January 2015 - Comp-neuro - lists.cnsorg.org

NEURAL COMPUTATION - April, 2014
by Terry Sejnowski 24 Apr '16

24 Apr '16

Neural Computation - Contents -- Volume 26, Number 4 - April 1, 2014 Available online for download now: http://www.mitpressjournals.org/toc/neco/26/4 ----- Article Parametric Inference in the Large Data Limit Using Maximally Informative Models Justin Block Kinney, Gurinder Singh Atwal Letters Input Statistics and Hebbian Crosstalk Effects Anca R. Radulescu Learning Nonlinear Regularities in Natural Images by Modeling the Outer Product of Image Intensities Peng Qi, Xiaolin Hu Dissociable Forms of Repetition Priming: A Computational Model Kirill Makukhin, Scott Bolland Refined Rademacher Chaos Complexity Bounds With Applications to the Multi-Kernel Learning Problem Yunwen Lei, Lixin Ding Large Margin Low Rank Tensor Analysis Guoqiang Zhong, Mohamed Cheriet Large-scale Linear RankSVM Ching-Pei Lee, Chih-Jen Lin ------------ ON-LINE -- http://www.mitpressjournals.org/neuralcomp SUBSCRIPTIONS - 2014 - VOLUME 26 - 12 ISSUES USA Others Electronic Only Student/Retired $70 $193 $65 Individual $124 $187 $115 Institution $1,035 $1,098 $926 Canada: Add 5% GST MIT Press Journals, 238 Main Street, Suite 500, Cambridge, MA 02142-9902 Tel: (617) 253-2889 FAX: (617) 577-1545 journals-orders(a)mit.edu ------------

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v5.7 of NeuroMorpho.Org released on 30 May, 2014
by NeuroMorpho Administrator 10 Mar '16

10 Mar '16

Version 5.7 of NeuroMorpho.Org was released on 30 May, 2014. The release included 29 new data sets (1341 reconstructions), including from three new animal species (dragonfly, moth, and sheep). The database now contains 11,335 reconstructions from 144 contributing labs. More than 3.2 million reconstructions were downloaded in over 130,000 unique visits from 146 countries. Please visit the What's new<http://neuromorpho.org/neuroMorpho/WIN.jsp> page for details on data included in this release, including new species strains, brain regions, cell types, and experimental conditions. The Acknowledgements <http://neuromorpho.org/neuroMorpho/acknowl.jsp> include details on contributing labs, and the About<http://neuromorpho.org/neuroMorpho/about.jsp> page provides an updated overview of the repository content. A new user-friendly functionality, OntoSearch<http://neuromorpho.org/neuroMorpho/OntoSearch.jsp>, was introduced in this release, enabling more powerful searches of species and strains with automated synonym translation, taxonomical relations, and keyword auto-completion. The literature coverage database was also updated to include publications through March 2014. We are continuously grateful to all the data owners who freely share their data with the community. We always appreciate any and all feedback and comments. Sincerely, The NeuroMorpho.Org team -- Ruchi Parekh, Ph.D. NeuroMorpho.Org Project Lead Postdoctoral Research Fellow Center for Neural Informatics, Structures, and Plasticity Krasnow Institute for Advanced Study MS2A1, George Mason University Fairfax, VA 22030 (USA) Ph - +1-703-993-4382<tel:%2B1-703-993-4382> www.neuromorpho.org<http://www.neuromorpho.org/> nmadmin(a)gmu.edu<mailto:nmadmin@gmu.edu>?

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PhD positions in computational neuroscience
by Dan Goodman 02 Nov '15

02 Nov '15

One or more PhD positions in computational neuroscience are available in the Neural Reckoning Group of Dan Goodman at the Department of Electrical and Electronic Engineering, Imperial College London. I am interested in supervising students with a strong mathematical, computational or neuroscience background. Projects could be carried out in several possible areas, including neuroinformatics (i.e simulation and analysis of neural data) or sensory neuroscience (e.g. spiking neural models in the auditory system). For more information about the group, including some suggestions for research topics, see http://neural-reckoning.org/openings.html. In addition to working within the group, studying at Imperial College provides excellent opportunities for interacting with other theoretical and experimental researchers, both at Imperial (recently ranked 2nd in the world in the QS world university rankings) and in the many neuroscience groups in London. Applicants should initially send me a brief CV and cover letter with a description of research interests or a proposed project, and will eventually have to formally apply through the standard Imperial College mechanism (for more information, see http://www3.imperial.ac.uk/electricalengineering/courses/phd) Funding is available for at least one student, and there are several competitive funding schemes at Imperial which would provide funding for additional students. Also, please forward this message on to any of your students or colleagues with students that you think may be interested. Dan Goodman

