- Comp-neuro - lists.cnsorg.org

CNS2017 workshop on "Neuronal Oscillations: mechanisms and functionality"
by Frances Skinner July 14, 2017

July 14, 2017

Please post: Dear all, We invite you to attend our workshop an CNS2017 tthis year. "Neurona*l Oscillations: mechanisms and functionality"* Oscillations at various frequency ranges have been observed in several brain structures (hippocampus, entorhinal cortex, olfactory bulb and others). They are believed to be important for cognitive functions such as learning, memory, navigation and attention. These rhythms have been studied at the single cell level, as the result of the interaction of a neuron’s intrinsic properties, at the network level, as the result of the interaction between the participating neurons and neuronal populations in a given brain region, and at higher levels of organization involving several of these regions. Recent advances in this field have benefited from the interaction between experiment and theory, and models with varying levels of detail. The purpose of this workshop is to bring together modelers, experimentalists and theorists with the goal of sharing and discussing their current results and ideas on the underlying mechanisms that govern the generation of these rhythms at various levels of organization, and their functional implications. An additional goal is to discuss what we mean by an explanation in the context of this workshop. To this end, speakers will be encouraged to address this issue from the perspective of Aristotle's four causes (efficient, material, formal and final causes) <http://plato.stanford.edu/archives/spr2015/entries/aristotle-causality/>. Please see 'What is computational neuroscience? (XVI) What is an explanation?' <http://romainbrette.fr/2013/06/>. Speakers: Day 1: F Skinner, J White, M Bezaire, V Cutsuridis, J Guzman, L Rubchinsky, D Levenstein, F Battaglia, M Bartos, J Mejias Day 2: C. Borgers, C Canavier, M Cunningham, J Lefebvre, A Peyrache, H Rotstein, B Pesaran, A Saudargiene For more details, please visit http://vassiliscutsuridis.com/workshop/CNS2017web.htm Thank you, Frances (on behalf of the organizers) -- Frances Skinner, PhD Krembil Research Institute/UHN and Univ Toronto www.skinnerlab.org

1 0

CNS meeting 2017 workshop on "Recent methods and analyses for neuronal population recordings"
by Valentina Pasquale July 14, 2017

July 14, 2017

Dear all, I would like to remind you about the WORKSHOP "RECENT METHODS AND ANALYSES FOR LARGE-SCALE NEURONAL POPULATION RECORDINGS" | JULY 19TH-20TH IN ANTWERP @ CNS MEETING 2017 http://www.computational-neuroscience-of-sensory-systems.org/workshop-on-re… Abstract: Understanding how assemblies of neurons encode information requires recording large populations of cells in the brain. In recent years, progress in population calcium imaging and multichannel electrophysiology opened the possibility to record from hundreds or even thousands of neurons simultaneously. While these techniques offer unprecedented chances to monitor large neural circuits, they also push for the design of new algorithms to gather and process information from such high-dimensional datasets. The workshop "Recent methods and analyses for large-scale neuronal population recordings", which will be held on July 19th-20th in Antwerp at the CNS meeting 2017, will gather leading experimentalists and theoreticians to discuss latest computational methods and analyses used to process such large-scale neuronal population recordings, both in vivo and in vitro. Focusing on high-density electrophysiology and calcium imaging, it will review recent advances in neuroinformatics research, including spike sorting techniques and characterization of neural assemblies' spatio-temporal activity. Organizers: Valentina Pasquale (IIT), Michela Chiappalone (IIT), Pierre Yger (Institut de la Vision, France) Speakers: July 19th * Matthias Hennig (University of Edinburgh, Scotland) * Felix Franke (ETH Zurich, Switzerland) * Nick Steinmetz (University College London, UK) * Pierre Yger (Institut de la Vision, France) * Thomas Deneux (UNIC, CNRS, France) * Marius Pachitariu (University College London, UK) * Stephen J. Eglen (University of Cambridge, UK) * Adrien Peyrache (McGill University, Canada) July 20th * George Dimitriadis (Sainsbury Welcome Centre, UK) * Gaute Einevoll (NMBU, Norway) * Yannick Bornat (IMS Bordeaux, France) * Ulisse Ferrari (Institut de la Vision, France) * Sonja Grün (Forschungszentrum Jülich, Germany) * Valentina Pasquale (Istituto Italiano di Tecnologia, Italy) * Arno Onken (Istituto Italiano di Tecnologia, Italy) * Paolo Bonifazi (Ikerbasque, Bilbao, Spain) For further information, please visit: http://www.computational-neuroscience-of-sensory-systems.org/workshop-on-re… Best, Valentina Pasquale valentina.pasquale(a)iit.it<mailto:valentina.pasquale@iit.it> ISTITUTO ITALIANO DI TECNOLOGIA Optical Approaches to Brain Function Lab Via Morego, 30 16163 Genova t: +39 010 71781 475 f: +39 010 71781 230 www.iit.it<http://www.iit.it/>

