October 2015 - Comp-neuro - lists.cnsorg.org

15 PhD positions for PACE, an EU funded Innovative Training Network for understanding Perception and Action in Complex Environments
by Laurent Perrinet 19 May '16

19 May '16

Dear colleagues, PACE (Perception and Action in Complex Environments) is an Innovative Training Network funded by the Marie Sklodowska-Curie program of the European Union starting on April 1st, 2015. The network involves 10 academic and private full partners, from 6 European and associated countries (France, Spain, Italy, Netherlands, UK, Israel), plus 5 associated partners (private companies and public organizations). The network gathers a broad range of expertise from experimental psychology, cognitive neurosciences, brain imaging, technology and clinical sciences as well as transferable skills. The PACE network promotes interdisciplinary research and training in the field of human movement sciences with a strong emphasis on perception-action coupling in complex environments. We focus on changes of this coupling across lifespan and in pathological diseases affecting the nervous system. The goal is to train PhD students through collaborative research projects, international courses and workshops. -> 15 PhD positions, starting next fall, are offered across the different network sites. You can find a short description of the proposed PhD projects at the following link: http://www.int.univ-amu.fr/IMG/pdf/PACE_Table_positions.pdf Applications are welcome immediately and until the end of May (but some specific timing constraints may be enforced in some of the partners' sites: please get more information from local contacts). You will find further general information (sections 1 to 3), eligibility and application conditions (section 4) here: http://www.int.univ-amu.fr/-ITN-Marie-Curie-network-PACE Thanks for distributing this announcement to potential candidates, Laurent -- Laurent Perrinet - INT (UMR 7289)/CNRS http://invibe.net/LaurentPerrinet

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NEURAL COMPUTATION - April, 2014
by Terry Sejnowski 24 Apr '16

24 Apr '16

Neural Computation - Contents -- Volume 26, Number 4 - April 1, 2014 Available online for download now: http://www.mitpressjournals.org/toc/neco/26/4 ----- Article Parametric Inference in the Large Data Limit Using Maximally Informative Models Justin Block Kinney, Gurinder Singh Atwal Letters Input Statistics and Hebbian Crosstalk Effects Anca R. Radulescu Learning Nonlinear Regularities in Natural Images by Modeling the Outer Product of Image Intensities Peng Qi, Xiaolin Hu Dissociable Forms of Repetition Priming: A Computational Model Kirill Makukhin, Scott Bolland Refined Rademacher Chaos Complexity Bounds With Applications to the Multi-Kernel Learning Problem Yunwen Lei, Lixin Ding Large Margin Low Rank Tensor Analysis Guoqiang Zhong, Mohamed Cheriet Large-scale Linear RankSVM Ching-Pei Lee, Chih-Jen Lin ------------ ON-LINE -- http://www.mitpressjournals.org/neuralcomp SUBSCRIPTIONS - 2014 - VOLUME 26 - 12 ISSUES USA Others Electronic Only Student/Retired $70 $193 $65 Individual $124 $187 $115 Institution $1,035 $1,098 $926 Canada: Add 5% GST MIT Press Journals, 238 Main Street, Suite 500, Cambridge, MA 02142-9902 Tel: (617) 253-2889 FAX: (617) 577-1545 journals-orders(a)mit.edu ------------

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v5.7 of NeuroMorpho.Org released on 30 May, 2014
by NeuroMorpho Administrator 10 Mar '16

10 Mar '16

Version 5.7 of NeuroMorpho.Org was released on 30 May, 2014. The release included 29 new data sets (1341 reconstructions), including from three new animal species (dragonfly, moth, and sheep). The database now contains 11,335 reconstructions from 144 contributing labs. More than 3.2 million reconstructions were downloaded in over 130,000 unique visits from 146 countries. Please visit the What's new<http://neuromorpho.org/neuroMorpho/WIN.jsp> page for details on data included in this release, including new species strains, brain regions, cell types, and experimental conditions. The Acknowledgements <http://neuromorpho.org/neuroMorpho/acknowl.jsp> include details on contributing labs, and the About<http://neuromorpho.org/neuroMorpho/about.jsp> page provides an updated overview of the repository content. A new user-friendly functionality, OntoSearch<http://neuromorpho.org/neuroMorpho/OntoSearch.jsp>, was introduced in this release, enabling more powerful searches of species and strains with automated synonym translation, taxonomical relations, and keyword auto-completion. The literature coverage database was also updated to include publications through March 2014. We are continuously grateful to all the data owners who freely share their data with the community. We always appreciate any and all feedback and comments. Sincerely, The NeuroMorpho.Org team -- Ruchi Parekh, Ph.D. NeuroMorpho.Org Project Lead Postdoctoral Research Fellow Center for Neural Informatics, Structures, and Plasticity Krasnow Institute for Advanced Study MS2A1, George Mason University Fairfax, VA 22030 (USA) Ph - +1-703-993-4382<tel:%2B1-703-993-4382> www.neuromorpho.org<http://www.neuromorpho.org/> nmadmin(a)gmu.edu<mailto:nmadmin@gmu.edu>?