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Neuroscience Graduate Group at the University of Pennsylvania
by Joshua Gold 08 Oct '15

08 Oct '15

The Neuroscience Graduate Group (NGG) at the University of Pennsylvania is a collaborative and interdisciplinary PhD program that is currently accepting applications for matriculation in the fall of 2015. We are particularly interested in attracting exceptional applicants with backgrounds in Neuroscience, Computer Science, Cognitive Science, Mathematics, Engineering, Physics, and/or Psychology and are interested in the broadly defined field of Computational Neuroscience. We have a robust and growing community of scholars in this field, including: Vijay Balasubramanian, Department of Physics Danielle S Bassett, Department of Bioengineering David H Brainard, Department of Psychology Maja Bucan, Department of Genetics Johannes Burge, Department of Psychology Alice S Chen-Plotkin, Department of Neurology Brian Chow, Department of Bioengineering Yale E Cohen, Department of Otorhinolaryngology Diego Contreras, Department of Neuroscience Christopher M Fang-Yen, Department of Bioengineering Maria Neimark Geffen, Department of Otorhinolaryngology Joshua I Gold, Department of Neuroscience John B Hogenesch, Department of Pharmacology Joseph W Kable, Department of Psychology Michael J Kahana, Department of Psychology Max Kelz, Department of Anesthesiology Brian Litt, Departments of Neurology and Bioengineering Joel D Mainland, Department of Neuroscience Javier F Medina, Department of Psychology Nicole C Rust, Department of Psychology Robert G Smith, Department of Neuroscience Alan A Stocker, Department of Psychology Penn also has strong programs in Statistics, Computer Science, Engineering, and Psychology with faculty actively involved in machine learning, decision making, perception, and computational learning theory. NGG students are encouraged to pursue collaborations and interactions with these groups. The application deadline for the NGG is December 1, 2014. For more details please see our website: http://www.med.upenn.edu/ngg/app_info.shtml ----- Joshua Gold University of Pennsylvania Department of Neuroscience 116 Johnson Pavilion 3610 Hamilton Walk Philadelphia, PA 19104-6074 office phone: 215-746-0028 lab phone: 215-746-0168 e-mail: jigold(a)mail.med.upenn.edu http://www.med.upenn.edu/goldlab

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Gatsby Computational Neuroscience Unit, PhD Programme
by Peter Dayan 24 Sep '15

24 Sep '15

Gatsby Computational Neuroscience Unit, University College London 4 year PhD Programme The Gatsby Unit is a centre for theoretical neuroscience and machine learning, focusing on unsupervised, semi-supervised and reinforcement learning, neural dynamics, population coding, Bayesian and nonparametric statistics, kernel methods, and applications of these to the analysis of perceptual processing, neural data, machine vision and bioinformatics. It provides a unique opportunity for a critical mass of theoreticians to interact closely with each other, and with other world-class research groups in related departments at UCL, including the Sainsbury Wellcome Centre for Neural Circuits and Behaviour, with which we will shortly share a building, and Biosciences, Computer Science, Functional Imaging, Physics, Physiology, Psychology, Neurology, Ophthalmology and Statistics, the cross-faculty Centre for Computational Statistics and Machine Learning, and also with other UK and overseas universities. The Unit has openings for exceptional PhD candidates. Applicants should have a strong analytical background, a keen interest in neuroscience and/or machine learning and a relevant first degree, for example in Computer Science, Engineering, Mathematics, Neuroscience, Physics, Psychology or Statistics. The PhD programme lasts four years, including a first year of intensive instruction in techniques and research in theoretical neuroscience and machine learning. All students are fully funded, regardless of nationality. The Unit also welcomes applications from students with pre-secured funding or who are currently soliciting other scholarship/studentships. We will review applications as soon as they are complete (including a CV, statement of research interests and letters from three referees) until the positions are filled. Early application is thus advised. Full details of our programme, and how to apply, are available at: http://www.gatsby.ucl.ac.uk/teaching/phd For further details of research interests please see http://www.gatsby.ucl.ac.uk/research.html and the individual faculty webpages at http://www.gatsby.ucl.ac.uk/members.html

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PhD studentships in computational neuroscience and machine learning
by Steuber, Volker 28 Aug '15

