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Call for submissions: Frontiers Research Topic on “Neuroinformatics of Large-Scale Brain Modelling”
by John Griffiths 11 Feb '21

11 Feb '21

Dear all, We are excited to announce an upcoming Research Topic, jointly within Frontiers in Neuroinformatics and Frontiers in Computational Neuroscience, on “Neuroinformatics of Large-Scale Brain Modelling”. This Research Topic will document the various ways in which neuroinformatics approaches are being applied in large-scale brain modelling, informing readers on both established practices and emerging techniques. We seek Original Research, Review, Mini-Review, Hypothesis and Theory, Perspective, and Opinion articles that cover, but are not limited to, the following topics: - Ontologies, systems, and tools for definition and specification of large-scale neural models - New approaches to parameter optimization, parameter space exploration, and systematic tracking of simulation behaviour across parameter combinations - Informing neural models with genetic and multi-omic data from large-scale databases and individual patients/subjects - Systematic computational modelling studies on large numbers of subjects, and/or using large-scale open-access datasets (HCP, ABCD, etc.) - ‘Hybrid’ modelling schemes that combine mean-field with spiking network models - ‘Hybrid’ approaches to defining connectivity in large-scale brain models (e.g. supplementing tractography with microscopy data for higher-resolution subcortical connectivity structure) - Simulations using high-resolution neuroanatomical data from initiatives such as BigBrain, Allen Institute, etc. - ‘High-density’ (large number of regions; small parcels) connectome-based neural mass modelling - Other neuroinformatics challenges and solutions in large-scale brain simulations - Comparisons between detailed spiking/morphological simulations and neural mass model simulations - Comparisons between models based on high-resolution and low-resolution Allen atlas connectivities Full details can be found on the research topic webpage at: www.frontiersin.org/research-topics/16641/neuroinformatics-of-large-scale-b… If you are considering submitting, please submit an abstract by Fri 26 Feb 2021. Deadline for submission of full manuscripts is Fri 30th July 2021. We look forward to your hearing from you and sharing this exciting work with the community. Your Research Topic co-editors, John Griffiths Padraig Gleeson Kelly Shen -- Dr. John D. Griffiths Independent Scientist @ Krembil Centre for Neuroinformatics, CAMH, Toronto Assistant Professor @ Department of Psychiatry & Institute of Medical Sciences, University of Toronto www.grifflab.com ~~~ Frontiers in Neuroinformatics & Frontiers in Computational Neuroscience joint Research Topic: “Neuroinformatics of Large-Scale Brain Modelling” *Eds. John Griffiths, Kelly Shen, Padraig Gleeson* *Now accepting submissions! * Abstract deadline 26 Feb 2021. Manuscript deadline 30 July 2021. See topic page here <https://www.frontiersin.org/research-topics/16641/neuroinformatics-of-large…> for more info

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Visiting Assistant professor position (3yr - Psychology, broad)
by Blustein_Daniel 10 Feb '21

10 Feb '21

Dear colleagues, We are looking to hire a 3-year Visiting Assistant Professor of Psychology at Rhodes College in Memphis, TN, USA. This is a teaching heavy position but the job posting is broad and we would be very open to hiring someone working in computational neuroscience. Job ad: https://jobs.rhodes.edu/postings/3525 If you have any questions about the position, department or school, please reach out to me at blusteind(a)rhodes.edu<mailto:blusteind@rhodes.edu> Sincerely, Dan Blustein, PhD Assistant Professor of Psychology & Neuroscience Rhodes College 901-843-3963

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Postdoctoral positions at PONS Centre Charité-Universitätsmedizin Berlin
by Winterer, Jeanne 10 Feb '21

