application package should include a curriculum vita, a statement of research accomplishments and interests, and a statement of teaching experience and philosophy. Send applications to https://facultysearch.mccormick.northwestern.edu/apply/index/ODg In addition, the applicant should arrange for at least three, but no more than four letters of recommendation. Recommendation letters will be automatically solicited from the letter writers by email after the names are entered in the online application system. Questions may be sent to esam-facultysearch(a)northwestern.edu (Subject line: 2017 Faculty Search). Review of applications will begin November 15, 2016, and will continue until the positions are filled. For further information, see: http://www.mccormick.northwestern.edu/applied-math/. Northwestern University is an Equal Opportunity, Affirmative Action Employer of all protected classes including veterans and individuals with disabilities. Women and minorities are encouraged to apply. Hiring is contingent upon eligibility to work in the United States. -- William L. Kath, Professor Engineering Sciences and Applied Mathematics McCormick School of Engineering, Northwestern University 2145 Sheridan Road, Evanston, IL 60208-3125 Phone: 847-491-8784 Fax: 847-491-2178

1 0

Reminder: deadline (October 1st 2016) approaching for manuscript submission to the Research Topic 'Burst coding: from cell to cognition'
by Fleur Zeldenrust Sept. 26, 2016

Sept. 26, 2016

This is a reminder: The deadline for manuscript submission to the Research Topic below is on Extended Article Submission Deadline: 01 Oct 2016 . Research Topic Title: Burst coding: from cell to cognition Topic Editor(s): Wytse J. Wadman, Fleur Zeldenrust, Bernhard Englitz Hosting Field: Frontiers in Neuroscience Journal: Frontiers in Computational Neuroscience Here are quick links to: - Manuscript guidelines: http://home.frontiersin.org/about/author-guidelines - Online submission: http://frontiersin.org/Computational_Neuroscience/researchtopics/Burst_codi… - List of article types and publishing fees: http://www.frontiersin.org/about/PublishingFees With best regards, Fleur Zeldenrust Guest Associate Editor, Frontiers in Computational Neuroscience Department of Neurophysiology Donders Centre for Neuroscience Faculty of Science, Radboud Universiteit Heyendaalseweg 135, postvak 33 6525 AJ Nijmegen tel +31 24 36 53195 www.frontiersin.org

1 0

Brainhack: Anatomy edition in Paris, 24-26 October 2016
by Anastasia Osoianu Sept. 24, 2016

Sept. 24, 2016

Registration is now open for Brain-anatomy-hack in Paris. Brain-anatomy-hack aims at promoting the interaction between scientists on questions concerning (1) the investigation of brain anatomy based on magnetic resonance imaging or post mortem dissection; (2) the evolution of nervous systems across species; (3) the variability of brain features across healthy participants; (4) the insurgence of brain pathologies. Program Each of the three days will begin with an “Ignite Session” in which speakers will give 15-30 minute talks that will address wide questions in neuroanatomy that would benefit from open, interdisciplinary collaborations. The “Ignite Session” will be followed by a “hack session” and a dynamic set of talks organized by attendees. During the “hack sessions”, participants will be encouraged to work together in small groups on relevant projects. The workshop will culminate on the last day, when participants will have the opportunity to present a brief overview of their project. Participants can bring their own dataset, discuss a project and recruit a team of collaborators on site. Access to free big online databases of MRI images will be also available during the three days, for new creative ideas to be tested. This workshop is also an opportunity to learn methods, develop skills and collaborate with other participants. Participants will be supervised and receive advice on methods from a team of very capable nerds including Roberto Toro, Michel Thiebaut de Schotten, Alexandros Goulas, Julien Lefèvre, Daniel Margulies and Leonardo Cerliani throughout the three days. A constant flow of food and drinks (especially coffee…) will be provided during the conference breaks. We kindly request an online preregistration (70€) in order to cover the expenses for the venue, the equipment and the food/drinks. Deadline is 16th of October 2016. For more information and preliminary schedule visit: http://neuroanatomy.github.io/events/brainhack/ To learn more about Brainhack and previous events: http://brainhack.org/

1 0

Job Posting--Senior Data Analyst--DiCarlo Lab
by Christopher Shay Sept. 23, 2016

Sept. 23, 2016

SENIOR DATA ANALYST Massachusetts Institute of Technology Brain and Cognitive Sciences McGovern Institute for Brain Research Lab of James J. DiCarlo http://dicarlolab.mit.edu/ <http://dicarlolab.mit.edu/> To develop and lead an open science framework for a small, but growing consortium of neuroscience research labs that together aim to build computational models of the brain’s visual processing system. Primary responsibilities are to (i.) develop and perform data packaging and analytics on visual neuroscience and behavioral psychophysics data, (ii.) implement existing and novel computational models of the visual system, and (iii.) build metrics and visualizations that quantitatively compare computational models to experimental data. The candidate will be based at the DiCarlo Lab at McGovern Institute for Brain Research at MIT. He or she will develop and implement standardized data formats, apply computational and statistical tools for data analysis, develop web-based graphical visualization interfaces to display results and present reports/results to the PIs, collaborators, and the research group. The data analyst will also oversee the lab’s local and remote computing hardware resources. REQUIRED: Bachelor’s degree, preferably in Computer Science or Software Engineering; Masters degree in (e.g.) Machine Learning, Statistics, or related field highly desirable; extensive familiarity with and high level of demonstrated competence in Python and Javascript absolutely required; working knowledge of C++ and C# languages highly desirable; minimum of five years’ experience with large-scale data-science activities, including organizing, analyzing, and synthesizing complex datasets to produce readable, informative automated web-based reports; demonstrated competence in modern data visualization tools such as Tableau, R, and D3.js; minimum of two years’ experience with large-scale database design and usage; minimum of two years' experience with building and maintaining a medium-to-large scale web-based application stack; experience with statistical languages/programming packages such as MATLAB (preferred), R, Stata, SPSS, or SAS highly desirable; experience with executing neural network feature extraction procedures on GPUs highly desirable. Demonstrated ability to partner with colleagues; ability to independently manage multiple projects/priorities while meeting changing deadlines, adapt to new technologies, and present information in a clear and cohesive manner; creative problem solving skills; ability to approach tasks with an eye toward efficiency and reproducibility; excellent written and oral communications skills; meticulous attention to detail; and proactive approach to investigative analysis. Experience in academic research, particularly computational neuroscience, is highly desirable. Christopher Shay, PhD Lab Manager DiCarlo Lab McGovern Institute Lab: (617) 452-3261 Fax:(617) 253-0104

1 0