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FACULTY POSITION IN QUANTITATIVE LIFE SCIENCES AT ICTP, TRIESTE ITALY
by Matteo Marsili 14 Jan '16

14 Jan '16

FACULTY POSITION IN QUANTITATIVE LIFE SCIENCES AT THE ABDUS SALAM INTERNATIONAL CENTRE FOR THEORETICAL PHYSICS (ICTP). ICTP is seeking applicants for a new faculty position in its recently established Quantitative Life Sciences (QLS) research section. QLS responds to the theoretical challenges arising from recent advances in large-scale experiments in biology and neurosciences. The successful applicant will play a leading role in establishing the new section, promoting cutting-edge research in quantitative biology and supervising graduate students. Areas of interest include systems biology, biological networks, systems and computational neuroscience. Applicants should have an outstanding international reputation with at least 4 years of scientific research experience. The position, which will start in October 2015, will be at the P3 UNESCO level, with a starting salary of $78100. Other benefits include family allowance, home travel, education grant for dependent children, pension plan and medical insurance. Full details of the position, along with a link to the UNESCO online application, are available on ICTP's employment webpage and at http://www.ictp.it/about-ictp/personnel-office/employment.aspx <http://www.ictp.it/about-ictp/personnel-office/employment.aspx> The deadline is 3 June 2015. For further information please contact ICTP's Personnel Office at personnel_office(a)ictp.it <mailto:personnel_office@ictp.it>. ICTP, based in Trieste, Italy, provides a top class multi-disciplinary research environment in theoretical sciences, with cutting edge research, education and training, and it has been a driving force behind global efforts for the advancement of science in the developing world.

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Announcing the first NESTML community workshop
by Jochen Martin Eppler 10 Nov '15

10 Nov '15

Announcing the first community workshop on NESTML, the novel modelling language to create neuron models for the NEST simulator for spiking neuronal networks (nest-simulator.org) Abstract ^^^^^^^^ Currently, neuron and synapse models in NEST are written as C++ classes. These classes implement the simulator API for updating the neuronal dynamics, sending and receiving events, and auxiliary tasks such as initialization, recording of internal variables, calibration and handling of parameters. As the model code is hand-written and often created by copy and paste, this method is prone to errors and hinders the programmatic re-use of components such as neuronal dynamics, post-synaptic responses and synaptic plasticity mechanisms. Moreover, as many neuroscientists are not experts in C++, the process of creating models is often seen as complicated and in many cases the resulting model implementations are not optimal with respect to performance, consistency and testability. To ease writing models for NEST and improve the general quality of the code, we have created the NEST Modelling Language. NESTML comprises a language specification to describe neuron models in terms of neuroscience concepts and a set of tools to generate efficient C++ code for NEST from this description. During the workshop, we will give a general introduction to model creation for NEST and an in-depth introduction to the concepts and application of NESTML. In hands-on sessions the participants have the opportunity to write their own models in NESTML with the assistance of experienced tutors. The feedback collected in a dedicated session will be used to shape the future design and development of NESTML. Target Audience ^^^^^^^^^^^^^^^ The workshop aims at students and researchers in computational neuroscience who want to create their own neuron models in NEST. Some understanding of programming and experience with one of the simulators NEST, NEURON, or Brian will be helpful, but are not strictly required. Location and date ^^^^^^^^^^^^^^^^^ The workshop will take place at the Chair of Software Engineering (se-rwth.de) of RWTH Aachen University from Monday, December 7 to Wednesday, December 9, 2015. Details and registration Workshop attendance is possible free of charge. However, in order to be able to plan rooms, lunches and coffee breaks, we require registration. For details and enrolment, visit www.fz-juelich.de/ias/jsc/nestml-ws. With best regards, Jochen! -- Dr. Jochen Martin Eppler Phone: +49 2461 61-9471 ---------------------------------- Simulation Laboratory Neuroscience Jülich Supercomputing Centre Institute for Advanced Simulation ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

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PhD positions in computational neuroscience
by Dan Goodman 02 Nov '15