10 Feb '21

The Centre for Population Neuroscience and Stratified Medicine (PONS) at the Clinic for Psychiatry and Psychotherapy at the Charité- Universitätsmedizin Berlin has two postdoctoral positions to offer: 1. Postdoctoral Research Fellow in Population Neuroscience The PONS Centre at the Charité-Universitätsmedizin Berlin is seeking a talented and highly motivated postdoctoral researcher to investigate environmental influences on brain development and behaviour, with a particular emphasis on global mental health. The PONS Centre aims to identify risk constellations and neurobehavioral trajectories for mental disorders and their moderation by global environmental challenges. The research will involve comparative analyses of large scale behavioural neuroimaging datasets in Europe, India, China and USA. Applying advanced statistical methods and innovative methodology, such as remote sensing satellite data, the project seeks to investigate how environmental challenges associated with urbanization, climate change, pollution or pandemics shape brain structure/function and behaviour. PONS Charité works in close collaboration with its partner institute PONS Fudan, at the Institute of Science and Technology for Brain-inspired Intelligence (ISTBI), Fudan University, Shanghai. Areas of responsibility: • Take a leading role in development, adaptation and implementation of state of the art stratification and prediction techniques, including advanced representational approaches. • Apply these approaches to large scale, high dimensional datasets involving neuroimaging, behavioural, environmental and –omics. • Take a leading role in the publication and dissemination of data. • Present at academic meetings and contribute to the visibility of the project and its aims. • Work as a conscientious and committed member of the team in order to achieve the aims of the project. • Assist with the supervision of PhD and MSc candidates and with the general running of the group. Qualifications: • PhD in a relevant discipline (computer science, biomathematics) awarded, or thesis submitted, or thesis near completion. • A very good understanding of biomathematical and computer science methods applicable for phenotype stratification and prediction. • Experience of working with behavioural, epidemiologic and/or biological datasets. • Thorough conceptual understanding and experience in machine learning or/and deep learning methodology. • Evidence of the ability to publish in high-impact scientific journals. • Strong interpersonal skills, including willingness to introduce and help other colleagues with mathematics/statistics skills. • Good organisational skills. • Professional and enthusiastic attitude. • German language skills desirable, but not essential. 1. Postdoctoral Research Fellow in Precision Medicine The PONS Centre is seeking a postdoctoral fellow for a research programme funded by the European Research Council to develop the framework of a novel psychiatric taxonomy based on quantifiable neurobehavioural measures. This will be achieved by relating functional and structural neuroimaging measures as well as (epi-)genomic and environmental characterisations to behavioural symptom groups in both cross-sectional and longitudinal data. Being defined by shared neural mechanisms, these symptom groups will provide markers for stratification and prediction of mental illness. The work will involve a good understanding of the neural correlates of behaviour, and experience in the analysis of neuroimaging data using advanced statistics. PONS Charite works in close collaboration with its partner institute PONS Fudan, at the Institute of Science and Technology for Brain-inspired Intelligence (ISTBI), Fudan University, Shanghai. Areas of responsibility: • To contribute to the development of a framework for a novel psychiatric taxonomy based on quantifiable neurobehavioural measures. • To relate functional and structural neuroimaging measures as well as (epi-)genomic and environmental characterisations to behavioural symptom groups in both cross-sectional and longitudinal data • The publication, report generation and dissemination of data arising from this project • Attend and present at academic meetings and contribute to the visibility of the project and its aims. • Assist with the supervision of PhD and MSc candidates and with the general running of the group • Undertake any other reasonable duties that may be relevant to the role outline Qualifications: • PhD in psychology, neuroscience, sociology, computer science or a related discipline - awarded, or thesis submitted • Experience in imaging genetics and behavioural research • Experience in multimodal analyses of behavioural assessments, neuroimaging and –omics data using advanced statistics • Evidence of the ability to publish in high-impact scientific journal. • Excellent written and verbal communication • Professional and enthusiastic The starting date of both postdoctoral positions would be the 1st of May 2021 with a length of 20 months of employment (40 hrs/week). Applicants should send the application materials to Jeanne.winterer(a)charite.de. Application information includes cover letter, including research plan, CV, Certificates, list of publications. Application material can be submitted until the 15th of March 2021. Contact information: For questions, please do not hesitate to contact Professor Gunter Schumann, email: gunter.schumann1961(a)gmail.com<mailto:gunter.schumann1961@gmail.com> and Jeanne Winterer, email: Jeanne.winterer(a)charite.de<mailto:Jeanne.winterer@charite.de>.

