September 2014 - Comp-neuro - lists.cnsorg.org

Postdoc: Experimental Retinal Prosthetics lab, Tuebingen, Germany
by Daniel Rathbun Sept. 30, 2014

Sept. 30, 2014

Postdoc Advertisement: For visual prosthetics research through electrophysiological experiments in the retina. *Duration*: 22 months, starting around January 1 2015, with potential to continue through the end of the project in 2019. *Location*: scenic Tübingen, Germany *Supervisors*: Dr. Daniel L. Rathbun and Prof. Eberhart Zrenner – Experimental Retinal Prosthetics Group – Centre for Integrative Neuroscience, Institute for Ophthalmic Research, University Eye Hospital *Project Description*: *SysRetPro* – Systems Neuroscience in Service of the Next-Generation Retinal Prosthesis. Our primary goal is to connect prosthesis-mediated visual responses in the blind mouse retina and normal visual responses in the healthy mouse retina through a unifying theoretical framework that encompasses both existing computational models and empirical data. The ultimate goal of this research program is to create innovations for human implants. The postdoc will be focused on data collection for the project. *Skills*: Strong background in experimental extracellular neurophysiology using either MEAs, tetrodes, or single electrodes - patch clamp a bonus. Extensive knowledge in vertebrate visual processing at the cellular, network, and systems level. Programming experience – preferably MATLAB Fluency in English, German fluency appreciated. An interest in computational modeling is preferred but not necessary. *Duties*: Experimental design within the framework of the project. Oversee and execute a program of experiments. Process and analyze MEA data corresponding to visual and electrical responses. Participate in the computational modeling of experimental data. Coordinate your activities with the PIs and bachelors, masters, and doctoral students. Active participation in development and writing of manuscripts from the lab. Work with Dr. Rathbun & Prof. Zrenner to secure funding to extend your position for the second phase of the 60-month project. *Contact*: daniel.rathbun(a)uni-tuebingen.de

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Neuroinformatics, Computational Neuroscience PhD and MSc at Edinburgh
by Matthias Hennig Sept. 28, 2014

Sept. 28, 2014

PhD/MSc IN NEUROINFORMATICS, COMPUTATIONAL NEUROSCIENCE, UNIVERSITY OF EDINBURGH. We invite applications for the PhD and MSc programme in Neuroinformatics and Computational Neuroscience at the University of Edinburgh. The MSc programme is a one year course introducing key concepts and applications through courses and a research project. It serves as preparation for a PhD or work in industry for students from quantitative disciplines with little or no previous exposure to neuroscience. A wide range of courses are available, including computational neuroscience, bioinformatics, machine learning, robotics and computer vision. This programme is self-funded. The PhD is a 3 year funded programme with a strongly interdisciplinary character and is ideal for students who want to apply their computational and analytical skills to problems in neuroscience and related fields. Often PhD projects are done in collaboration with one of the many affiliated departments and institutes, which includes experimental neuroscience groups in Edinburgh and beyond. The programme it fully funded and provides a stipend and fees. The PhD programme includes the following themes, where Edinburgh has a strong research community: - computational and mathematical studies of neural information processing - spiking computation and neurorobotics - advanced experimental data analysis - neural simulation and modelling PhD applications can be prepared in conjunction with one of the PhD supervisors in these research areas: - Douglas Armstrong - James Bednar - Matthias Hennig - Michael Herrmann - Peggy Series - Mark van Rossum - Ian Simpson - Barbara Webb For more information on faculty, visit: http://www.anc.ed.ac.uk/neuroscience Examples of ongoing projects are listed here: http://www.anc.ed.ac.uk/dtc/index.php?option=com_projects&completed=0 Students with a strong background in either computer science, mathematics, physics or engineering are particularly welcome to apply. Motivated students with other backgrounds will also be considered. This programme cannot normally consider non-EU applicants unless own funding such as an external studentship is available. Edinburgh has been voted as 'best place to live in Britain', and has many exciting cultural and student activities. Recruitment is a rolling process that ends on 13 March 2015, but for full consideration apply by 12 December 2014. To apply, visit: http://www.ed.ac.uk/studying/postgraduate/degrees?r=site/view&id=489&cw_xml= -- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.