02 Nov '15

One or more PhD positions in computational neuroscience are available in the Neural Reckoning Group of Dan Goodman at the Department of Electrical and Electronic Engineering, Imperial College London. I am interested in supervising students with a strong mathematical, computational or neuroscience background. Projects could be carried out in several possible areas, including neuroinformatics (i.e simulation and analysis of neural data) or sensory neuroscience (e.g. spiking neural models in the auditory system). For more information about the group, including some suggestions for research topics, see http://neural-reckoning.org/openings.html. In addition to working within the group, studying at Imperial College provides excellent opportunities for interacting with other theoretical and experimental researchers, both at Imperial (recently ranked 2nd in the world in the QS world university rankings) and in the many neuroscience groups in London. Applicants should initially send me a brief CV and cover letter with a description of research interests or a proposed project, and will eventually have to formally apply through the standard Imperial College mechanism (for more information, see http://www3.imperial.ac.uk/electricalengineering/courses/phd) Funding is available for at least one student, and there are several competitive funding schemes at Imperial which would provide funding for additional students. Also, please forward this message on to any of your students or colleagues with students that you think may be interested. Dan Goodman

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Focus session on sensorimotor circuits at 2016 APS March Meeting
by Tatyana Sharpee 30 Oct '15

30 Oct '15

Dear Colleagues, Please consider submitting an abstract for the next APS March Meeting, and i n particular, for the Focus Session "Physics of Sensorimotor Neural Circuits .” The meeting will take place in Baltimore, MD, on March 14-18, 2016. Abstract submission deadline: November 6, 2015, 5:00pm EST You can submit abstracts for CONTRIBUTED TALKS for this Focus Session and ot hers (see below for a list of session especially relevant to neuroscience). As a session organizer, I’d like to invite you to submit exciting new work o n sensory and/or motor neural systems. The focus session will consist of 2 i nvited talks and ~8 contributed talks. Submission and relevant information is through the APS site: http://www.aps.org/meetings/march/scientific/index.cfm Please note that only APS members (or members of reciprocal societies) can s ubmit the abstracts. You can obtain your membership online. Invited and Focus sessions of relevance to neuroscience will include, among others, 1. Large Scale Neuroscience Projects 2. Theoretical physics and networks of real neurons 3. Inference in Biophysics 4. Principles of Cell-to-Cell communication 5. Brain Morphology and Mechanics: From Cortex Folding to Neuronal Growth to Compression Stiffening 6. Robophysics: physics meets robotics 7. Physics of sensorimotor neural circuits 8. Neural control of behavior 9. Maximum entropy models: a promising link between statistical physics, inf erence, and biology 10. Critical transitions in biological systems Some of the invited speakers include: Vijay Balasubramanian (U Pennsylvania) William Bialek (Princeton U) Gwyneth Card (Janelia Farm) David van Essen (Washington U, St. Loius) Adrienne Fairhall (U Washington) Surya Ganguli (Stanford U) Mark Goldman (UC Davis) Alexei Koulakov (CSHL) Thierry Mora (ENS) Stephanie Palmer (U Chicago) Hanchuan Peng (Allen Institute) Elad Schneidman (Hebrew U) Terry Sejnowski (Salk Institute) Naftali Tishby (Hebrew U) Gasper Tkacik (IST Austria) and others. We are now accepting abstract submissions for contributed talks on a broad range of topics on the intersection of physics and neuroscience, such as quantitative experimental protocols, modeling of neural dynamics, analysis of collective computation in neural circuits, and others. Best Regards, Tatyana Tatyana O. Sharpee, PhD Associate Professor Helen McLoraine Developmental Chair Computational Neurobiology Laboratory Salk Institute for Biological Studies La Jolla, CA 92037

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Graduate training in Perception, Brain, & Behavior at UT Austin
by Mary Hayhoe 30 Oct '15

