- Comp-neuro - lists.cnsorg.org

CAJAL Course on Quantitative Approaches to Behavior and Virtual Reality 2024
by Daniel McNamee 24 Jan '24

24 Jan '24

CAJAL COURSE ON QUANTITATIVE APPROACHES TO BEHAVIOR AND VIRTUAL REALITY 2 - 21 June 2024, Champalimaud Centre for the Unknown, Lisbon, Portugal https://cajal-training.org/on-site/quantitative-approaches-to-behaviour-and… Applications deadline: 19 February 2024 DIRECTORS • Benjamin de Bivort (Harvard University, USA) • Ann Kennedy (Northwestern University, USA) * Giorgio Gilestro (Imperial College London, UK) • Daniel McNamee (Champalimaud Centre for the Unknown, Portugal) Quantitative studies of behaviour are fundamental in our effort to understand brain function and malfunction. Recently, the techniques for studying behaviour, along with those for monitoring and manipulating neural activity, have progressed rapidly. Therefore, we are organizing a summer course to provide promising young scientists with a comprehensive introduction to state-of-the-art techniques in quantitative behavioural methods. This course’s content is complementary to other summer courses that focus on measuring and manipulation neurophysiological processes. Our focus is on methodologies to acquire rich data representations of behavior, dissect them statistically, model their dynamics, and integrate behavioral measurements with other kinds of neurobiological data. To this end, students will 1) fabricate devices for recording the behavior of experimental organisms (including flies, fish, and humans), 2) learn, under the guidance of the scientists developing these methods, the modern tools to analyze behavioral data from these organisms, and 3) in a week-long independent project develop and conduct a behavioral study of their own design, with the support and guidance of the course instructors and teaching assistants. The course is designed for graduate students and postdoctoral fellows from a variety of disciplines, including neuroscience, biology, ethology, computer science, and psychology. Students are expected to have a keen interest and basic background in neurobiology and behavior, as well as some programming experience. A maximum of 20 students will be accepted. Students of any nationality can apply. We specifically encourage applications from researchers who work in the developing world. Stipends are available. Confirmed faculty: Ahmed Al-Hady (Max Planck Institute, Konstanz, Germany) Kristin Branson (Janelia, USA) Andre Brown (Imperial College, UK) Bing Brunton (U Washington, USA) Iain Couzin (Max Planck Institute, Konstanz, Germany) Serena Ding (Max Planck Institute, Konstanz, Germany) Gonzalo de Polavieja (Champalimaud, Portugal) Kim Hoke (Colorado State University, USA) Karla Kaun (Brown University, USA) Kate Laskowski (UC Davis, USA) Zach Mainen (Champalimaud, Portugal) Talmo Pereira (Salk Institute, USA) Hugo Spiers (UCL, UK) Nachum Ulanovsky (Weizmann Institute, Israel) more to be confirmed! Daniel McNamee (co-director, Champalimaud Research)

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Postdoc in Barcelona
by Quian Quiroga, Rodrigo (Prof.) 24 Jan '24

24 Jan '24

POSTDOCTORAL POSITION TO STUDY SINGLE CELL RECORDINGS AND MEMORY FUNCTIONING IN THE HUMAN BRAIN We are looking for a postdoc to study single cell recordings in humans, performed in epileptic patients for curative surgery. The position will be in the recently established group of Prof. Quian Quiroga at the Hospital del Mar Research Institute, in Barcelona (https://www.imim.es<https://www.imim.es/>). The project will investigate concept cells (a.k.a. Jennifer Aniston neurons) – neurons in the hippocampus and surrounding areas that selectively fire to specific concepts, like different pictures and the written or spoken name of a particular person (e.g. Quian Quiroga et al, Nature 2005; Quian Quiroga, Cell 2019), which are involved in declarative memory functions. For more details see: https://web.archive.org/web/20220108024112/https://www2.le.ac.uk/centres/cs…<https://web.archive.org/web/20220108024112/https:/www2.le.ac.uk/centres/csn…> The successful candidate will contribute to performing recordings with patients and the analysis / modelling of the data to investigate the role of these neurons in memory. The candidate should have very good quantitative skills (data processing and programing, e.g. in Matlab) and a strong background or interest in neuroscience. To apply send an email to Prof. Rodrigo Quian Quiroga (rquian(a)imim.es) including a CV, a letter of motivation and the name of two contacts for references. Deadline for application: Review of applications will begin on the 12th of February 2024 and will continue until the position is filled. Best, Rodrigo Quian Quiroga ICREA Research Professor Hospital del Mar Research Institute (IMIM) PRBB Building. Barcelona, Spain

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CSHL 2024 summer course on "Computational Neuroscience: Vision"
by Jonathan Pillow 24 Jan '24

24 Jan '24

Hi All, Please consider applying to the CSHL "Computational Neuroscience: Vision" summer course. (See below for details). Applications are due March 15. Thank you! -Jonathan Pillow <https://urldefense.com/v3/__https://r20.rs6.net/tn.jsp?f=001WKqGSEgHdUGUppV…> <https://urldefense.com/v3/__https://r20.rs6.net/tn.jsp?f=001WKqGSEgHdUGUppV…> Computational Neuroscience: Vision <https://urldefense.com/v3/__https://r20.rs6.net/tn.jsp?f=001WKqGSEgHdUGUppV…> July 9 - 23, 2024 Applications Due: March 15, 2024 Instructors Emily Cooper, University of California Berkeley Jonathan Pillow, Princeton University John Serences, University of California, San Diego Hands-on Experience with - MATLAB- and Python-based computer tutorials and projects - Visual information processing from the retina to higher cortical areas - Spatial pattern analysis - Motion analysis - Neuronal coding and decoding - Attention - Decision-making 2024 Lecturers Emma Alexander, Northwestern University Mariam Aly, Columbia University Kathryn Bonnen, Indiana University EJ Chichilnisky, Stanford University Marlene Cohen, University of Chicago Rachel Denison, Boston University Lea Duncker, Stanford University Ione Fine, University of Washington Lindsey Glickfeld, Duke University Jennifer Groh, Duke University Kohitij Kar, York University Taraz Lee, University of Michigan J. Anthony Movshon, New York University Stephanie Palmer, University of Chicago Ruth Rosenholtz, M.I.T. Madineh Sedigh-Sarvestani, Cornell University Eero Simoncelli, New York University/Flatiron Institute Stefan Treue, Universität Göttingen - German Primate Center, Germany Jacob Yates, UC Berkeley For further information and to register please visit the Computational Neuroscience: Vision course website. <https://urldefense.com/v3/__https://r20.rs6.net/tn.jsp?f=001WKqGSEgHdUGUppV…>