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Postdoctoral positions at NIPS in Japan: Computational modeling of synaptic biochemical signaling
by Hidetoshi URAKUBO 08 Feb '21

08 Feb '21

Dear researchers: We invite applications for a postdoctoral researcher in the area of mathematical/computational modeling of biochemical signaling in neuronal synapses. Based on a grant (#), A new collaborative project with Kyoto U and Nagoya U has been launched for the modeling of liquid-liquid phase separation (LLPS) of synaptic molecules. The successful candidate will develop computational/theoretical models that describe the LLPS and simulate the spatiotemporal dynamics of synaptic biochemical signaling, to elucidate how our learning and memory are organized. We expect who will conduct Monte Carlo simulation under the scheme of the Flory-Huggins (FH) theory, as well as the reaction-diffusion simulation of biochemical molecules. (#) Spatiotemporal dynamics of intracellular components, CREST, Japan Science and Technology Agency (JST), Japan. https://www.jst.go.jp/kisoken/crest//en/research_area/ongoing/area2020-1.ht… We are also conducting a long-standing project on electron microscopic (EM) connectomics. We will welcome the applicants who can contribute to this project from the informatics aspect. National Institute for physiological science (NIPS) is a high-quality national institute for neuroscience in Japan, like Riken CBS. NIPS is located in Aichi prefecture, the middle part of Japan. https://www.nips.ac.jp/eng/ https://en.wikipedia.org/wiki/Aichi_Prefecture http://www2.aia.pref.aichi.jp/tope/foreigner.html Please feel free to ask questions about this research position to Hidetoshi Urakubo (urakubo(a)nips.ac.jp) 1. Job title Full-time Postdoctral Researcher 2. Begin date April 1st 2021 (negotiable) 3. Appointment period Annually renewed based on evaluation. Up to Sep/2025. 4. Workplace NIPS, Okazaki, Japan http://www.nips.ac.jp/circuit/ 5-1 Myodaiji-Higashiyama, Okazaki, Aichi, 444-8787, Japan 5. Qualifications Applicants must: - have Ph.D. (or be near the completion of the degree). - have strong motivations and ambitions to participate in the research above. 6. Compensation Salary will be commensurate with qualifications and experience. Social insurance will be applied. Days off include public holidays, New Year's holidays (Dec. 29 - Jan 3), summer vacation, and sick leave. These and other provisions are in accordance with NIPS regulations. Please inquire it with your CV if the salary information is needed at the early stage of selection. 7. Required documents Please send the following five materials to the email address below: 7-1. Complete CV 7-2. List of publications 7-3. Reprints of 1 to 3 major publications 7-4. Document (one or two pages in A4 or letter size) describing: - Summary of your previous research - Interests and proposal for research - Technical skills (programming skills, etc) 7-5. Two letters of recommendation (including one from the current supervisor, if available) 8. Deadline February 28 (Sun), 2021 (will be extended) 9. Selection Selection will be made based on application screening and interviews. 10. Application and Contact Hidetoshi Urakubo, Ph.D. Email: urakubo(a)nips.ac.jp Project Assistant Professor, Division of Cerebral Circuitry, Department of Fundamental Neuroscience, National Institute for Physiological Sciences (NIPS), 5-1 Myodaiji-Higashiyama, Okazaki, Aichi, 444-8787, Japan Phone: +81-564-59-5280 https://researchmap.jp/urakubo?lang=en http://www.nips.ac.jp/circuit/

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Special issue: Information Processing in Neuronal Circuits-Journal Biology
by alireza valizadeh 08 Feb '21