30 Oct '15

Graduate training in Perception, Brain, & Behavior at UT Austin The program in Perception, Brain & Behavior at The University of Texas at Austin is encouraging applications for interdisciplinary graduate study in vision sciences, with emphasis on naturalistic tasks and stimuli. Housed in the Department of Psychology, the Institute for Neuroscience, and the Center for Perceptual Systems, our program is a vibrant, growing, and highly-collaborative collection of research laboratories boasting world-class facilities for conducting research in visual perception, visually guided actions, and the underlying neural mechanisms. These facilities include fMRI, eye tracking, head and body tracking, face and facial expression tracking, virtual reality, the collection of 3D time-varying natural scene statistics, computationally-intensive modeling and computer graphics, psychophysics, 2 photon microscopy, optical imaging, and electrophysiology. Funding opportunities are available through an NIH training grant, Research Assistantships, Fellowships, and Teaching Assistantships. Faculty actively engaging in interdisciplinary research in the program include: Dana Ballard: computational neuroscience, machine learning, visuo-motor control Larry Cormack: natural tasks and psychophysics; 3D motion perception Ila Fiete: computational neuroscience, neural coding Bill Geisler: vision and natural scene statistics; computational modeling Mary Hayhoe: eye movements, attention, virtual environments. Alex Huk: sensory-motor decisions, neural mechanisms of motion and depth perception Ian Nauhaus: neural coding, cortical organization, computational neuroscience Nicholas Priebe: neural coding in early visual cortex, intracellular recording Eyal Seidemann: optical imaging and electrophysiology of early visual cortex Max Snodderley: retina and early visual cortex, retinal disease. More information on our research can be found at www.cps.utexas.edu, and we encourage you to contact investigators directly if you are interested in their research. You can apply via the Ph.D. programs in Neuroscience http://neuroscience.utexas.edu/program/ 512-471-3640, neuroscience(a)mail.clm.utexas.edu and Psychology http://www.psy.utexas.edu/psy/GradProgram/gradhome.html 512-471-6398, gradoffice(a)psy.utexas.edu Mary Hayhoe Center for Perceptual Systems University of Texas Austin 108 E. Dean Keeton Blvd, Stop A8000 Austin TX 78712-1043 hayhoe(a)utexas.edu

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Cognitive and Information Sciences Ph.D. Program - University of California, Merced
by David Noelle 29 Oct '15

29 Oct '15

The Cognitive and Information Sciences graduate program at the University of California, Merced has positions available for Ph.D. students entering Fall 2016. We offer interdisciplinary training in human neural, behavioral, and social processes and their dynamics. The program is research-intensive, and a wide range of projects and collaborations are available for students to join, and take on leading roles as they progress through the program. Topics include language, speech, communication, movement coordination, interpersonal interaction, human-computer interaction, philosophy of mind, philosophy of cognitive science, memory, executive control, search, neural networks, learning, and dynamical and complex systems. The word “information” in CIS denotes our emphases on data science and engineering, computational modeling, and technological applications that support and even emulate intelligent behaviors. Students who graduate from our Ph.D. program have career opportunities in academia as well as technology industries. Please visit our program website for information about CIS: http://cogsci.ucmerced.edu/ Applications may be submitted through the graduate division website: http://graduatedivision.ucmerced.edu/ For full consideration, applications should be received by December 15, although we will continue to accept applications until January 15. Top candidates will be invited and reimbursed to visit the campus February 5-6, to meet with our faculty and students and learn more about the program. Multi-year offers of financial support are available, which include full tuition and competitive stipends. If you have any further questions, please email the faculty member(s) who most closely align with your research interests.

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Mechanization of Consciousness for the Development of Strong AI
by Lleuvelyn Cacha 29 Oct '15

29 Oct '15

*Dear Colleagues,* This book is suitable for anyone interested in strong AI *Biophysics of Consciousness: A Foundational Approach* http://www.worldscientific.com/worldscibooks/10.1142/9444 650pp Feb 2016 ISBN: 978-981-4644-25-9 (hardcover) Normal price * USD158.00* *Contents:* · Preface · Foreword: Addressing the Hard Problem of Consciousness · Contents · Neurobiological Naturalism · The Evolutionary Origins of Consciousness · How Language Evolution Reshaped Human Consciousness · Consciousness by Surprise: A Neuropsychoanalytic Approach to the Hard Problem · Can Qualitative Biophysics Solve the Hard Problem? · The Causal Roots of Integration and the Unity of Consciousness · The Holoinformational Foundations of Consciousness · Neural Transition Dynamics and Conscious Perceptive States · The Two-Brains Hypothesis: Implications for Consciousness · The Origins of the Brain's Endogenous Electromagnetic Field and Its Relationship to Provision of Consciousness · Consciousness as a Quantum Dynamic Effect · Quantum Spin Formalism on Consciousness · The 'Quantum Underground': Where Life and Consciousness Originate · Consciousness in the Universe — An *Updated* Review of the 'Orch OR' Theory · Index *Readership:* Researchers in neuroscience, cognitive science, biophysics, quantum physics and strong AI. Available for Amazon books at a Pre-order Price Guarantee USD$*100.62* http://www.amazon.com/Biophysics-Consciousness-A-Foundational-Approach/dp/9… Lleuvelyn Cacha, PhD

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