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Announcing Okinawa/OIST Computational Neuroscience Course 2024 (OCNC 2024)
by Erik De Schutter 24 Jan '24

24 Jan '24

OKINAWA/OIST COMPUTATIONAL NEUROSCIENCE COURSE 2024 Methods, Neurons, Networks and Behaviors June 17 to July 4, 2024 Okinawa Institute of Science and Technology Graduate University, Japan https://groups.oist.jp/ocnc The aim of the Okinawa/OIST Computational Neuroscience Course is to provide opportunities for young researchers with theoretical backgrounds to learn the latest advances in neuroscience, and for those with experimental backgrounds to have hands-on experience in computational modeling. We invite graduate students and postgraduate researchers to participate in the course, held from June 17th through July 4th, 2024 at an oceanfront seminar house of the Okinawa Institute of Science and Technology Graduate University. Applications are through the course web page (https://groups.oist.jp/ocnc) only; January 1 - January 31, 2024. Applicants will receive confirmation of acceptance end of March. Like in preceding years, the 19th OCNC will be a comprehensive three-week course covering single neurons, networks, and behaviors with ample time for student projects. The first week will focus exclusively on methods with hands-on tutorials during the afternoons, while the second and third weeks will have lectures by international and local experts. The course has a strong hands-on component based on student proposed modeling or data analysis projects, which are further refined with the help of a dedicated tutor. Applicants are required to propose their project at the time of application. There is no tuition fee. The sponsor will provide lodging and meals during the course. We hope that this course will be a good opportunity for theoretical and experimental neuroscientists to meet each other and to explore the attractive nature and culture of Okinawa, the southernmost island prefecture of Japan. Lecturers: Erik De Schutter (OIST) Kenji Doya (OIST) Tomoki Fukai (OIST) Izumi Fukunaga (OIST) N. Alex Cayco Gajic (École Normale Supérieure, Paris, France) Yukiko Goda (OIST) Arvind Kumar (KTH, Stockholm, Sweden) Bernd Kuhn (OIST) Matthew Larkum (Humboldt University, Berlin, Germany) Hakwan Lau (RIKEN CBS, Tokyo, Japan) Sukbin Lim (NYU Shangai, China) Gerald Pao (OIST) Thomas Parr (Oxford University, UK) Sam Reiter (OIST) Kazumasa Tanaka (OIST)

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Modellers Workshop for the Brain Dynamics Toolbox (Final Call)
by Stewart Heitmann 23 Jan '24

23 Jan '24

Final call for the Modellers Workshop for the Brain Dynamics Toolbox. This is an online course is for researchers who wish to build custom dynamical models using the Brain Dynamics Toolbox software. The course focuses on practical programming techniques for the major classes of differential equations (ordinary, partial, delay, stochastic) in computational neuroscience. Example code is provided in all cases. Upon completion, students will be able to turn differential equations into working simulations. Study time is 8 hours. Course Website https://bdtoolbox.teachable.com/p/modellers-workshop Toolbox Website https://bdtoolbox.org Important Dates Enrolments close 31st Jan 2024. Disclaimer The information contained in this communication from the sender is confidential. It is intended solely for use by the recipient and others authorized to receive it. If you are not the recipient, you are hereby notified that any disclosure, copying, distribution or taking action in relation of the contents of this information is strictly prohibited and may be unlawful. This email has been scanned for viruses and malware, and may have been automatically archived by Mimecast Ltd, an innovator in Software as a Service (SaaS) for business. Providing a safer and more useful place for your human generated data. Specializing in; Security, archiving and compliance. To find out more visit the Mimecast website.

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Junior Scientists Workshop on Recent Advances in Theoretical Neuroscience, 3-7 June 2024, Trieste (Italy)
by Francesca Mastrogiuseppe 23 Jan '24

23 Jan '24

We are delighted to announce the upcoming "Workshop on Recent Advances in Theoretical Neuroscience" taking place from June 3rd to 7th, 2024, at ICTP in Trieste, Italy. The workshop is addressed to early- and mid-career researchers, and will explore the topics of dynamics, plasticity, and computation in neural circuits. *Program overview* The program is structured around a series of in-depth morning presentations delivered by invited speakers, with an emphasis on both mathematical tools and biological implications. In the afternoons, participants will share their own research through contributed talks and poster presentations. The primary objective of this program is to foster a collaborative and prolific exchange of ideas among emerging scientists in the field of Theoretical Neuroscience. *Invited speakers* - Blake Bordelon, Harvard University, USA - Alex Cayco Gajic, Ecole Normale Superieure, France - Lea Duncker, Stanford University, USA - Rodrigo Echeveste, Universidad Nacional del Litoral, Argentina - Sukbin Lim, New York University Shanghai, China - Laureline Logiaco, MIT, USA - Marcelo Mattar, New York University, USA - Ulises Pereira, Allen Institute, USA - Alessandro Sanzeni, Bocconi University, Italy - Marine Schimel, Cambridge University, UK - James Whittington, Stanford University, USA *Venue* The workshop will be held at the ICTP Adriatico Guesthouse, a conference facility nestled beside the charming Grignano harbor, just a few minutes' walk from the iconic Miramare Castle. *Registration* There is no registration fee. Additionally, a limited number of grants are available to **fully support** the attendance of selected participants, with priority given to participants joining from the **developing countries**. ICTP can also assist with visa applications. Please note the early deadline for financial/visa support (see below). *Abstract submission* All participants are encouraged to submit an abstract summarizing their ongoing research, eligible for consideration for a poster presentation or a contributed talk. Applications can be submitted via the event website: https://indico.ictp.it/event/10481/ Application deadlines are: - February 23rd, 2024 for applicants requesting financial and/or visa support - March 15th, 2024 for all other applicants Please feel free to reach out with questions or requests. We look forward to your participation for an exciting week together! Best regards, The organizers: Agostina Palmigiano, Francesca Mastrogiuseppe, Alessandro Ingrosso, Sebastian Goldt