1 0

Open PhD position computational neuroscienceB
by Claudius Gros July 12, 2017

July 12, 2017

I would like to brink your attention our PhD-program in Computational Neurosciences / Complex Dynamical Systems at the Institute of Theoretical Physics, Goethe University Frankfurt, Germany Field(s): computational neurosciences, complex systems, theory neural networks, simulated robotics, dynamical systems. Application deadline: August 11, 2017 Contact: Prof. Claudius Gros, cgr[(a)]itp.uni-frankfurt.de We are developing new models and generative principles for the brain using a range of toolsets from dynamical systems theory and computational neurosciences. Examples are new objective functions and generating functionals for the sensori-motor loop, transient state dynamics and self-limiting Hebbian plasticity rules. Several subjects are available for the announced PhD thesis including the generation of transient state dynamics through short-term synaptic plasticity, the study of the stationarity principle for statistical learning and/or the generation of motor primitives through self-organized embodiment within the sensori-motor loop. The work will include analytic investigations and numerical simulations of neural networks and/or of simulated robots, using the toolset of dynamical systems theory. The candidate must have a Diploma/Master in physics, an excellent academic track record and good computational skills. Experience or strong interest in the fields of complex systems, computational neurosciences, dynamical systems theory and/or artificial or biological cognitive systems is expected. The degree of scientific research experience needs to be on the level of a German Diploma/Master The appointment will start summer/fall 2017, for up to three years. Interested applicants must submit a curriculum vitae, a list of publications and copies of the academic record. Name, affiliation and email of one or more potential references are to be given. Claudius Gros http://www.itp.uni-frankfurt.de/~gros General information on the University of Frankfurt and its employment policy. With its around 46000 students and 4600 employees, the Goethe University in Frankfurt is the largest university in the state of Hessen and an internationally renowned, important regional employer. Numerous quality and performance oriented internal reforms have been initiated in the recent years. The reorganized campuses for natural sciences and humanities offer an ideal environment for research and education. Since 2008, the Goethe University is a foundation under public law and enjoys full administrative autonomy. The fixed-term employment of the academic staff is subject to the provisions of the Temporary Science Employment Law (Wissenschaftszeitvertragsgesetz) and the Hessian Higher Education Act (Hessisches Hochschulgesetz). The University advocates gender equality and therefore strongly encourages women to apply. People with disabilities are given preference if equally qualified. ### ### Prof. Dr. Claudius Gros ### http://itp.uni-frankfurt.de/~gros ### ### Complex and Adaptive Dynamical Systems, A Primer ### A graduate-level textbook, Springer (2008/10/13/15) ### ### Mageia, das Buch der Farben ### http://www.buchderfarben.de ###

1 0

Vice Chancellor's 5-year Research Fellowship in Biocomputation, Mental Health and Wellbeing (University of Hertfordshire, U.K.)
by Steuber, Volker July 12, 2017