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Postdoc: color neurophysiology, modeling and visual prosthesis, SUNY, New York City
by Youping Xiao Sept. 27, 2014

Sept. 27, 2014

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Want to build a fly brain?
by Aurel A. Lazar Sept. 27, 2014

Sept. 27, 2014

Join us in an open-source collaborative effort aimed at (i) building in silico fruit fly brain circuits, and (ii) in vivo validation of these circuits. Neurokernel: An open source platform for emulating fruit fly brains on GPUs http://neurokernel.github.io Neurokernel Requests for Comments (RFCs): http://neurokernel.github.io/docs.html Aurel A. Lazar http://www.bionet.ee.columbia.edu

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December10-13th : Workshop and Course on "Neural Information Dynamics, Causality and Computation close to Criticality"
by Michael Wibral Sept. 26, 2014

Sept. 26, 2014

Dear colleagues, please find below an invitation to a joint workshop by LOEWE-NeFF and the Frankfurt Institute for Advanced Studies (FIAS). Best Regards, Michael Wibral Matthias Kaschube ----------------------- LOEWE-NeFF and the Frankfurt Institute for Advanced Studies (FIAS) jointly invite you to a “Workshop on Neural Information Dynamics, Causality and Computation near Criticality” December 12-13th, 2014 The workshop is preceded by a “Software course on Neural Information Dynamics with TRENTOOL, the Java Information Dynamics Toolkit and MuTE” December 10-11th, 2014 Venue: Workshop and student course will be held at the Frankfurt Institute for Advanced Studies (FIAS, www.fias.uni-frankfurt.de) Ruth-Moufang-Straße 1, 60438 Frankfurt, Germany The workshop addresses the analysis of neural computation in large neural systems and covers three tightly related topics in the field of modern analysis of neural data: Causality The analysis of causal interactions yields important insights into the biophysical substrate of neural dynamics that enable emergent computation. It is one of the goals of the workshop to discuss the link between causal analysis and the analyses of information processing proper, in order to clarify the dividing line and the mutual benefit of these two types of analyses. Neural information dynamics Information theoretic quantities separate and measure key elements of distributed computation in neural systems, such as the storage, transfer, and modification of information. These concepts can help to better understand the computational algorithms implemented by the dynamics of a neural system, providing the link between these algorithms and their biophysical implementation. Large scale organisation and criticality Neural systems orchestrate the activity of a large number of interacting neurons to achieve their computational capabilities. Recent advances in recording technology make it possible to reveal the activity patterns of hundreds of neurons distributed across the brain. This offers the unique opportunity to identify the large-scale organising principles of neural activity, such as operation near a critical point, that support computation in the system. Confirmed speakers: Adam Barrett Demian Battaglia Sakyasingha Dasgupta Luca Faes Esther Florin Moritz Grosse-Wentrup Andreea Lazar Anna Levina Daniele Marinazzo Oliver Obst Gordon Pipa Alberto Porta Viola Priesemann Karin Schiecke Raul Vicente The supporting software course addresses young scientists who intend to apply information theoretic measures for neuroscience hands on, and that would like to contribute code to one of the open source toolboxes on the topic. Some minimal experience with MATLAB or GNU-Octave is necessary for participation. Some prior knowledge in information theory is a plus. Applications for the student course should include a brief statement of motivation. Student course faculty: Alessandro Montalto (MuTE) Michael Wibral (TRENTOOL, Java Information Dynamics Toolkit) Patricia Wollstadt (TRENTOOL) ---------------------------------------------------------- Please apply/register by email before October 24th to wibral(a)em.uni-frankfurt.de as places for course and workshop are limited. Registration fees Student course: 50,00 EUR Workshop: 75,00 EUR Course+Workshop: 100,00 EUR Upon successful registration please wire the registration fees to: Account holder: Universitätsklinikum Account: 37 99 99, BLZ: 50050201 IBAN: DE 32 500 502 01 0000 37 9999 SWIFT-Code: HELADEF 1822 Reference: 21000521

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ICCM 2015
by ICCM 2015 Sept. 26, 2014