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EMBO Practical Course - Barcelona summer school for Advanced Modelling of Behavior (BAMB!), July 16-25, 2024
by Alexandre Hyafil 23 Jan '24

23 Jan '24

The Barcelona summer school for Advanced Modelling of Behavior (BAMB! <http://www.bambschool.org>) teaches advanced techniques in model-based analysis of behavior (humans and other species) to cognitive and computational neuroscientists at PhD and early career levels. This will be achieved through structured lectures, talks, hands-on tutorials and group projects aimed at making knowledge obtained directly applicable to the participants' own research. We want the trainees to acquire both the conceptual basis and the technical skills that will enable them to pursue a full modelling approach on their own when they come back to their lab. The course is intended for PhD students and postdocs in cognitive, systems, and computational neuroscience with a solid background in computational/quantitative analysis to benefit maximally from the advanced training offered by the course. Proficiency in either Python or Matlab is also required. We seek a nice blend of experimentalists (cognitive psychology / neuroscience) and theoreticians (with or without experience in cognitive modeling). Scientists from underrepresented groups and countries are especially encouraged to apply. The school is an EMBO Practical Course <https://www.embo.org/conferences-training/> and is organized by the Centre de Recerca Matemática <http://www.crm.cat>. A limited number of travel grants and childcare grants will be available. Organizers: Alex Hyafil (CRM, Barcelona) Marion Rouault (CNRS, Paris Brain Institute) Heike Stein (ENS, Paris) Chris Summerfield (Oxford / Deepmind) Klaus Wimmer (CRM, Barcelona) Confirmed Faculty: Kenji Doya (OIST Okinawa) Maria Eckstein (Deepmind) Alex Hyafil (CRM, Barcelona) Jakob Macke (Tuebingen) Yael Niv (Princeton) Heike Stein (ENS, Paris) Chris Summerfield (Oxford / Deepmind) Anne Urai (Leiden) Klaus Wimmer (CRM, Barcelona) Dates and location: July 16-25, 2024, downtown Barcelona, Spain Applications are open until February 16, 2024. Please see the course website for further details: www.bambschool.org.

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Summer Workshop on the Dynamic Brain
by Eric Shea-Brown 22 Jan '24

22 Jan '24

A warm invitation to apply to join the Summer Workshop on the Dynamic Brain. This is a computational neuroscience course, centered on student projects that leverage the wealth of Allen Institute data, particularly focused on neurophysiology, population dynamics, behavior, and connectivity data. Co-organized by the Allen Institute and the University of Washington’s Computational Neuroscience Center, the course takes place at UW’s Friday Harbor Laboratory in the San Juan Islands. This 2-week residential program is intended for researchers at the PhD student and postdoctoral level with an interest in developing the intersection of their scientific knowledge and their computational skills. While strong coding skills are not a prerequisite, there is a large emphasis on computation and coding during the course. Applications are due by February 1st, 2024. More information can be found on our Summer Workshop on the Dynamic Brain website. <https://urldefense.com/v3/__https://alleninstitute.org/events/summer-worksh…> If you have questions, please contact us at dynamicbrain(a)alleninstitute.org <mailto:dynamicbrain@alleninstitute.org>

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WCCI 2024 in Yokohama: submission deadline Jan 29
by Kenji Doya 22 Jan '24

22 Jan '24

WCCI 2024 is a joint conference on Neural Networks, Fuzzy Systems and Evolutionary Computation. The paper submission deadline has been extended to January 29. We hope to see many of you in the waterfront city of Yokohama this summer. === IEEE WCCI 2024 Call for Papers June 30 - July 5, 2024 @ Yokohama, Japan https://2024.ieeewcci.org IEEE WCCI 2024 is the world’s largest technical event on computational intelligence, featuring the three flagship conferences of the IEEE Computational Intelligence Society (CIS) under one roof: The International Joint Conference on Neural Networks (IJCNN), the IEEE International Conference on Fuzzy Systems (FUZZ-IEEE) and the IEEE Congress on Evolutionary Computation (IEEE CEC). WCCI and IJCNN Keynote Speakers: * Marios M. Polycarpou, University of Cyprus * Bernadette Bouchon-Meunier, CNRS-Sorbonne Université * Simon See, Nvidia * Saori Tanaka, NAIST & ATR * Akira Oyama, JAXA * Johan Suykens, Katholieke Universiteit Leuven * Masashi Sugiyama, Riken & University of Tokyo * Plamen Angelov, Lancaster University * Yukie Nagai, University of Tokyo * Divyashree-Shivakumar Sreepathihalli, Google IMPORTANT DATES - 29 January 2024: Paper Submission Deadline - 15 March 2024: Paper Acceptance Notification - 1 May 2024: Final Paper Submission & Early Registration Deadline - 30 June - 5 July 2024: IEEE WCCI 2024 Yokohama, Japan PAPER SUBMISSION Please read the paper submission guidelines (https://2024.ieeewcci.org/submission) before submitting your papers. * Each paper should not reveal author's identities (double-blind review process). * Papers will be checked for plagiarism. The Program Committee reserves the right to desk-reject a paper if it contains elements that are suspected to be plagiarized. * Submissions should be original and not currently under review at another venue. * Each paper is limited to 8 pages, including figures, tables, and references. A maximum of two extra pages per paper is allowed (i.e, up to 10 pages), at an additional charge of $100 per extra page. * All papers must be submitted through the IEEE WCCI 2024 online submission system. * For special session papers, please select the respective special session title under the list of research topics in the submission system. * In order for your papers to be included in the congress program and in the proceedings, final accepted papers must be submitted, and the corresponding registration fees must be paid by May 1, 2024 (11:59 PM Anywhere on Earth). * IEEE WCCI 2024 will present the Best Overall Paper Awards and the Best Student Paper Awards to recognize outstanding papers published in each of the three conference proceedings (IJCNN 2024, FUZZ-IEEE 2024, IEEE CEC 2024). The awards will be judged by an Awards Committee and the recipient of each award will be given a certificate of the award and a cash prize. * It is the policy of WCCI 2024 that new authors cannot be added at the time of submitting final camera ready papers. Please ensure that you are following this guideline to avoid any issues with publication. * WCCI 2024 adopts EDAS as the submission system, available at the following link: https://edas.info/N31614 NOTE IEEE WCCI 2024 will be primarily an in-person conference. However, the organization acknowledges that for a wide variety of reasons not all members can physically attend the conference and that traveling may simply be impossible. Therefore, the conference will provide the possibility for remote presentation (live online talk with live online Q&A) for remote authors. At least one remote author must register for the conference (regular registration, as IEEE Member or Non-Member). In addition to delivering the live online talk, remote authors are also asked to provide a recording their talk, which will be made available to all attendees to be viewed at their own convenience. The recorded talk will also be used as a backup just in case there are Internet connection problems during the live online talk. Remote attendees can attend only online sessions whereas on-site attendees can attend all sessions (i.e., both online and on-site sessions). ---- Kenji Doya <doya(a)oist.jp> Neural Computation Unit, Okinawa Institute of Science and Technology Graduate University 1919-1 Tancha, Onna, Okinawa 904-0495, Japan Phone: +81-98-966-8594; Fax: +81-98-966-2891 https://groups.oist.jp/ncu