08 Feb '21

CFP: Special issue on “*Information Processing in Neuronal Circuits and Systems*” Dear colleagues, Together with Claudio Mirasso we are organizing a special issue in the journal “Biology” on the topic “*Information Processing in Neuronal Circuits and Systems*”. We would like to invite you to contribute your research to this special issue. For more information please visit the website https://www.mdpi.com/journal/biology/special_issues/neuronalcircuits Submission deadline: *7 May, 2021*. *Special Issue Information* The question of how the brain integrates the multiplicity of local processes dispersed throughout its entire anatomy is a fundamental question in neuroscience. Such integration is mediated by information exchange between brain areas, and other parts of the nervous system, through routes that can change rapidly to provide a flexible effective connectivity despite the rigidity of the anatomical connections. The flexibility of the information routing and effective connectivity are consequences of the multi-stability of the collective dynamics of the neuronal networks. In other words, a single structural connection can support plenty of degenerate dynamic states for each of which a special pattern of information transfer between the nodes can take place. Collective neuronal oscillations are hypothesized to provide such a basis for the dynamic communication between brain regions. In this Special Issue, the notion of information transfer and routing in neuronal circuits and systems will be addressed with a focus on shedding light on the mechanisms that regulate information transmission in the brain and in the nervous system in general. Please contact us in case you need more information about this special issue. Best, Alireza Valizadeh Topic editors: Claudio R. Mirasso, Universitat Illes Balears, Instituto de Física Interdisciplinar y Sistemas Complejos, Spain (claudio(a)ifisc.uib-csic.es) Alireza Valizadeh, Institute for advanced Studies in Basic Sciences, Iran ( valizade(a)iasbs.ac.ir) -- ------------------------------------------------------------------------ Alireza Valizadeh Associate professor Neurophysics lab, Institute for Advanced Studies in Basic Sciences (IASBS) School of cognitive sciences, Institute for research in fundamental sciences (IPM) Zanjan, Iran Tel:(+98) 24 3315 2120 Fax:(+98) 24 3315 2104 valizade(a)iasbs.ac.ir Web: http://www.iasbs.ac.ir/~valizade/index.html ------------------------------------------------------------------------

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PhD studentship on “Computational modelling of spiking neural network self-organization” at the University of Surrey (UK)
by roman bauer 07 Feb '21

07 Feb '21

*Computational modelling of spiking neural network self-organization* A PhD studentship is available in the lab of Dr Roman Bauer at the Department of Computer Science at the University of Surrey (Guildford, UK). The successful candidate will use computer simulations to study how spiking neural networks can give rise to function, such as classification/prediction of spatio-temporal (visual or auditory) signals. This will contribute to novel technologies for neurally inspired computing, and help shine light shine on how neuronal circuits in the brain operate. This particular PhD studentship will be conducted in co-operation with the BioDynaMo collaboration, where open-source code for the neuroinformatics/computational neuroscience research community is developed. Successful applicants will become part of a vibrant PhD community and will benefit from the strong research environment and high international visibility of the Department. Its researchers publish regularly in top conferences and journals and are renowned experts in their fields, developing innovative, practical solutions to real world problems. The Department has strong links with industry and active collaborations with academic institutions worldwide. *Background:* The ideal candidate will have experience in computer science / physics / mathematics or similar. Proficiency in an object-oriented programming language is required. Previous experience in the modelling and simulation of spiking neural networks would be desired. *Funding:* Each PhD studentship comes with a stipend of £16,000 per annum plus tuition fees covered for the duration of 3 years for UK/EU candidates. International candidates are welcome to apply but will need to cover the difference between the UK/EU and overseas fees. More details including instructions for the application can be found at: https://www.surrey.ac.uk/fees-and-funding/studentships/phd-studentships-com…. Interested candidates are encouraged to contact the lead supervisor Dr Roman Bauer (r.bauer(a)surrey.ac.uk) Application deadline is 21st of February, 2021.

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Focus on Criticality and Complexity in Brain Dynamics
by Claudius Gros 05 Feb '21

05 Feb '21

Dear colleagues A short reminder: Together with Dante Chialvo, we are editing a Focus on Criticality and Complexity in Brain Dynamics Journal of Physics: Complexity Deadline 30 April 2021 https://iopscience.iop.org/journal/2632-072X/page/Focus_on_Criticality_and_… exity_in_Brain_Dynamics Among others, we are especially interested in compact perspectives, e.g. on -- experimental and theoretical methodology -- 'critical' assessments of underlying concepts -- controversial viewpoints We hope that the focus on brain criticality and complexity will be a place to assess where the field stands and where the fields needs to go. Please do not hesitate to contact us for any further information. We are looking forward to your contribution! Claudius Gros ### ### Prof. Dr. Claudius Gros ### http://itp.uni-frankfurt.de/~gros ### ### Complex and Adaptive Dynamical Systems, A Primer ### A graduate-level textbook, Springer (2008/10/13/15) ### ### Life for barren exoplanets: The Genesis project ### https://link.springer.com/article/10.1007/s10509-016-2911-0 ###