Sept. 26, 2014

############################# Call for papers ICCM 2015 April 9 - 11, 2015 Tutorials: April 8, 2015 Groningen, The Netherlands ############################# We would like to invite you to the 13th International Conference on Cognitive Modeling: the premier conference for research on computational models and computation-based theories of human cognition. ICCM is a forum for presenting and discussing the complete spectrum of cognitive modeling approaches, including connectionism, symbolic modeling, dynamical systems, Bayesian modeling, and cognitive architectures. Research topics can range from low-level perception to high-level reasoning. In 2015 we specifically welcome contributions that use computational models to better understand neuroscientific data. We are pleased to announce three world-class invited speakers: Pieter Roelfsema (Netherlands Institute for Neuroscience), Mark Steyvers (University of California, Irvine), and John Anderson (Carnegie Mellon University). All types of submissions (full papers, poster abstracts, symposia, and pre-conference tutorials) are due on December 8, 2014, 11.59pm CEST. More information can be found on our website: http://www.iccm2015.org We hope to see you in Groningen! Niels Taatgen Marieke van Vugt Jelmer Borst Katja Mehlhorn #############################

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Invitation - 4th International Conference " Aspects of Neuroscience" Warsaw, Poland, November 14th to 16th 2014
by Daniel Borek Sept. 25, 2014

Sept. 25, 2014

Dear Friend, On behalf of the Board of the Student Neurobiology Society operating at the Faculty of Biology of the University of Warsaw (Poland) we would like to invite you to *the 4**th** International Conference " Aspects of Neuroscience"* that will be held in Warsaw, Poland, *from November 14**th** to 16**th** 2014* at the Faculty of Biology of the University of Warsaw. As in the following years, this time the Conference also consists of poster and report symposia*. *November symposia will be devoted to*: Neurobiology, Cognitive Neuroscience, Clinical Neuroscience, Neuroinformatics and Neuroscience Borderlines*. Each of the thematic symposium will be preceded by a lecture delivered by one of the guests, a specialist of a given domain. The IV edition of Aspects of Neuroscience Conference will be opened by *prof. Krzysztof Palczewski *from Department of Pharmacology (Case Western Reserve University, Ohio, USA) with the lecture entitled "Chemistry of vision and inherited retinal disease". The closing lecture will be delivered by *prof. Wiesław Nowiński* from the Agency for Science, Technology and Research <http://pl.wikipedia.org/wiki/Agency_for_Science,_Technology_and_Research> who is a *creator of 3D human brain atlase.* Among our special guests are *dr Bruce Graham* from University of Stirling in Scotland (Neuroinformatics session), *prof. Leszek Kaczmarek* from Nencki Institute of Experimental Biology, Polish Academy of Sciences (Neurobiology session), *dr Valeria Gazzolla* from the Netherlands Institute for Neuroscience in Amsterdam, assistant professor at the University of Groningen in Netherlands (Cognitive neuroscience session) and *prof. Semir Zeki – *the Head of the Wellcome Laboratory of Neurobiology (Vislab) at the University of College London (Borderlines of neuroscience session). The student lectures will take place simultaneously in two rooms, in *basic* version *and* in *extended version*. Language of conference is *English*. The event is intended for students, doctoral students and research workers related to neuroscience, but also for people who do not have any experience in this field of knowledge. *Registration for the conference is already open! * http://www.neuronauka.org/eng/?page_id=69 More information about conference and the whole Project: www.neuronauka.org/eng. Find us on facebook: https://www.facebook.com/AspectsOfNeuroscience?fref=ts Yours sincerely, Student Neurobiology Society at the University of Warsaw Organizing Committee of the International Conference of Students and Young Scientists "The Aspects of Neuroscience"

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POSTDOCTORAL POSITIONS IN COMPUTATIONAL NEUROSCIENCE AT BROWN UNIVERSITY
by Wilson Truccolo Sept. 24, 2014

Sept. 24, 2014

POSTDOCTORAL POSITIONS IN COMPUTATIONAL NEUROSCIENCE AT BROWN UNIVERSITY: Applications for NIH-funded post-doctoral positions are invited for the Laboratory of Dr. Wilson Truccolo in the Department of Neuroscience at Brown University, Providence, RI, USA. The positions are for the development of data-driven stochastic and biophysical models of multiscale neural dynamics in human epilepsy. Data consist of simultaneous intracortical microelectrode array recordings of ensembles of single neurons and local field potentials, as well as ECoGs, during seizure and non-seizure states in individuals with intractable epilepsy. The project involves a collaboration between the labs of Dr. Truccolo and Dr. Sydney Cash (Massachusetts General Hospital, Harvard Medical School, Boston). The ideal candidate will have a strong background in computational/theoretical neuroscience and modeling of stochastic neural dynamics. Related recent publications can be found on the Truccolo lab website ( http://www.truccololab.com/ <http://dl.dropbox.com/u/983891/Truccolo_home.htm>). Inquiries should be addressed to Dr. Truccolo (wilson_truccolo(a)brown.edu) Applications including a CV, statement of research interests, and the names and full contact details of three referees should be sent to wilson_truccolo(a)brown.edu. -- Wilson Truccolo, Ph.D. Pablo J. Salame '88 Goldman Sachs Assistant Professor of Computational Neuroscience Institute for Brain Science & Department of Neuroscience, Brown University Lab website: http://www.truccololab.com/

