September 2015 - Comp-neuro - lists.cnsorg.org

Re: [Comp-neuro] PhD Position - Florida International University
by Jorge Riera Diaz 18 Sep '15

18 Sep '15

Could you please advertise this PhD position through the NeuroInf-Comp-Neuro mailing list? Thanks in advance! Jorge _____________________________________________ From: Jorge Riera Diaz Sent: Tuesday, September 15, 2015 11:31 AM To: 'comp-neuro-bounces(a)neuroinf.org' Subject: PhD Position - Florida International University PhD Position Neuronal Mass Dynamics lab (https://nmd.fiu.edu/), Department of Biomedical Engineering, Florida International University Description: We are looking for a highly motivated PhD candidate to investigate the mechanisms underlying the Cortical Spreading Depression (CSD). CSD is a disorder of the brain characterized by a transient but complete loss of neuronal function and a complete breakdown in ionic homeostasis in affected brain areas. This disturbance spreads at speeds of 2-7mm/min across the brain. Despite efforts, the propagative agent the CSD wave remains controversial. Goal: The goal of the current research project is to develop a solid bridge between a comprehensive computational model and intracranial data (i.e. VSDI, LFP/MUA, LDF, and IOS) obtained from rats during induced-CSD propagation. The computational model, consisting of partial differential equations (PDEs) that describe voltage dynamics, electro-diffusion of ions and osmotic water flow in the central nervous system, as well as the numerical algorithm to integrate it, will be developed in collaboration with Dr. Yoichiro Mori at the University of Minnesota. Obtaining experimental data and developing algorithms for statistical inference on certain model parameters will constitute the core of the PhD thesis. Data from this study will be used to evaluate mechanisms and principles underlying the genesis of the LFPs, as well as the nature of the EEG and MEG current sources. Qualifications: The ideal candidate should have an interdisciplinary research background with experience in computational neuroscience, biophysical modeling and MATLAB programming. Background in experimental neurophysiology is desirable. Candidates with a MSc in Neuroscience, Biomedical Engineering, Electrical Engineering, Computational Neuroscience or related field will have preferences. This PhD position is supported by NSF funds. As part of this grant, the PhD student will be able to enjoy Summer Internships at the Department of Mathematics of the University of Minnesota. Position should start on summer 2016. However, there might be chances to expedite the entire recruitment process in order to start PhD-related activities on spring 2016. Stipend: $25,000 Tuition: Waived Don't miss this unique opportunity to perform high quality research surrounded by an excellent tropical environment, with incredible attractions and unexpected wonders in the Miami-Dade County. Extra opportunities are available for those interested in scuba diving and beach-related activities. Please, send your Resume to: Jorge Riera, PhD Associate Professor Dept. Biomedical Engineering Florida International University Miami, FL 33174 Tel: 305 348 4948 Email: jrieradi(a)fiu.edu<mailto:jrieradi@fiu.edu>

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Neuroinformatician Blog
by Mohammed Iftekhar 18 Sep '15

18 Sep '15

Dear All Neuroinformatician I found Neuroinformatician blog <http://neuroinfos.blogspot.in/p/neuroinformatics-tools.html> i.e http://neuroinfos.blogspot.in/p/neuroinformatics-tools.html which share software ,jobs,events,seminars,conferences,videos and many more resources which is use full for all Neuroscience professional scientist.I found this is very much use full for neuroscience group . so I am sharing the link with all neuroscience community .kindly share this blog information and share information from your side through this blog this can be made popular with the neuroscience professional and make neuroscience research success full. Thanks & Regards -- *Mohammed Iftekhar* *M: 07259699189* *E: iftubip(a)gmail.com <iftubip(a)gmail.com>*

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Academic faculty positions at Imperial College London.
by Simon Schultz 18 Sep '15