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3 Year Shanahan Fellowships at Allen Inst. + UW -- apply by Feb 1
by Eric Shea-Brown 21 Jan '24

21 Jan '24

Sharing a unique and cool opportunity — the three year Shanahan Foundation Fellowships at the interface of data and neuroscience, open to early-career scholars from diverse disciplines, and co-hosted by the Allen Institute and the University of Washington’s Computational Neuroscience Center and eScience Institute in Seattle. Please head to https://alleninstitute.org/what-we-do/brain-science/careers/shanahan-founda… <https://alleninstitute.org/careers/internships-and-postbac/shanahan-foundat…>for more info and to apply to join us in Seattle, by Feb 1!

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Summer research internships at the FlatIron Institute, New York City
by Eero Simoncelli 20 Jan '24

20 Jan '24

Graduate students and advanced undergraduates: *Spend a summer doing research at the Flatiron Institute in NYC!* Information about the Center for Computational Neuroscience: https://www.simonsfoundation.org/flatiron/center-for-computational-neurosci… Information about our summer internship program (application deadline: 2 Feb 2024): https://apply.interfolio.com/137388 *Eero Simoncelli*Scientific Director | Center for Computational Neuroscience | FlatIron Institute, Simons Foundation Silver Professor | Neural Science, Mathematics, Data Science, and Psychology | New York University https://www.cns.nyu.edu/~eero

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Postdoctoral researcher in computational neuroscience and neuroinformatics
by Daniele Marinazzo 19 Jan '24

19 Jan '24

Dear colleagues I am happy to announce a postdoctoral position at Ghent University, Belgium, aligned with the initiatives of the EBRAINS 2.0 project, funded by the European Commission, with dozens of partners performing top level research across Europe. EBRAINS AISBL is a prominent contributor to the European digital neuroscience research infrastructure ( https://www.ebrains.eu/) Our exciting research program centers around DIGITAL TWIN Brain Models, leveraging neuroimaging data and the power of statistical inference. We aim to enhance scalability and reliability, facilitating the translation of personalized predictive medicine into clinical applications and innovations. Our goal is to seamlessly integrate this workflow into the EBRAINS ecosystem. The successful candidate will contribute to the development of the modeling and simulation framework essential for realizing the Digital Twin vision. More specifically, the selected candidate will contribute to building personalized workflows for biologically and anatomically inspired models for multiple datasets and to exploring different strategies for model inversion (from data to model structure and model parameters), exploiting the range of temporal and spatial scales present in EBRAINS. The outcomes will be integrated with data and models following the openMINDS metadata schemes and according to the BIDS standards. Please find all the info (including how to apply) at the link below https://jobs.ugent.be/job/Ghent-Postdoctoral-researcher-in-computational-ne…

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Multiple positions in the Naud Lab
by Richard Naud 19 Jan '24

19 Jan '24

Centre for Neural Dynamics and Artificial Intelligence, University of Ottawa We are recruiting multiple postdoctoral fellows and graduate students for projects in NeuroAI. The successful candidate will become an integral part of the Neural Coding lab and participate in a collaborative research environment. We have positions within three larger projects: 1) mathematical modeling of the electrical stimulation of cortex (a project co-lead with MIT and MGH), 2) an applied AI project with high-throughput neuroscience data (part of the Brain-Heart Initiative), 3) plasticity in large spiking neural network for real world applications (sponsored by industrial partners). Ottawa is a vibrant city, capital of Canada. For more information, see https://neurodynamic.uottawa.ca/ottawa.html. Qualifications: physics, computer science, mathematics, or engineering. Start date: As soon as a suitable candidate is found. Submit: CV, statement of research interest and contact for 3 references. Deadline: We will start reviewing applications January 30, 2024. Contact: rnaud(a)uottawa.ca<mailto:rnaud@uottawa.ca> (Richard Naud)

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new neuroscience course for people from machine learning
by Goodman, Daniel F M 18 Jan '24

18 Jan '24

Hi everyone, We made a free, open course on neuroscience for people with a machine learning or other quantitative background. You can use it to get started in computational neuroscience or just to indulge your neurocuriousity. I believe that neuroscience and ML can learn from each other and do better together than on their own. The course has 34 short videos from introductory topics right up to recent discoveries we still don't fully understand. We also have practical exercises focussed on open ended discovery, fully compatible with Google Colab. Check out the course website at: https://neuro4ml.github.io/ Over the next year, I'll be turning this into an 'interactive textbook' with videos, text and runnable code in one place, and welcoming contributions on new topics, corrections, etc. through GitHub issues. All our materials are freely licensed for reuse in your own courses too. Why this new course? There's a lot of intro neuroscience courses out there, and a lot of ML for neuroscientists, but I wanted this one to be specifically for quantitative people who are curious about the brain, interested in how it might be similar and different to ML. We hope you'll enjoy it! Thanks! Dan Goodman and Marcus Ghosh Imperial College London

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Call for applications for Systems Vision Science Virtual Summer School & Symposium, June 19 -July 12, 2024
by Pavlovic, Maria 18 Jan '24