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PhD position in systems neuroscience at the Queensland Brain Institute (Australia).
by Allen Cheung Sept. 23, 2014

Sept. 23, 2014

Dear Colleagues, We are seeking a suitable PhD candidate to investigate the computational underpinnings of spatial representations in the rodent hippocampus. The candidate will use in vivo electrophysiology and new wireless recording technologies to record from individual neurons in behaving rodents. The work will be carried out in state-of-the-art facilities at the Queensland Brain Institute in Brisbane, Australia. Further information about the PhD project and the Queensland Brain Institute can be found at: http://jobs.uq.edu.au/caw/en/job/496483/phd-position-in-systems-neuroscienc… Allen ________________________________________________ Dr Allen Cheung Group Leader | Computational Neuroscience | Spatial Navigation Queensland Brain Institute | The University of Queensland Email: a.cheung(a)uq.edu.au ________________________________

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Recruitment: Sainsbury Wellcome Centre for Neural Circuits and Behaviour
by Peter Dayan Sept. 23, 2014

Sept. 23, 2014

Sainsbury Wellcome Centre for Neural Circuits and Behaviour Under the Directorship of Professor John O’Keefe, the Sainsbury Wellcome Centre for Neural Circuits and Behaviour at UCL will commence operations in early 2015 bringing together world-leading scientists to investigate how brain circuits process information to create neural representations and guide behaviour. The Centre has been created through substantial investment from the Gatsby Charitable Foundation and the Wellcome Trust, and is being structured to foster a culture of innovation, collaboration, enquiry and excellence. The Centre will be accommodated in a new, purpose-designed, seven-storey building located in Central London and offering an outstanding and unparalleled research environment through its provision of state-of-the-art research laboratories with integral biological services capability, cutting-edge scientific equipment, technologically-advanced prototyping and fabrication laboratories, significant in-house high-performance computing facilities and extensive data storage systems to support both experimental analysis and theoretical modelling. Neuroscientists working in the Centre will use the latest advanced molecular and cellular biology, imaging, electrophysiology and behavioural techniques. The Gatsby Computational Neuroscience Unit will be located at the heart of the Centre, facilitating broad and deep collaborations in data analysis and computational modelling. The full complement of scientists in the Centre is expected to reach 150 together with around 50 dedicated support staff. Scientists joining the Centre will become part of UCL Neuroscience which brings together over 450 principal investigators located primarily within the UCL School of Life and Medical Sciences and offers extensive opportunities for interaction and collaboration. Neuroscience is a strategic priority for UCL as it positions itself to become the world’s leading neuroscience institution. The Centre will offer additional opportunities for collaboration, networking and intellectual stimulation through its visitor programme, regular seminar series and the hosting of world-class scientific conferences and workshops. Formal teaching commitments will be minimal allowing scientists to focus on their research. The Centre is recruiting high-achieving, highly-motivated collaborative scientists with backgrounds in neuroscience as well as related physical and biological sciences, at all career levels. We invite applications from outstanding, innovative scientists who can evidence the highest levels of academic excellence through substantial peer-reviewed publications and significant scientific achievement. Given the technologically- advanced research proposed for the Centre, we are particularly interested in scientists wishing to extend the boundaries of technological development in areas such as high-density electrophysiological probes, telemetry, optical recording, molecular and genetic tools, new anatomical mapping techniques, and the use of virtual reality and other novel behavioural approaches such as video image analysis. Recruitment will take place on a continuing ad hoc basis and at dedicated residential recruitment workshops. The first recruitment workshop has been scheduled for 3-4 November 2014 with a focus on Fellowship applications. Senior scientist interviews will be scheduled from November onwards. Competitive salaries, tailored research space and generous relocation and recruitment packages, including research support, will be offered. For further details about vacancies and how to apply online, please visit: http://www.ucl.ac.uk/swc/opportunities

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