18 Sep '15

Dear all, There is an open hiring round in the Department of Bioengineering at Imperial College London. I would particularly like to encourage strong applications in translational neurotechnology. New hires would be invited to join the Centre for Neurotechnology (http://www.imperial.ac.uk/neurotechnology). The Centre for Neurotechnology hosts the EPSRC CDT in Neurotechnology for Life and Health (offering at least 12 fully funded 4-year PhD studentships per annum), as well as providing access to state of the art equipment and infrastructure for research at the interface between neuroscience and engineering. Best wishes, Simon Schultz -- Simon R Schultz BSc BE ME(Res) DPhil FIET FRMS Reader in Neurotechnology & Royal Society Industry Fellow Neural Coding Laboratory: http://www.schultzlab.org Department of Bioengineering, Imperial College London South Kensington, London SW7 2AZ, UK Director, Imperial College London Centre for Neurotechnology http://www.imperial.ac.uk/neurotechnology Administrator: Dr Kate Hobson, Phone: +44 207 594 5101 ** *Imperial College London*- Department of Bioengineering *Location:* City Of London *Salary:* £46,410 to £57,020 Per annum *Hours:* Full Time *Contract Type:* Permanent *Placed on:* 17th September 2015 *Closes:* 4th December 2015 *Job Ref:* EN20150321FH ** *Lecturer salary range £46,410 to £51,720 per annum* *Senior Lecturer minimum salary £57,020 per annum* Due to rapid growth and the strategic importance of the discipline of bioengineering at Imperial College London, the Department of Bioengineering wishes to appoint up to three new members of academic staff at Lecturer or Senior Lecturer grade. As part of the development of the Michael Uren Biomedical Engineering Research Hub <http://www3.imperial.ac.uk/newsandeventspggrp/imperialcollege/newssummary/n…>within one of the areas identified for growth. We are looking for candidates in the following fields of translational Bioengineering; .Neural Engineering; .Regenerative Medicine; .Synthetic Biology; .Musculoskeletal Bioengineering; .Cardiovascular Engineering; .Cancer Technology; and .Magnetic Resonance Imaging as applied to any of the areas above. Candidates should have an advanced degree (PhD or equivalent) in an appropriate science or engineering discipline and will have demonstrated an ability to generate and execute research at an internationally-leading level. Experience of teaching at all levels is also required. For an informal discussion please contact the Head of Department, Professor Anthony Bull: email a.bull(a)imperial.ac.uk or telephone 020 7594 5186. Our preferred method of application is online via our website at the following link: http://www3.imperial.ac.uk/employment(select "Job Search" and enter the job reference no.*EN20150321FH*). Please complete and upload the application form as directed. *As a requirement please submit up to 2 page documentation specifying your Research Vision Statement. Please identify on application which research area your application applies to.* /Imperial Managers lead by example./ <http://www3.imperial.ac.uk/hr/procedures/support/opportunities/expectations> *Interviews will take place during January 2016* /Committed to equality and valuing diversity. We are also an Athena SWAN Silver Award winner, a Stonewall Diversity Champion, a Two Ticks Employer, and are working in partnership with GIRES to promote respect for trans people/

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Faculty Positions in Applied Mathematics at Northwestern University
by Hermann Riecke 17 Sep '15

17 Sep '15

Northwestern's Department of Engineering Science and Applied Mathematics is seeking to fill two tenure-track faculty positions in Applied Mathematics (starting date Sep 1, 2016). For details, please see http://www.mccormick.northwestern.edu/applied-math/job-opportunities.html Hermann Riecke

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new MATLAB toolbox for Multivariate Transfer Entropy: MuTE
by Alessandro Montalto 16 Sep '15

16 Sep '15

Dear all, I am very pleased to announce the availability of my brand new MATLAB toolbox to detect directed dynamical influences among time series. This new open source software implements four entropy estimators in both uniform and non-uniform embedding approaches. MuTE can perform analyses running some or all methods in parallel sessions. The user should only set the parameters related to the kind of analysis and the specific method/s chosen to assess the directed dynamical influences. For further explanations about the methods and how to set MuTE, please visit the website http://mutetoolbox.guru/ where you can also find the link to the paper that describes MuTE and the link to download it at the following address: http://mutetoolbox.guru/downloads/ Subscribe to the newsletter if you want to be kept updated about future updates of MuTE or follow the toolbox improvements through - twitter: https://twitter.com/mutetoolbox - facebook: https://www.facebook.com/mutetoolbox Best regards, Alessandro Montalto

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NEUROMOD: submission deadline extended (final call)
by Jaime Ibánez Pereda 16 Sep '15