July 12, 2017

Research Fellow: Biocomputation, Mental Health and Wellbeing University of Hertfordshire - School of Computer Science Location: Hatfield Salary: £32,004 to £38,183 Grade 7 p.a. Hours: Full Time Contract Type: Fixed-Term/Contract Placed on: 27th June 2017 Closes: 21st August 2017 Job Ref: 014834 FTE 1.0 FTE working 37 hours per week Duration of Contract: Fixed term contract 5 years from October 2017 Qualifications required: Very strong PhD degree in a quantitative research-oriented discipline, examples are computer science, mathematics, physics and neuroscience; excellent programming skills in at least one major computer language (essential), and very strong mathematical background, with particular emphasis on areas such as computer algebra, Krohn-Rhodes algebraic automata theory and language theory, discrete/continuous/constructive dynamical systems theory, group theory, algebraic topology, information theory, probability theory and statistics, and mathematical methods for computational intelligence. Background in computational neuroscience, including processing and analysis of EEG data, especially EEG microstates, is highly desirable. Experience writing high-quality research publications (essential) and grant applications (desirable), as well as excellent communication skills (essential). Successful history of working in multidisciplinary teams (highly desirable). Description of the research activity and area: Algorithms and Biocomputation are growing areas of research excellence at the University of Hertfordshire. This Fellowship targets the development and application of our novel computational and mathematical methods (e.g., automata-, language-theoretic and algebraic methods; computational mechanics and Krohn-Rhodes computational algebraic biology) to biological systems. The Research Fellow will support ongoing and future work characterizing the neurodynamical spatio-temporal structure of human mental states led by Professor Chrystopher L. Nehaniv and external collaborator Dr Elena Antonova (Institute of Psychiatry, Psychology and Neuroscience, King’s College London). Our current BIAL Foundation grant focuses on using EEG microstate ‘grammars’ to distinguish different mental states in expert meditators. EEG microstates are quasi-stable maps of electric potential landscapes of short duration, typically classed in a small number of discrete types analogous to ‘letters’ of an alphabet. The tendency for simple EEG microstate transitions between certain pairs of these discrete types has already been shown to characterize clinical populations (people with schizophrenia or Alzheimer’s vs. healthy controls). Our current research targets finer understanding of richer temporal neurodynamical structure and patterns, using these novel computational methods, toward harnessing their potential eventually for applications in Health and Wellbeing as a diagnostic tool for different clinical populations. The Fellow will reinforce the established collaboration with KCL, supporting validation and development of our methods toward their eventual application in clinical diagnosis and mental illness prevention, as well as in promotion of wellbeing. The Fellow will be expected to publish in high-impact journals and present conference papers together with Professor Nehaniv and Dr Antonova, to contribute to writing grant applications to national and international funding bodies [e.g., Wellcome Trust, EPSRC/BBSRC/MRC, European Commission, and other funding agencies], and contribute to REF outputs of the School of Computer Science. In accord with the CONCORDAT for professional development of researchers, the candidate may be afforded the opportunity to undertake a limited amount of appropriate teaching (upon mutual agreement). The Royal Society / Wolfson Biocomputation Research Laboratory at the University of Hertfordshire has a long history of interdisciplinary innovation in computational methods for systems biology and neural systems, as well as applications of bioinspired-methods to other fields. It enjoys close interdisciplinary links to the Adaptive Systems and Algorithms Research Groups, whose interests include mathematical computer science, compilers, security, networks, artificial Intelligence robotics, artificial life, language acquisition, human-robot interaction, etc., and have labs equipped with humanoid and non-humanoid robots, as well as 3D printing facilities. External research connections to UK, European and international partners (e.g. University of California, Berkeley; Univ. Debrecen and Renyi Institute, Hungary; Sardex, Italy; etc) are supported through numerous research council and EC-funded collaborations and projects. Skills and experience needed: The Fellow will have established him/herself as an independent researcher, capable of establishing a programme of research activity within the scope of the project. S/he will have excellent oral and written communication skills in both spoken and written English and a track record of publications in high impact journals. The Fellow will be expected to build capacity in the area of Biocomputation and participate in attracting external funding, previous success being a desirable attribute. S/he should be able to establish good working relationships, and work closely with members of the Centre for Computer Science and Informatics Research and the School of Computer Science, at the University of Hertfordshire and with partner organisations as appropriate. The fellow should have knowledge of research methodology appropriate for the subject area and knowledge of appropriate databases for the discipline and ability to conduct literature searches in the discipline using appropriate electronic resources. Contact Details: Informal enquiries can be made to Professor Chrystopher L. Nehaniv, email: C.L.Nehaniv(a)herts.ac.uk<mailto:C.L.Nehaniv@herts.ac.uk> tel: +44 1707 284470<tel:01707%20284470> The University offers a range of benefits including a pension scheme, professional development, family friendly policies, child care vouchers, a fee waiver of 50% for all children of staff under the age of 21 at the start of the course, discounted memberships at the Hertfordshire Sports Village and generous annual leave. To make a formal application, follow links and apply on-line: http://www.jobs.ac.uk/job/BCH822/research-fellow-biocomputation-mental-heal…

1 0

Postdoc Position: Learning Dynamics in Recurrent Networks
by Shouval, Harel July 11, 2017