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Open Position: Post-Doctoral Fellowship in Reproducible Neuroimaging Analysis
by Sean Hill 05 Feb '21

05 Feb '21

The Krembil Centre for Neuroinformatics has an open position for a postdoc with experience in neuroimaging and software engineering: "Post-Doctoral Fellowship in Reproducible Neuroimaging Analysis” The Krembil Centre for Neuroinformatics (PI Dr. Sean Hill, http://krembilneuroinformatics.ca/)Toronto, is looking to hire a Post-Doctoral Fellow with a strong background in Neuroimaging and Software Engineering. The successful candidate shall spearhead the group's efforts in developing a comprehensive open science platform that captures a range of experimental data, produces a semantic representation that links related scientific content, and provides users with data discovery tools. Working jointly between the Krembil Centre and Radiologics, the successful candidate will be involved cutting-edge development an electronic laboratory notebook platform that enables reproducible human neuroscience workflows. This work will support a global collaborative effort for Accelerating research on Consciousness: An adversarial collaboration to test contradictory predictions of Global Neuronal Workspace and Integrated Information Theory. Led by Dr. Lucia Melloni research on consciousness by providing decisive, field-transformative evidence in favor of one this project will accelerate theory and against the other. It will also establish a groundbreaking model for scientific practices in cognitive neuroscience at large, by demonstrating the impact of team-based adversary research and open data. This will address major riddles in the field, much like established practices in other fields such as physics and genomics have done. Thus, this project may dramatically change the landscape of research—that is, the social practices and norms—in the field of cognitive neuroscience. https://www.templetonworldcharity.org/projects -database/accelerating-research-consciousness- adversarial -collaboration-test-contradictory The platform will enable researchers to define their experiment protocols, capture and manage experiment metadata associated with these protocols, and publish the resulting data sets to a semantically enabled search engine. The platform will provide the basis for creating interactive publications from which each analysis result and figure is linked through structured provenance record to its original source data and analysis pipelines. • To develop an open source electronic laboratory notebook to support reproducible analysis of data that encompasses the most commonly used techniques in human neuroscience: fMRI, MEG, EEG and ECoG. • To develop standards for data annotation and exchange of data and metadata. • To publish those metadata via a semantically-enabled search engine. • The platform will build on several key components. The e -notebook will advance the pilot software currently in development and will include a user-friendly app-based interface to define the structure and content of experiments including the most common cognitive neuroscience experimental methods (fMRI, EEG, MEG, and ECOG). • The system will integrate XNAT, developed in Dr. Marcus’ laboratory at Washington University andatRadiologics(Marcusetal,2007) and BlueBrainNexus(bluebrainnexus.io)platform developed by a team led by Dr. Hill (Kaufmann et al., 2018). XNAT and Nexus are widely-used, open source applications that have been instrumental in advancing reproducible science. The successful candidate will have a PhD in neuroscience, engineering, physics, psychology, or related area, a track record for independent research, and a strong publication record. Strong programming skills and familiarity with neuroimaging data (s/d/fMRI and/or M/EEG) are required; experience with software development, semantic databases and data models are advantageous. For inquiries, please email David Rotenberg (David.Rotenberg(a)camh.ca) with the title “Post-Doctoral Fellowship Reproducible Neuroimaging Platform” in the subject line." https://www.camh.ca/en/science-and-research/institutes-and-centres/krembil-… — Sean Hill, Ph.D. Scientific Director, Krembil Centre for Neuroinformatics Senior Scientist, Campbell Family Research Institute Centre for Addiction and Mental Health Professor, University of Toronto Faculty Affiliate, Vector Institute for Artificial Intelligence Infrastructure Co-lead, University of Toronto Temerty Centre for Artificial Intelligence Research and Education in Medicine (T-CAIREM) Titular Professor, École polytechnique fédérale de Lausanne, Switzerland KrembilNeuroinformatics.ca CONFIDENTIALITY NOTICE: This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies of the original message. AVIS DE CONFIDENTIALITÉ : Ce message électronique, ainsi que tout fichier qui y est joint, est reserve à l'usage exclusif du destinataire visé et peut contenir des renseignements confidentiels et privilégiés. Toute lecture, utilisation, divulgation ou distribution non autorisée est interdite. Si vous n'êtes pas le destinataire visé, veuillez en aviser l'expéditeur par retour de courriel et détruire toutes les copies du message original.