16 Sep '15

Apologies for multiple postings ************************************************************ Dear colleagues, After numerous requests, the submission deadline for NEUROMOD'2015 has been extended until "September 25, 2015". Below you can find the details of the Symposium. *CALL FOR PAPERS* “Symposium on Neuromodulation-based Approaches for Neural Rehabilitation -NEUROMOD 2015” (http://www.neurotechnix.org/neuromod.aspx) In conjunction with the Neurotechnix conference, November 16-17, 2015, Lisbon. *IMPORTANT DATES:* Paper Submission: Extended to September 25th, 2015 Authors Notification: October 6, 2015 Camera Ready and Registration: October 13, 2015 *DETAILS:* Neuromodulation is a rapidly-growing field, encompassing the application of targeted electrical/chemical/biological stimuli to the nervous system in order to improve function and quality of life. At present, an increasing number of implantable and non-invasive techniques are being proposed and made available to the clinicians, to stimulate CNS plasticity and foster recovery from motor, neurological and psychiatric disorders. Advancing in the field of neuromodulation represents challenges to build accurate neurophysiological models, understanding mechanisms of neuromodulation at cellular and systems levels, defining optimal engineering methodologies, and developing clinical application to treat patients. This session provides an opportunity for researchers/engineers/clinicians to present and discuss novel neurorehabilitation paradigms based on neuromodulation targeted at the spinal and/or supraspinal level. Top quality papers at NEUROMOD will be eligible for inclusion in the post-congress IOP journal of best papers or even for the best-paper award to be presented at the main congress, NEUROTECHNIX. *SUBMISSION GUIDELINES:*Authors should submit either a complete paper or a two-page abstract. The link to upload your contribution is: http://www.neurotechnix.org/NEUROMOD.aspx. *ORGANIZERS*: Stefano Piazza, Neural Rehabilitation Group, CSIC, Spain Jaime Ibáñez, Neural Rehabilitation Group, CSIC, Spain Julian Taylor, HNP Toledo, Spain and Stoke Mandeville Spinal Research, United Kingdom

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Job posting - Research Assistant/Data Analyst | Stanford University School of Medicine
by Manish Saggar 16 Sep '15

16 Sep '15

[Apologies for cross-posting] The Center for Interdisciplinary Brain Sciences Research (CIBSR) in the department of Psychiatry at Stanford University School of Medicine is seeking a full-time Research Assistant (Non-Clinical) to help with analyzing large-scale neuroimaging (fMRI/NIRS/EEG) and behavioral datasets from both healthy and patient populations. Responsibilities will include:-Developing software/scripts to implement algorithms for data control, data preprocessing/analysis, database management and coordinating data-sharing initiatives-Developing/running machine learning algorithms to better understand high-dimensional datasets-Assisting in analyzing research data using specific fMRI Neuroimaging programs and/or software (e.g., FSL, AFNI). -Helping with designing and developing novel neuroimaging paradigms for data collection-Collecting new neuroimaging/behavioral data Applicants should have:-B.S. (or higher) in electrical engineering, biomedical engineering, computer science, or other related scientific fields-Strong programming skills in Python, Matlab, or similar languages.-Experience with data science related projects-Prior research experience (preferred)-Experience with UNIX Operating systems (e.g., Linux, Mac OSX) and shell scripting (preferred) General Info: -The applicant will work closely with the team of faculty, post-docs, and research coordinators to track project progress, meet deadlines, anticipate project needs and communicate with project collaborators outside of the lab, train and supervise undergraduate students to assist with data processing, and train other staff as needed. -May require extended or unusual work hours based on research requirements and business needs. Salary and Anticipated Start Date: -Salary is competitive and commensurate with experience/educational qualifications. Anticipated Start Date is immediate. Application details: - Please email Manish Saggar (saggar(a)stanford.edu) to apply, please include a CV including the names of 3 references with your inquiry.