18 Jan '24

Systems Vision Science Virtual Summer School & Symposium: June 19th - July 12th, 2024 -------------------------------- Applications are invited for a virtual edition <https://summerschool.lizhaoping.org/virtual-systems-vision-science-summer-s chool-symposium-2024/> of the Systems Vision Science Summer School and Symposium that took place in Max Planck Institute for Biological Cybernetics in Tuebingen, Germany in August 2023 <https://summerschool.lizhaoping.org/> . This year, the virtual edition enables students to attend from afar by formal lectures via Zoom and informal and social communications via a Slack channel. Systems Vision Science combines computational, behavioral, and neuroscience methods to discover functions and algorithms for vision in various brain regions and their implementations in neural circuits. This summer school is designed for everyone interested in gaining a systems level understanding of biological vision. We plan a coherent, graduate-level, syllabus on the integration of experimental data with theory and models. The syllabus content will be very similar to the edition in 2023, the learning format, the delivery, and social interactions will be adjusted to suit the virtual format. Experience or knowledge in (A) computational methods, (B) visual psychophysics, and (C) vision neuroscience, is not required. However, experience in at least one of (A), (B), and (C), and a readiness to learn, is expected. The Summer School will be followed by a Systems Vision Science Virtual Symposium on July 12th. All admitted summer school students will be invited to attend this symposium and are encouraged to submit for a presentation at the symposium. The symposium will also feature two invited keynote presentations. A certificate of completion of the summer school course will be provided after the student's successful completion of the summer school. -------------------------------- Important Dates: March 31, 2024 Deadline for applications April 12, 2024 Notification of acceptance April 29, 2024 Registration fees due June 19 - Virtual Systems Vision Science Summer School takes place July 10, 2024 (formal lectures via Zoom and informal and social communications via a Slack channel) July 12, 2024 Virtual Systems Vision Science Symposium takes place (3 -7 pm German time) -------------------------------- Please click here <https://summerschool.lizhaoping.org/virtual-systems-vision-science-summer-s chool-symposium-2024/> to find more details and to apply by March 31, 2024. Summer School admission will be based on interest/motivation and prior knowledge/experience of the applicants, and on how much the applicants could benefit from participation. Please direct inquiries to svs.summerschool(a)tue.mpg.de <mailto:svs.summerschool@tue.mpg.de> -------------------------------- Organizing Team Li Zhaoping Maria Pavlovic Junhao Liang Max Planck Institute for Biological Cybernetics University of Tuebingen www.lizhaoping.org <http://www.lizhaoping.org>

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Announcing Open Source Brain v2.0: NetPyNE, NWB Explorer and JupyterLab; ModelDB models and DANDI Archive datasets
by Padraig Gleeson 17 Jan '24

17 Jan '24

<Apologies for cross posting> We would like to announce a major new version of the Open Source Brain platform (v2.0) we have been working on which has a range of new features for you to try: https://v2.opensourcebrain.org. You can create cloud based, persistent workspaces which contain models and data from a number of sources (https://v2.opensourcebrain.org/repositories) including: - All *OSBv1* projects incorporating NeuroML and PyNN models - All *ModelDB* entries - All *BRAIN Initiative DANDI Archive* datasets containing NWB files Inbuilt applications which can open these workspaces include: *- NetPyNE UI*, a 3D graphical application for neuronal simulations (NeuroML compliant) *- NWB Explorer* for opening and visualising data in NWB files *- JupyterLab*, a full interactive Python environment, with a number of computational neuroscience, data analysis and machine learning packages preinstalled. Full documentation is at https://docs.opensourcebrain.org and a Guided Tour introducing the main features of the platform is here <https://docs.opensourcebrain.org/OSBv2/Guided_tour.html>. We are very keen for new users to try out our platform. Please note that you will require a different username/password for OSBv2 from OSBv1. We are also very happy to make dedicated resources available on the platform to support classes/tutorials/computational neuroscience schools. The Open Source Brain Initiative aims to: - Make neuroscience experimental data and computational models from around the world easily findable in a single location - Provide a free to use, collaborative, web based, interactive computing platform that integrates state of the art software tools for accessing and working with large scale data sets and computational models. - Encourage the use of standards for making research outputs more FAIR (Findable, Accessible, Interoperable and Reusable): OSBv2 supports NeuroML for models and NWB for data. Please get in contact if you would like to help us with any of these goals! Regards, The OSB Team

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CFP COMPLEX NETWORKS 2024 Istanbul Turkey December 10 - 12, 2024
by Hocine Cherifi 17 Jan '24

17 Jan '24

13 *th **International Conference on Complex Networks & Their Applications* Istanbul, Turkey December 10 - 12, 2024 COMPLEX NETWORKS 2024 <https://complexnetworks.org/> We encourage researchers from diverse disciplines to share their insights, engage in discussions, and contribute to the vibrant field of complex networks. Join us in Istanbul for a stimulating exchange of ideas and collaborations that transcend disciplinary boundaries. Submission Deadline: September 3, 2024 Submission Categories: Full papers (not previously published up to 12 pages) and Extended Abstracts (about published or unpublished research up to 4 pages) are welcome. · *Papers *will be included in the conference *proceedings edited by Springer* · *Extended abstracts* will be published in the *Book of Abstracts (with ISBN)* Publication Opportunities: Extended versions will be invited for publication in *special issues of international journals:* o PLOS <https://journals.plos.org/plosone/> one <https://journals.plos.org/plosone/> o PLOS COMPLEX SYSTEMS <https://journals.plos.org/complexsystems/> o Applied Network Science <https://appliednetsci.springeropen.com/> edited by Springer o Social Network Analysis and Mining <https://link.springer.com/journal/13278> edited by Springer o Advances in Complex Systems <https://www.worldscientific.com/toc/acs/24/02> edited by World Scientific o Entropy <https://www.mdpi.com/journal/entropy> edited by MDPI o Complex Systems <https://www.complex-systems.com/about/> *TOPICS* *Topics include, but are not limited to: * o Models of Complex Networks o Structural Network Properties and Analysis o Complex Networks and Epidemics o Community Structure in Networks o Community Discovery in Complex Networks o Motif Discovery in Complex Networks o Network Mining o Network embedding methods o Machine learning with graphs o Dynamics and Evolution Patterns of Complex Networks o Link Prediction o Multilayer Networks o Network Controllability o Synchronization in Networks o Visual Representation of Complex Networks o Large-scale Graph Analytics o Social Reputation, Influence, and Trust o Information Spreading in Social Media o Rumour and Viral Marketing in Social Networks o Recommendation Systems and Complex Networks o Financial and Economic Networks o Complex Networks and Mobility o Biological and Technological Networks o Mobile call Networks o Bioinformatics and Earth Sciences Applications o Resilience and Robustness of Complex Networks o Complex Networks for Physical Infrastructures o Complex Networks, Smart Cities and Smart Grids o Political networks o Supply chain networks o Complex networks and information systems o Complex networks and CPS/IoT o Graph signal processing o Cognitive Network Science o Network Medicine o Network Neuroscience o Quantifying success through network analysis o Temporal and spatial networks o Historical Networks We look forward to your submissions and your participation in COMPLEX NETWORKS 2024! The Organizers Join us at COMPLEX NETWORKS 2024 <https://www.complexnetworks.org/> *-------------------------* Hocine CHERIFI University of Burgundy Franche-Comté Laboratoire* I*nterdisciplinaire *C*arnot de *B*ourgogne - ICB UMR 6303 CNRS Editor in Chief Plos Complex Systems <https://plos.org/complex-systems-research-journal/#:~:text=PLOS%20Complex%2….> Founding & Adisory Editor Applied Network Science <https://appliednetsci.springeropen.com/> Editorial Board member PLOS One <https://journals.plos.org/plosone/>, IEEE ACCESS <https://ieeeaccess.ieee.org/?http%3A%2F%2Fieeeaccess_ieee_org%2F>, Scientific Reports <https://www.nature.com/srep/>, Journal of Imaging <https://www.mdpi.com/journal/jimaging>, Quality and Quantity <https://www.springer.com/journal/11135/>, Computational Social Networks <https://computationalsocialnetworks.springeropen.com/>, Complex Systems <https://www.complex-systems.com/>