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Open postdoc position in plasticity in action execution (Washington DC)
by Ella Striem-Amit 05 Feb '21

05 Feb '21

*Postdoctoral researcher position in plasticity in action execution* The SAMP Lab (Sensory and motor plasticity, Ella Striem-Amit’s lab) at Georgetown University (Washington DC, USA) is looking for a passionate and dedicated Postdoctoral researcher to work on a project on plasticity and abstractness in action execution. The SAMP lab explores the balance between innate brain organization and experience-dependent plasticity by studying models of sensory and motor deprivation using behavioral and fMRI state of the art analytical techniques. Specifically, in this project we will explore neural action representations which are independent from the body part used to execute them, studying people born without hands. For detail of the lab see *samp-lab.facultysite.georgetown.edu <http://samp-lab.facultysite.georgetown.edu/>*, and a relevant recent publication: *www.pnas.org/content/117/45/28433 <http://www.pnas.org/content/117/45/28433>*. Excellent understanding of and experience with fMRI and data analysis are required. Strong programming skills (Matlab/R/python, etc.) are also a requirement. Experience with behavioral methods used in motor control and mapping is desirable but not a requirement. The position is not limited to US citizens. The start date is flexible, but preferably May-July 2021.This position is available for two years, and can be extended further based on performance. To apply, please send your CV, a brief statement of research interests and a copy of your recent, representative publication by email to Dr. Ella Striem-Amit (*Ella.StriemAmit(a)georgetown.edu <Ella.StriemAmit(a)georgetown.edu>*) with the subject line: “post-doc application”. Georgetown University is an Equal Opportunity/Affirmative Action Employer fully dedicated to achieving a diverse faculty and staff. All qualified applicants are encouraged to apply and will receive consideration for employment without regard to race, color, religion, national origin, age, sex, disability status, protected veteran status, or any other characteristic protected by law. -- *Ella Striem-Amit (she/her)* Sensory and Motor Plasticity (SAMP) Lab Edwin H. Richard and Elisabeth Richard Assistant Professor Department of Neuroscience Georgetown University Medical Center 3970 Reservoir Rd., NW Washington, DC 20007 http://samp-lab.facultysite.georgetown.edu/

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Announcing the 1st Brain-Computer Interface Un-Conference (BCI-UC)
by Moritz Grosse-Wentrup 05 Feb '21

05 Feb '21

Dear Colleagues: We cordially invite you to the 1st Brain-Computer Interface Un-Conference (BCI-UC)! https://bciunconference.univie.ac.at/ The 1st BCI-UC is an entirely virtual event that takes place on July 23rd 2020 from 3 pm to 9:30 pm (CEST). It differs in various ways from traditional conferences in our field: * All presentations are publicly streamed via Crowdcast. * Anybody can apply for a presentation slot by submitting an abstract. All registered attendees can up-vote their favorite abstracts. In this way, the whole community decides which presentations they would like to see presented at the conference. * Voting commences on Monday, June 29th at 8 am (CEST) and ends on Thursday, July 16th at 12 midnight (CEST). The authors of the top-rated abstracts are invited to present their work at the conference. * Registration (free of charge) is required for submitting an abstract and to up-vote submissions. In addition to the contributed talks, the 1st BCI Un-Conference features two keynotes presentations: 1. Mariska J Vansteensel (UMC Utrecht Brain Center): Towards the Daily Life Implementation of ECoG-BCIs 2. Christian Herff (Maastricht University): Decoding Speech from Invasive EEG Please join us in exploring this new way of disseminating research in our community! The BCI-UC Organizing Committee: Moritz Grosse-Wentrup Anja Meunier Philipp Raggam Anita Resch Jiachen Xu -- Univ.-Prof. Dr.-Ing. Moritz Grosse-Wentrup Research Group Neuroinformatics Faculty of Computer Science University of Vienna Hörlgasse 6, A-1090 Wien, Austria moritz.grosse-wentrup(a)univie.ac.at +43-1-4277-79610 http://neural.engineering/

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