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Research Assistant in Neuro-imaging Technology
by Wong-Lin, Kongfatt 15 Sep '15

15 Sep '15

The Functional Brain Mapping (FBM) facility at the Intelligent Systems Research Centre (ISRC), Ulster University, has an available 2-year fixed term Research Assistant in Neuro-imaging Technology post. Duties and responsibilities of the successful postholder will include conducting periodic tests, maintenance of magnetoencephalography (MEG) system, and management of patients while ensuring their safety. S/he will assist with the supervision of health and safety, risk management, and standard operating procedures pertaining to all activities in the FBM facility. Interested applicants are welcomed to apply at: http://www.jobs.ac.uk/job/ALX092/research-assistant-in-neuro-imaging-techno… Please note that the closing date is on the 30th September 2015. All applicants should hold a degree in bio-medical engineering, medical physics, neuroscience, psychology, medicine, biomedical sciences or a closely related discipline, or a higher degree in the same or related subjects. Applicants are expected to be trained in the fundamentals and applications of MEG technology, and have clinical experience in a MEG lab used as part of a neurophysiology clinic. Successful applicants will be based primarily at the FBM facility at the ISRC with opportunities to interact with other related research teams and clinicians. ------ Dr. KongFatt Wong-Lin Intelligent Systems Research Centre, School of Computing and Intelligent Systems, Faculty of Computing and Engineering, Ulster University, UK ________________________________ This email and any attachments are confidential and intended solely for the use of the addressee and may contain information which is covered by legal, professional or other privilege. If you have received this email in error please notify the system manager at postmaster(a)ulster.ac.uk and delete this email immediately. Any views or opinions expressed are solely those of the author and do not necessarily represent those of Ulster University. The University's computer systems may be monitored and communications carried out on them may be recorded to secure the effective operation of the system and for other lawful purposes. Ulster University does not guarantee that this email or any attachments are free from viruses or 100% secure. Unless expressly stated in the body of a separate attachment, the text of email is not intended to form a binding contract. Correspondence to and from the University may be subject to requests for disclosure by 3rd parties under relevant legislation. The University of Ulster was founded by Royal Charter in 1984 and is registered with company number RC000726 and VAT registered number GB672390524.The primary contact address for Ulster University in Northern Ireland is Cromore Road, Coleraine, Co. Londonderry BT52 1SA

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FINAL Call for Papers (EXTENDED deadline till 1 Oct 2015): 7th International Conference on Brain Inspired Cognitive Systems (BICS), 11-13 Dec 2015, Hefei, China
by Dr Amir Hussain 15 Sep '15

15 Sep '15

On popular demand, the paper submission DEADLINE has been EXTENDED till 12:00 GMT, 1ST OCTOBER 2015 - for details, see the BICS'2015 (Final) Call for Papers below (with ISI-SCI journal ONLY conference proceedings!) With apologies for any cross-postings, please help circulate this final CFP to friends and colleagues. Thank you in advance. BICS'2015 CFP website: http://www.cs.stir.ac.uk/events/bics2015/cfp_e.html (ALL papers accepted (after a rigorous peer-review process) for presentation at the Conference will be published in the leading ISI-SCI indexed Springer journal: Cognitive Computation (http://springer.com/12559) as a multi-part Special Issue! - for more details, see the conference website, and below) Introduction to BICS'2015: The seventh 2015 International Conference on Brain Inspired Cognitive Systems (BICS 2015) will be held on December 11-13, 2015, in Hefei, Anhui, China, as a sequel of BICS 2004 - 2013. The first BICS 2004 was held in Stirling, Scotland, UK and the last BICS 2013 was held in Beijing, China, 9-13 June 2013 (http://www.conference123.org/bics2013/). The aim of BICS 2015 is to provide a high-level international forum for scientists, engineers, and educators to present the state-of-the-art of brain inspired cognitive systems research and applications in diverse fields. The conference will feature plenary lectures given by world renowned scholars, regular sessions with broad coverage, and special sessions focusing on popular and timely topics. Proceedings Information: BICS 2015 will be unique in that there will be no conference proceedings. ALL accepted papers will be published (following a rigorous peer review process) in the leading ISI-SCI indexed Springer journal: Cognitive Computation (http://springer.com/12559), as a multi-part Special Issue. Conference Location The conference will be held in Anhui University in Hefei, China. Hefei, formerly known as Hofei, Luzhou, or Luchow, is the capital and largest city of Anhui Province in Eastern China. Hefei Xinqiao International Airport provides scheduled passenger service to major airports in China and international cities as well. Hefei plays an important role in scientific research in China. It has seven national laboratories, second only to Beijing. We would be delighted to welcome you to Hefei in December. For more details on the venue, including travel information, see: http://www.cs.stir.ac.uk/events/bics2015/venue_e.html Important Dates (Final Call for Papers) Full paper submission: EXTENDED TILL 1 October 2015 (1200 GMT) First notification: 31 October 2015 Conference Dates: 11-13 December 2015 Revised/final manuscripts due: 31 December 2015 BICS'2015 Issue Publication Date: early 2016 Paper Submission: All prospective authors are invited to submit full-length papers (10-15 pages maximum) through the online Springer submission system (selecting the BICS2015 Special Issue), with a covering letter indicating the paper is being submitted for BICS'2015 (hhttp://www.editorialmanager.com/cogn/ <http://www.editorialmanager.com/cogn/>) - please indicate the relevant BICS Symposium name (see topics list on the Conference website). The submission of a paper implies that the paper is original and has not been submitted under review or copyright protected elsewhere. The authors of accepted papers will have an opportunity to revise their papers. If the paper is accepted, at least one of the authors listed on the paper (or his/her representative) must attend the conference and present the paper. On behalf of: BICS'2015 General co-Chairs: Professor Amir Hussain (University of Stirling, Scotland, UK) and Professor Bin Luo (Anhui University, China) and BICS'2015 Organizing Committee ( http://www.cs.stir.ac.uk/events/bics2015/committee_e.html ) For any enquiries, please email: ahu(a)cs.stir.ac.uk or luobin(a)ahu.edu.cn -- The University is ranked in the QS World Rankings of the top 5% of universities in the world (QS World University Rankings, 2014) The University of Stirling is a charity registered in Scotland, number SC 011159.