July 11, 2017

A postdoc position is available in the Shouval lab. The Postdoc will work on a project funded by the BRAIN grant: “Learning spatio-temporal statistics from the environment in recurrent networks”. In this project we will model both recurrent network models, and also the learning rules that allow them to learn their dynamics from environmental cues. This project is a collaboration between the lab of Harel Shouval at the University of Texas in Houston, and the lab of Nicolas Brunel at Duke. This is a two-year position and it can start immediately. The Shouval lab is a leader in developing models of synaptic plasticity and understanding their impact on learning and memory. The models we develop span from the molecular level and up to the systems level. In our some of our recent work we study the impact of synaptic plasticity on recurrent network dynamics and on incorporating reinforcement learning into biophysical plasticity models. We use both computational and analytical techniques to study these issues. The Shouval lab is located in the department of Neurobiology and Anatomy, in the UT medical school. Houston has a thriving Neuroscience community and it is an excellent environment for Theoretical and Computational Neuroscience. There is a high concentration of Theoretical Neuroscience labs at the different Houston area Universities (Baylor, Rice, UH, UT). Our Theoretical Neuroscience community is highly collaborative and there is a joint organization to foster these collaborations; the Gulf Coast Consortium in Theoretical and Computational Neuroscience (GCC-TCN). We hold an annual conference, joint graduate courses and a journal club. The ideal candidate will have a PhD in Computational Neuroscience with strong analytical and computational skills. I will also consider candidates with a background in the Physical or Computational Sciences who would like to become a Theoretical Neuroscientists. If you want to apply please send me your CV, and a brief cover letter that includes names of possible references. I will also be happy to answer any question you might have about the project or the position. Harel Shouval Professor Department of Neurobiology and Anatomy The University of Texas Medical School, Houston Director of the Neuroscience Graduate program Email: harel.shouval(a)gmail.com<mailto:harel.shouval@gmail.com> Web: https://med.uth.edu/nba/faculty/harel-shouval/

1 0

POSTDOCTORAL FELLOWSHIP IN COMPUTATIONAL MODELING OF BRAIN NETWORKS at Stanford University
by Aarthi Padmanabhan July 11, 2017

July 11, 2017

The Stanford Cognitive and Systems Neuroscience Laboratory invites applications for a postdoctoral fellowship in human brain network analysis and modeling. We seek candidates with strong research backgrounds in one or more of the following areas: resting-state and task-evoked fMRI connectivity, structural HARDI-based connectivity, neurophysiological modeling of brain networks, Bayesian modeling, machine learning, and deep neural networks. Candidates must have strong computational skills and a PhD in computational neuroscience, computer science, physics, biomedical engineering or related fields. This is an exciting opportunity to work on multiple NIH- and Stanford-funded projects using multimodal (fMRI, optogenetic, DTI, EEG) brain imaging techniques in multiple clinical populations and normative groups. The successful candidate will develop a vigorous research program that contributes to, and complements, ongoing research studies. The candidate will have access to state-of-the-art brain imaging and HPC/GPU facilities. Please email a CV, statement of research interests and relevant background, and names of three referees to Drs. Vinod Menon and Aarthi Padmanabhan at scsnl.stanford+postdoc(a)gmail.com<mailto:scsnl.stanford@gmail.com> Aarthi Padmanabhan, PhD Scientific Research Director Stanford Cognitive and Systems Neuroscience Laboratory Department of Psychiatry and Behavioral Sciences Stanford University School of Medicine

1 0

Neuroscience Gateway Workshop at SFN 2017 meeting
by Ted Carnevale July 11, 2017

July 11, 2017

Using the Neuroscience Gateway Portal for Parallel Simulations Saturday, Nov. 11 from 9 AM to noon at downtown Washington DC location. This workshop combines didactic presentations and hands-on instruction on how to use the Neuroscience Gateway Portal (NSG) for computationally intensive simulations and data analysis. NSG eliminates most technical and adminstrative barriers to using high performance computing resources, and even gives away free CPU time on parallel supercomputers. Software currently installed on NSG includes BluePyOpt, Brian, CARLsim, Freesurfer, GENESIS, MATLAB, MOOSE, NEST, NEURON, PyNN, and the Virtual Personalized Multimodal Connectome Pipeline. The registration deadline for this workshop is Friday Oct. 27, but you should sign up early because space is limited. See https://www.neuron.yale.edu/neuron/static/courses/nsg2017/nsg2017.html for more information and a link to the registration form. --Ted

1 0

NEURON course at SFN 2017 meeting
by Ted Carnevale July 11, 2017

July 11, 2017

Using NEURON to Model Cells and Networks Friday, Nov. 10 from 9 AM to 5 PM at a downtown Washington DC location. This course provides a practical introduction to building and using models of neurons and networks with NEURON. Covered topics include basic concepts, workflow for building and using models, speeding up simulations with parallel hardware from multicore personal computers to massively parallel supercomputers, using Python with NEURON, and modeling reactive diffusion with the RxD class. The registration deadline for this course is Friday Oct. 27, but you should sign up early because space is limited. See http://www.neuron.yale.edu/neuron/static/courses/dc2017/dc2017.html for more information and a link to the registration form. --Ted