28 Aug '15

Applications are invited for PhD studentships in the Biocomputation Research Group at the Science and Technology Research Institute at the University of Hertfordshire. PhD projects involve the development of computer simulations of neurons and neuronal networks to study information processing in the brain, and/or the application of machine learning techniques to analyse electrophysiological data. More details about our research and a list of potential projects can be found on our homepage (http://homepages.herts.ac.uk/~comqvs/research.html) Applicants should have good computational and numerical skills and an excellent first degree in computer science, biology, maths, physics, neuroscience, or a related discipline. Previous experience in neuroscience is not required but would be an advantage. Successful candidates are eligible for a research studentship award from the University (approximately GBP 13,800 per annum bursary plus the payment of the standard UK student fees). Applicants from outside the UK or EU are eligible, but will have to pay half of the overseas fees out of their bursary. Research in Computer Science at the University of Hertfordshire has been recognized as excellent by the latest Research Assessment Exercise, with 55% of the research submitted being rated as world leading or internationally excellent. The Science and Technology Research Institute provides a very stimulating environment, offering a large number of specialized and interdisciplinary seminars as well as general training opportunities. The University of Hertfordshire is situated in Hatfield, in the green belt just north of London. Please contact Dr Volker Steuber (v.steuber @ herts.ac.uk) for informal enquiries. Application forms can be obtained from Mrs Lorraine Nicholls, Research Student Administrator, STRI, University of Hertfordshire, College Lane, Hatfield, Herts, AL10 9AB, Tel: 01707 286083, l.nicholls @ herts.ac.uk. The short-listing process will begin on 9 June 2014.

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postdoc positions - Gatsby Computational Neuroscience Unit
by Peter Latham 21 Apr '15

21 Apr '15

The Gatsby Computational Neuroscience Unit invites applications for one or more postdoctoral training fellowships in theoretical neuroscience, including population coding, learning, neural neural dynamics, the interpretation of neural data, perceptual processing, and neuromodulation. The position is available for an initial period of two years, and may be renewed to a maximum of three years. The closing date for applications is 15 March, 2015. Interviews will be held in May 2015. To find out more about the job, and to apply, see http://www.gatsby.ucl.ac.uk/vacancies/TN%20Postdoc2015.html For further details of our research, see http://www.gatsby.ucl.ac.uk/research.html

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New book "Understanding Vision: theory, models, and data"
by Zhaoping Li 13 Feb '15

13 Feb '15

This book "Understanding Vision: theory, models, and data" is published by Oxford University Press in May 2014 and, by now, it is available from various online sites and shops worldwide. For more information, go to http://www0.cs.ucl.ac.uk/staff/zhaoping.li/VisionBook.html The book's Table of Contents can be viewed at http://www0.cs.ucl.ac.uk/staff/zhaoping.li/prints/TableOfContents.pdf Teaching and learning support for the book (e.g., ppt files for the figures in the book) is also available and will be updated at http://www0.cs.ucl.ac.uk/staff/zhaoping.li/VisionBook.html . Readership: Computational neuroscientists, visual psychologists/cognitive scientists, Visual neuroscientists/physiologists/anatomists, Researchers in machine vision or computer vision or robot vision The book is written in such a way that vision scientists, unfamiliar with mathematical details, should be able to conceptually follow the theoretical principles and their relationship with physiological, anatomical, and psychological observations, without going through the more mathematical pages. For those with a physical science background, especially those from machine vision, this book serves as an analytical introduction to biological vision. It can be used as a textbook or a reference book in a vision course, or a computational neuroscience course for graduate students or advanced undergraduate students. It is also suitable for self-learning by motivated readers. In addition, for those with a focused interest in just one of the topics in the book, it is feasible to read just the chapter on this topic without having read or fully comprehended the other chapters. In particular, Chapter 2 presents a brief overview of experimental observations on biological vision; Chapter 3 is on encoding of visual inputs, Chapter 5 is on visual attentional selection driven by sensory inputs, and Chapter 6 is on visual perception or decoding. Please let me know if you need more information. best wishes, Li Zhaoping

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Call for Applications: School on Neurotechnologies 2015 (March 23-27, 2015) at Padova, Italy.
by Mufti Mahmud 31 Jan '15