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SECOND CALL FOR PAPERS
by Roman Poznanski 15 Sep '15

15 Sep '15

SPECIAL ISSUE ON RETINAL MECHANISMS UNDERLYING MOTION PERCEPTION IN VERTEBRATES JOURNAL OF INTEGRATIVE NEUROSCIENCE This call for papers is dedicated to the work of Vaxim Maximov on the general theme of retinal direction selectivity in vertebrates. All papers are welcome that describes neurophysiology and neural modelling of retinal circuitries underlying motion perception. Some suggestions: 1. Can asymmetry be justified based on anatomical studies showing less inhibitory synapses between SAC and DSGC in the null direction? 2. Is endoplasmic reticulum as a source of calcium heterogeneity underlying DS in SAC? 3. Is calcium bias to somatofugal motion due to intrinsic properties of SAC or is calcium bias in centrifugal motion caused by presynaptic delay in glutamate receptor activation induced calcium? 4. Are SACs are connected asymmetrically to DSGCs: those pointing in the null direction deliver inhibition; those pointing in the preferred direction do not? 5. Is intracellular calcium signal and not the membrane potential (voltage) directionally selective? 6. Direction-selective circuitry in the fish visual system – properties of direction selective units in retina and tectum opticum. 7. Properties of direction selective units in accessory optic systems of lower vertebrates. 8. Modeling of receptive fields of retinal detectors underlying motion perception in fish. Some of the contributing papers for the special issue include: 1. Amane Koizumi, Satoru Moritoh and Roman R. Poznanski (2015) Can heterogeneity of intracellular calcium dynamics underlie directional selectivity in starburst amacrine cells? 2. Ehud Pinsky, Opher Donchin and Ronen Segev (2015) Pharmacological study of direction selectivity in the archer fish retina. 3. Ilija Damjanović (2015) Direction-selective units in goldfish retina and tectum opticum – review and new aspects. 4. Elena M. Maximova, Pavel V. Maximov, Ilija Damjanović, Alexey T. Aliper and Vadim V. Maximov (2015) Color properties of the motion detectors projecting to the goldfish tectum: III. Color-opponent interactions in the receptive field. 5. Vladimir A. Bastakov, Elena Kiseleva, Oleg Yu. Orlov (2015) Direction-selective units in the frog’s nucleus of basal optic root. SUBMISSION 30 September 2015 Contact: Dr. Illija Damjanović, damjanov(a)iitp.ru<mailto:damjanov@iitp.ru> ------- Roman R. Poznanski Professor Laboratory of Biological Modeling The Rockefeller University 1230 York Avenue New York, NY 10065-6399 Office: (212) 327-7646 E-mail: rpoznanski(a)rockefeller.edu http://romanpoznanski.blogspot.com and Chief-Editor, Journal of Integrative Neuroscience http://www.worldscinet.com/jin/mkt/editorial.shtml

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