1 0

Announcing the workshop on cloud-based BCIs at the BCI Conference 2017
by Vinay Jayaram July 11, 2017

July 11, 2017

Dear all, We are happy to announce to potential attendees of the 7th BCI Conference in September 2017 that Workshop 1 (Cloud-based BCIs: challenges and opportunities of home-use systems for big data collection) is now calling for abstracts about work on BCIs for home use. This workshop is intended to bring together the various subfields of the BCI community to focus on some of the most pressing issues in the field: Robust machine learning with large datasets, low-cost and robust hardware, and applications for use without expert assistance. We are also happy to confirm Dr. Tim Mullen (Qusp Neurotechnologies) and Prof. Brian Murphy (BrainWaveBank) as keynote speakers for our workshop. More information and the workshop schedule can be found here https://webdav.tuebingen.mpg.de/graz2017/. Interested parties are invited to submit a 200-word abstract about the work they would like to present either via the website or to cloudbci(a)tuebingen.mpg.de by 4 August. Looking forwards to seeing you in Graz, Vinay Jayaram -- Vinay Jayaram PhD Student Max Planck Institute for Intelligent Systems Spemannstrasse 34, 72076 Tübingen, Germany

1 0

Two PI positions in Cognitive Neuroscience, University of Trento, Italy
by moritzwurm July 11, 2017

July 11, 2017

Call for Expression of Interest for two Assistant Professor positions. More senior candidates will also be considered. *Cognitive Neuroimaging Principal Investigator, University of Trento, Neuroimaging Labs (LNiF), Center for Mind-Brain Sciences (CIMeC), Trento, Italy* The Center for Mind-Brain Sciences (CIMeC) at the University of Trento, Italy, invites expressions of interest from highly motivated scholars in view of the opening of two principal investigator positions at the level of assistant professor (3 years + potential 2 year extension). Candidates who have already a tenured position elsewhere would be considered directly for a tenure-track assistant professor/tenured associate professor. /Research Profile/ The ideal candidate should have an established track record of _research in any area of cognitive neuroimaging studies, preferably fMRI_. The successful candidates will work in the Neuroimaging Labs (LNiF: http://www.cimec.unitn.it/en/69/neuroimaging-labs-lnif) at the Center for Mind-Brain Sciences (CIMeC: http://web.unitn.it/en/cimec) They are expected to develop their own research program but also to interact actively with other CIMeC faculty using different methodologies to address various aspects of cognitive functioning. Knowledge of Italian is appreciated but not required. /Teaching/ The successful candidates are expected to contribute to the Center’s teaching mission at the PhD and MSc level. Instruction is in English. Successful candidates will negotiate the possibility of supervising PhD students who are fully funded by the University. The teaching duties at the MSc level vary depending on academic rank. Assistant professors are expected to teach 60 hrs/year, tenure-track assistant professors 90 hrs/year, tenured associate professors 120 hrs/year. UniTN and CIMeC The University of Trento consistently ranks as a top Italian university in both national Research Assessment Evaluations (RAE) and University Surveys.In the latest RAE the University of Trento as a whole ranks 1st among medium-sized universities. The CIMeC's goal is to foster cutting-edge research on cognition and its neural basis, and to support the dissemination of these findings internationally and within the local community. As an interdisciplinary research and teaching center, it draws on faculty from several departments, including Psychology and Cognitive Science, Linguistics and Philosophy, Physics, Mathematics, and Information Engineering and Computer Science. Current faculty members come from Italy, Germany, The Netherlands, Belgium, USA, Canada, Argentina, Israel, and the United Kingdom. Although a relatively small group, CIMeC faculty have won many competitive national and international grants, including 1 European Research Council (ERC) advanced grant, 1 ERC consolidator grant, 6 ERC starting grants, other European Framework grants, and highly competitive grants awarded by the local government. The Center has consistently been ranked the leading cognitive neuroscience research unit in Italy. It is part of the Erasmus Mundus European Master Program in Language and Communication Technologies. Expressions of interest in English should include a brief motivation letter and a Curriculum Vitae and should be addressed to Dr. Alfonso Caramazza (alfonso.caramazza(a)unitn.it) <mailto:alfonso.caramazza@unitn.it%29>, who chairs a committee that includes Drs. Mel Goodale and Alex Martin.

1 0