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ACDL 2024, 7th Advanced Course on Data Science & Machine Learning - From Deep Learning to Generative AI | June 10-14 | Riva del Sole Resort & SPA - Italy -> Early Registration: by February 23
by Giuseppe Nicosia 17 Jan '24

17 Jan '24

* Apologies for multiple copies. Please forward to anybody who might be interested, thanks * #ACDL2024, An Interdisciplinary Course: From Deep Learning to Generative AI ACDL 2024 is a full-immersion 5-day course in Tuscany on cutting-edge advances in AI, Deep Learning, LLMs, Data Sc. & Generative AI with lectures delivered by world-renowned experts. If you want to learn NLP, Generative AI Transformers, Diffusion Models, Large language models, Vision - Large-scale vision models, Vision and language, Beyond vision and language, Multimodal Foundation Models and much more then take part in ACDL 2024! ;-) Riva del Sole Resort & SPA - Tuscany, Italy, June 10-14 https://acdl2024.icas.events acdl(a)icas.cc EARLY REGISTRATION: by February 23 (AoE) https://acdl2024.icas.events/registration/ Oral Presentation Submission Deadline: by February 23 (AoE) LECTURERS: Each Lecturer will hold up to four lectures on one or more research topics. https://acdl2024.icas.events/lecturers/ * Joseph Sifakis, Verimag Laboratory, Grenoble, France *Turing Award* Lecture(s) "Testing systems intelligence - A systems engineering perspective" * Gabriel Barth-Maron, DeepMind, London, UK 4 Lessons on "Multimodal Foundation Models" * Sven Giesselbach, Fraunhofer Institute - IAIS, Germany 5 Lessons on "Introduction on Foundation Models" * Ramin Hasani, MIT, USA 4 Lessons on "Continuous Neural Networks / Liquid Neural Networks" * Nora Kassner, DeepMind, London, UK "Large Language Models: Life after Pre-training" "Large Language Models: Evaluation" "Large Language Models: Reasoning and Factuality" "Large Language Models: Retrieval augmentation and Tool-use" * Petros Koumoutsakos, Harvard University, USA “Machine Learning for Modeling and Control of Complex Systems” 1/2 “Machine Learning for Modeling and Control of Complex Systems” 2/2 “Solving forward and inverse problems with and without neural networks” “Bayesian Uncertainty Quantification” * Maria Liakata, The Alan Turing Institute, UK 4 Lessons on "Longitudinal Language Processing with User Generated Content" * Panos Pardalos, University of Florida, USA Lectures 1-2 TBA Topics: Data Science, Application to Neuroscience * Jakub M. Tomczak, Eindhoven University of Technology, The Netherlands 4 Lessons on “Deep Generative Modelling” * Rianne van den Berg, Microsoft Research Amsterdam, The Netherlands 3 Lessons on "Diffusion Models" * Pascal Van Hentenryck, Georgia Institute of Technology, USA 3 Lessons on "Fusing Machine Learning and Optimization for Engineering" * Max Welling, University of Amsterdam, The Netherlands 3 Lessons on "Generalized Belief Propagation Algorithms for Tensor Network Contractions" More Lecturers TBA TUTORIAL SPEAKERS: TBA Each Tutorial Speaker will hold more than four lessons on one or more research topics. PAST LECTURERS: https://acdl2024.icas.events/past-lecturers/ ACDL 2024 VENUE: Riva del Sole Resort & SPA Località Riva del Sole‚ Castiglione della Pescaia (Grosseto) CAP 58043‚ Tuscany‚ Italy p: +39-0564-928111 e: booking.events(a)rivadelsole.it w: https://www.rivadelsole.it/en/ https://acdl2024.icas.events/venue/ PAST EDITIONS: https://acdl2024.icas.events/past-editions/ REGISTRATION: https://acdl2024.icas.events/registration/ CERTIFICATE & 8 ECTS: PhD students, Postdocs, Industry Practitioners, Junior and Senior Academics, and will be typical profiles of the ACDL attendants. The Course will involve a total of 36-40 hours of lectures, according to the academic system the final achievement will be equivalent to 8 ECTS points for the PhD Students (and some strongly motivated master student) attending the Course. At the end of the course, a formal certificate will be delivered indicating the 8 ECTS points. TO PARTICIPATE IN ACDL 2024, all attendants must (1/2) register for the course (by February 23, 2024) and (2/2) book accommodation at the course venue, Riva del Sole Resort & SPA‚ (by April 23, 2024); all attendants must stay at the Riva del Sole Resort & SPA. Once accommodation has been booked at Riva del Sole Resort & SPA‚ the participant must send this information (including the Booking Number) to the ACDL organizing committee (acdl(a)icas.cc) ACDL is a residential course, so all lecturers and participants must reside in the same Hotel (Riva del Sole Resort & SPA). No exceptions are made. For privacy reasons, the Hotel cannot match people. If you have someone to share the apartment with, please send to the Hotel ( booking.events(a)rivadelsole.it) the name, surname and email address. Otherwise the solution is to book an apartment in single use. Anyone interested in participating in ACDL 2024 should register as soon as possible. See you in Riva del Sole in June! Giuseppe Nicosia & Panos Pardalos - ACDL 2024 Directors. ACDL 2024 Scientific & Organizing Committees. https://acdl2024.icas.events acdl(a)icas.cc 7th Advanced Course on Data Science & Machine Learning - ACDL 2024, 10-14 June, Riva del Sole Resort & SPA, Castiglione della Pescaia (Grosseto) – Tuscany, Italy. An Interdisciplinary Course: Big Data, Deep Learning & AI without Borders Early Registration: by February 23, 2024 (AoE) The Course is equivalent to 8 ECTS points for the PhD Students and the Master Students attending the Course. https://acdl2024.icas.events/ 10th International Conference on Learning, Optimization and Data – LOD 2024, 22–25 September, Riva del Sole Resort & SPA, Castiglione della Pescaia (Grosseto) Tuscany, Italy https://lod2024.icas.events/ lod(a)icas.cc Submission Deadline: March 23 4th Advanced Course and Symposium on Artificial Intelligence and Neuroscience – ACAIN 2024, 22–25 September Riva del Sole Resort & SPA, Castiglione della Pescaia (Grosseto) Tuscany, Italy https://acain2024.icas.events/ acain(a)icas.cc Symposium Submission Deadline: March 23 Early Registration Deadline for the Course: March 23 The Course is equivalent to 8 ECTS points for the PhD Students and the Master Students attending the Course. ICAS - The Interdisciplinary Centre of Advanced Studies https://icas.cc/