31 Jan '15

Dear All, Sorry for the cross posting of this message. I am glad to communicate that the NeuroChip Laboratory of University of Padova, Padova, Italy is organizing a School on Neurotechniques with special emphasis on "Tools for Investigating the Function of Neural Circuits". The school will be held from March 23 – 27, 2015 and the deadline for application is February 20, 2015. The following topics will be covered in the school: 1. Multi-electrode and multi-transistor arrays 2. Implantable brain probes for acute and chronic recording 3. Calcium imaging 4. Voltage sensitive dye imaging 5. Optogenetics 6. Transcranic magnetic stimulation and EEG 7. Mixed electrophysiology, genetics and behavior approaches 8. Information theory and the analysis of neuronal population signals 9. Closed-loop electrophysiology and hybrid neuromorphic-neural systems Thank you for your attention. Best regards, Mufti Mahmud Call for participation ------------------------- School on Neurotechniques 2015: The toolbox for investigating the function of neural circuits 23-27 March 2015 NeuroChip Lab, University of Padova, Italy Website: http://www.vassanellilab.eu/school-neurotechniques/ OBJECTIVE Investigating information processing and identifying operational rules of brain neural circuits relies on the capability to selectively record and stimulate multiple neurons within a network. The toolbox of available techniques conceived to meet this need is rapidly expanding. The CSN School on Neurotechniques 2015 will offer an overview on advanced electrical- and light-based recording methods of neuronal excitability, focusing on those that are most relevant for the investigation of neural networks ‘in vitro’ and ‘in vivo’ and for application in neuroprosthetics. Techniques derived from information theory for the analysis of neuronal population signals will be presented and practical demonstrations of experimental recording sessions provided. The school targets doctoral students, post-doctoral researchers, scientists working in the related fields. Since the school's topics are interdisciplinary covering neurobiology, neuronal biophysics, microscopy, and electronics, preliminary knowledge in these fields is highly recommended. SPEAKERS Luca Berdondini, Italian Institute of Technology, Italy Paolo Del Giudice, National Institute of Health, Italy Stefano Ferraina, University of Rome ‘La Sapienza’, Italy Marta Giacomello, University of Padova, Italy Michele Giugliano, University of Antwerp, Belgium Bernd Kuhn, Okinawa Institute of Science & Technology, Japan Gabriele Losi, CNR Institute of Neuroscience, Padova, Italy Sergio Martinoia, University of Genova, Italy Marcello Massimini University of Milan , Italy Silvestro Micera, EPFL, Switzerland & SSSUP, Italy Ofer Yizhar, Weizmann Institute of Science, Israel Stefano Panzeri, Italian Institute of Technology, Italy Patrick Ruther, University of Freiburg, Germany Roland Thewes, University of Berlin, Germany Paul Verschure, Pompeu Fabra University, Spain Guenther Zeck, NMI at the University of Tuebingen, Germany Ralf Zeitler, MPI for Intelligent Systems, Germany REGISTRATION To apply, please register at ( http://www.vassanellilab.eu/school-neurotechniques/registration/) on or before February 20, 2015. If you have any further questions, please contact silviamaria.lattanzio(a)unipd.it or stefano.vassanelli(a)unipd.it The registration is FREE, however, the number of places are limited. The registration is sponsored by the European Commission, Project CSNII csnetwork.eu (GA No 601167, FP7, FET Proactive, Neuro-Bio-Inspired Systems). Travel and accommodation costs are not funded. LOCATION The school will be hosted by the NeuroChip Laboratory, Department of Biomedical Sciences, University of Padova, Via f. Marzolo 3, 35131 - Padova, Italy. The location is very close the city centre and is easily reachable from the railway or bus station of Padova. WHEN March 23-27, 2015. Target audience (N = ~25 active full-time): PhD students, postdoctoral researchers, scientists, members of associated EC CSNII consortia.

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Workshop announcement at the EITN March 2-4 2015
by EITN 30 Jan '15

30 Jan '15

More information and registration on the following website http://eitnconf-020315.sciencesconf.org/ *Due to a limited number of seats, the registration is free however mandatoty **March 2nd-4th 2015, EITN Paris 1^st community workshop HBP network simulator* *“Are we building the right thing? – Requirements from theory for simulation environments and neuromorphic computing”* http://www.eitn.org Organized by Andrew Davison, Jeff Muller, Jochen Eppler, David Lester, Abigail Morrison and Markus Diesmann in collaboration with the EITN.** ***Abstract* The HBP creates novel ICT infrastructure for the neuroscience community. Simulation engines in software and hardware for different levels of description are accessible through a unified collaboration portal (UP) providing version control and provenance tracking. The simulation engine for networks of abstract spiking neuron models called the network simulator provided by the software NEST particularly targets theoretical neuroscience and neurorobotics. This workshop presents the capabilities of the network simulator and the corresponding PyNN expressions as available at the end of the ramp-up phase of the HBP in March 2016. Neuromorphic hardware provided by the NM-PM1 (Heidelberg) and SpiNNaker (Manchester) systems enable the translation of a restricted set of software models to a platform with accelerated speed and reduced power consumption for high-throughput studies and interaction with the real world. With this background, the main part of the workshop is reserved for a discussion of the scientific challenges and plans of theoretical neuroscience to derive future requirements on the simulation engine. This will help developers to optimize the roadmap of the second phase of the HBP with the aim to maximize usefulness, uptake, and impact.

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