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PhD position: Effects of music on sleep EEG
by Martin Dresler 17 Jan '24

17 Jan '24

Hi, Within the Lullabyte.org consortium, one additional PhD position needs to filled, combining neuroscience, musicology and AI. The project will investigate the effects of generative music on sleep, as measured by wearable sleep EEG. The position will be integrated into the highly collaborative and interdisciplinary European Marie Curie Network Lullabyte.org, working on the intersection of musicology, sleep research, and AI. It will be mostly based at Endel.io in Berlin, with secondments to the Technical University Dresden and the Donders Institute in Nijmegen/NL. Requirements: training in both music and neuroscience, with a master degree or equivalent in one of the following (or related) fields: musicology, music technology, computer music, neuroscience, psychology. Application until 24-01-2024, starting date as soon as possible. Please send your applications including a brief (1-2 pages) motivation letter, CV, and contact information for two references to miriam.akkermann(a)tu-dresden.de Cheers, Martin Donders Sleep & Memory Lab, Radboud University Medical Center Kapittelweg 29, 6525 EN Nijmegen, Netherlands https://dreslerlab.org

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Effort and time trade-offs during foraging : PhDD position.
by Ahmed El Hady 17 Jan '24

17 Jan '24

Imagine that you need to catch a bus to return home after work. Will you decide to run as fast as possible to catch the first incoming bus? Or will you walk slowly to save your energy after an exhausting day, at the risk of missing this first bus and arriving late at home? Foraging tasks are emerging as crucial models for naturalistic decision making in rodents . On mechanistic level, those tasks give us the opportunity to understand how individual sensitivities to time and effort drive variability in the strategy of rodents facing an explore vs exploit dilemma. If those questions are of interest to you , there is an opening for a PhD position at the Centuri Turing Center for living systems in Marseille where the project is advised by David Robbe ( INMED, Marseille) , Eloy Christophe ( IRPHE, Marseille) and Ahmed El Hady ( Cluster for Advanced Study of Collective Behavior, Konstanz ). The project will combine theoretical and experimental approaches to understand how foraging strategies vary in terms of their sensitivities to time and effort during a variety of experimental conditions. We are looking for a candidate with a strong quantitative background, capable to developing numerical simulation/model (i.e. strong programing skills) and with a strong taste for animal behavior and cognition For more details and application procedure , please check the website : https://centuri-livingsystems.org/phd2024-19/ Please do not hesitate to get in touch in case you have any questions, Ahmed El hady Dr. Ahmed El Hady Group Leader Cluster for Advanced Study of Collective Behavior Max Planck Institute of Animal Behavior Universitätsstraße 10, 78464 Konstanz Room ZT 907 Postbox 687 Tel.: +49 7531 88-4742

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Postdoc position in Montreal (McGill)
by Becket Ebitz 16 Jan '24

16 Jan '24

Do you want to know what mice think about when they are on mushrooms? Are you interested in using computational models to compare how mice and humans think? The Behavioural Neurogenomics Lab (https://www.bagotlab.org) at McGill University is looking for a highly motivated computational neuroscience postdoc to lead a newly funded collaboration examining the neural bases of effects of stress and psychedelics on reward processing in mice and humans. This is a fully funded position intersecting computational modeling, neural circuit interrogation and robust behavioural paradigms. Based in Montreal, the candidate will work closely with the Noise Lab at Universite de Montreal (https://ebitzlab.com/) and the Mayo Lab ( https://profiles.ucalgary.ca/leah-mayo) at University of Calgary to develop new approaches for the comparative study of the neural processing of reward. The candidate must have a PhD in computational neuroscience, psychology, cognitive science or a quantitative discipline as well as fluency in Matlab or Python and experience in statistical data analysis and an interest in translational or comparative research. Ideally, the candidate would have some background in cognitive and/or reinforcement learning models, generalized linear models, hidden Markov models or probabilistic graphical models. Anticipated start date April 1, 2024 for an initial term of 1 year with the possibility of renewal. Come join an exciting, diverse team in a unique city with a supportive, and highly collaborative environment! To apply, please send a PDF of your CV to rosemary.bagot(a)mcgill.ca with a list of three potential references to contact. In your email, please describe 1) why you are interested in the position and 2) how your prior experience relates to this research opportunity.

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Overlapping versus non-overlapping community models
by Greg Rosenbaum 16 Jan '24

16 Jan '24

I’ve been reading a lot about network community structure, in the context of large-scale brain networks. One of my favorite papers on the subject was Betzel and Bassett (2016) <https://www.sciencedirect.com/science/article/pii/S1053811916306152>. However, most papers I’ve read, including Betzel and Bassett (2016), partition a network into disjoint communities. I’ve also encountered some publications that use overlapping communities instead, such as Najafi et al. (2016) <https://www.sciencedirect.com/science/article/abs/pii/S1053811916300957.>. This seems like an important choice. I think I agree with Najafi et al. (2016) that overlapping communities can reveal more about brain structure. For example, consider a case of two overlapping communities. They will share a common core – their intersection. Due to how communities are generated, the intersection would necessarily be highly coherent and form a community in its own right at a different resolution. In other words, we’d have two systems that share the same structure, reusing it for different purposes. This kind of reuse is a core principle in system architecture. It makes sense to see it in the brain. However, the two papers I’ve cited are pretty old at this point. Has there developed a consensus about what kind of community model is best suited for studying the brain?

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[Meetings] Deadline reminder: 2024 Nengo Summer School Call For Applications
by Michael Furlong 15 Jan '24

15 Jan '24

Dear colleagues, Please note that the deadline for application submission to the Nengo Summer School, February 1st, 2024, is approaching. [All details about this school can be found online at https://www.nengo.ai/summer-school] The Centre for Theoretical Neuroscience at the University of Waterloo is excited to announce our 9th annual Nengo summer school on large-scale brain modelling and neuromorphic computing. This two-week school will teach participants to use the Nengo simulation package to build state-of-the-art cognitive and neural models to run both in simulation and on neuromorphic hardware. Summer school participants will be given on-site access to neuromorphic hardware and will learn to run high-level applications using Nengo! More generally, Nengo provides users with a versatile and powerful environment for designing cognitive and neural systems and has been used to build what is currently the world's largest functional brain model, Spaun, which includes spiking deep learning, reinforcement learning, adaptive motor control, and cognitive control networks. For a look at the last in-person summer school, check out this short video: https://youtu.be/vRcN5-0wdQE We welcome applications from all interested graduate students, postdocs, professors, and industry professionals with a relevant background. ***Application Deadline: February 1, 2024*** Format: A combination of tutorials and project-based work. Participants are encouraged to bring their own ideas for projects, which may focus on testing hypotheses, modelling neural or cognitive data, implementing specific behavioural functions with neurons, expanding past models, or providing a proof-of-concept of various neural mechanisms. Hands-on tutorials, work on individual or group projects, and talks from invited faculty members will make up the bulk of day-to-day activities. A project demonstration event will be held on the last day of the school, with prizes for strong projects! Participants will have the opportunity to learn how to: * interface Nengo with various kinds of neuromorphic hardware (e.g. BrainDrop, SpiNNaker) * build perceptual, motor, and sophisticated cognitive models using spiking neurons * model anatomical, electrophysiological, cognitive, and behavioural data * use a variety of single cell models within a large-scale model  * integrate machine learning methods into biologically oriented models * interface Nengo with cameras and robotic systems * implement modern nonlinear control methods in neural models * and much more… Date and Location: June 2nd to June 14th, 2024 at the University of Waterloo, Ontario, Canada. Applications: Please visit http://www.nengo.ai/summer-school, where you can find more information regarding costs, travel, lodging, along with an application form listing required materials. If you have any questions about the school or the application process, please contact Michael Furlong (michael.furlong(a)uwaterloo.ca) The school is partly supported by ABR, Inc. We look forward to hearing from you!

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Postdoc in neural data analysis at the University of Edinburgh
by Angus Chadwick 15 Jan '24

15 Jan '24

Dear all, We invite applications for a Postdoctoral Research Associate to work on an exciting project developing novel methodologies for analysis of large-scale neural recordings over learning. This project is part of an international collaboration between the labs of Dr Angus Chadwick (University of Edinburgh), Prof Alex Cayco-Gajic (École Normalé Supérieure) and Prof Matthew Perich (Université de Montréal). The successful candidate will build upon a method recently developed by the host lab (Dr Chadwick) together with collaborator Prof Cayco-Gajic (Pellegrino, Cayco-Gajic* and Chadwick*, NeurIPS 2023). The project involves development of novel data-analytic methodologies and application to cutting-edge neural datasets collected during motor and perceptual learning tasks. In particular, the candidate will build upon the recent line of work by the supervisory team: https://arxiv.org/abs/2308.11567 https://www.sciencedirect.com/science/article/pii/S0896627322009059 https://www.sciencedirect.com/science/article/abs/pii/S0959438823000843 The role is based primarily at the Institute for Adaptive and Neural Computation at the University of Edinburgh. Funding is available to undertake extended research visits to the labs of international collaborators at École Normale Supérieure and Université de Montréal. This is a full-time position, with an initial appointment of 18 months, and available to start immediately. There full job ad can be viewed here: https://elxw.fa.em3.oraclecloud.com/hcmUI/CandidateExperience/en/sites/CX_1… To apply, please email Dr Angus Chadwick at angus dot chadwick at ed.ac.uk with a CV and contact details for two references. Informal inquiries are also encouraged. Applications will be considered until the position is filled, with priority for those submitted before 9th February 2024. Best wishes, Angus Chadwick The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. Is e buidheann carthannais a th' ann an Oilthigh Dhùn Èideann, clàraichte an Alba, àireamh clàraidh SC005336.

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Call for Cosyne workshop contributed short talks
by Cristina Savin 15 Jan '24

15 Jan '24

Hello all We invite the community to submit short abstracts on relevant recent results documenting limitations of current tools, unexpected negative results and/or potential new ideas to overcome them. We will select a small number of contributed talks from these submissions as part of our Cosyne “I can't believe it's not better!” workshop. Submissions from junior researchers are particularly welcome. Deadline: January 31st Details about the workshop and the abstract submission process can be found on our workshop webpage: https://cosyne2024-icbinb.github.io/ We look forward to seeing many of you in Cascais! Cristina Savin and Alex Williams

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