- Comp-neuro - lists.cnsorg.org

INCF IC preprint: Recommendations for repositories and scientific gateways from a neuroscience perspective
by Heather Topple 14 Jan '22

14 Jan '22

The INCF Infrastructure Committee (IC) - which provides recommendations for the strategic direction of INCF's infrastructure strategy and development - has a preprint available in arXiv. The preprint, titled *Recommendations for repositories and scientific gateways from a neuroscience perspective*, is a set of recommendations that can apply to a wide and diverse range of digital services, both repositories and science gateways, for data as well as software. These recommendations have neurosciences as their primary use case but are often general. Congratulations to authors and members Malin Sandström, Mathew Abrams, Jan Bjaalie, Mona Hicks, David Kennedy, Arvind Kumar, JB Poline, Prasun Roy, Paul Tiesinga, Thomas Wachtler, and Wojtek Goscinski! Learn more about it here: http://bit.ly/INCFICpreprintblog Read the paper here: bit.ly/INCFICpreprintarXiv Please feel free to forward this email to anyone in your network you feel would be interested. All the best, /Heather ---------------------------- Heather Topple, BSc *Project Assistant* *Development and Communications* International Neuroinformatics Coordinating Facility Secretariat Karolinska Institutet. Nobels väg 15A, SE-171 77 Stockholm. Sweden <https://www.google.com/maps/search/Nobels+v%C3%A4g+15A,+SE-171+77+Stockholm…> Email: heather(a)incf.org Phone: +46 085 248 70 65 incf.org neuroinformatics.incf.org

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Working group publication: Active Segmentation for ImageJ
by Heather Topple 13 Jan '22

13 Jan '22

INCF's Active Segmentation for ImageJ working group - including GSOC students - has just published a paper in Brain Sciences as part of a special issue on neuroinformatics and signal processing. Congratulations to mentors Dimiter Prodanov & Sumit Vohra, and GSOC students Mukesh Gupta, Sanjeev Dubay, Joanna Stachera, Raghavendra Singh Chauhan, & Piyumal Demotte! Learn more about it here: bit.ly/INCFwgActiveSegblog Read the paper here: bit.ly/ActiveSegmentationpaper Please feel free to forward this email to anyone in your network you feel would be interested. All the best, ---------------------------- The INCF Secretariat International Neuroinformatics Coordinating Facility Secretariat Karolinska Institutet. Nobels väg 15A, SE-171 77 Stockholm. Sweden <https://www.google.com/maps/search/Nobels+v%C3%A4g+15A,+SE-171+77+Stockholm…> Phone: +46 085 248 70 65 incf.org neuroinformatics.incf.org

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Shanahan Foundation Fellowship at the Interface of Data and Neuroscience - apply now!
by Eric Shea-Brown 12 Jan '22

12 Jan '22

Overview The Shanahan Foundation Fellowship at the Interface of Data and Neuroscience is a three-year fellowship program that aims to: · Integrate data scientists in neuroscience research · Challenge traditional approaches to neuroscience · Provide multidisciplinary, multi-organizational co-mentorship · Provide a network and community · Support career development in data science The fellowship is co-hosted by the Allen Institute and the University of Washington (through the eScience Institute and the Computational Neuroscience Center) and is directed by Dr. Christof Koch at the Allen Institute. Neuroscience needs data scientists. The brain represents one of the most complex challenges facing science today. And now with advances in our methods to study the brain—Neuropixel probes that can record from 1000 neurons at once, growing consensus on data standards across laboratories—the field is flooded with data that needs interpretation. The skills of data scientists are essential to springboard the field to the next stage of discoveries. Towards that end, the Shanahan Foundation Fellowship was created to bring fresh perspectives into the field, encouraging data scientists from outside neuroscience to come and work with leading investigators at the Allen Institute and UW. The Allen Institute is unique in its infrastructure and pipeline that enables the production of standardized, reproducible data on the brain (as evidenced by our vast data banks <http://www.brain-map.org/>). Together with our collaborators at the UW computational Neuroscience Center and eScience Institute, we provide data scientists with the ideal opportunity and resources to mine for novel insights and discoveries. Details You do not need experience in neuroscience to apply. The goal of the fellowship is to provide opportunities to non-traditional applicants who would not typically be funded by the typical postdoctoral fellowships in neuroscience. The fellowship has been purposefully designed to give fellows the time and mentorship to get up to speed in a new field and new data collection techniques and methods. Fellows will be employed by the Allen Institute as either a Scientist I or a Scientist II (with a matching salary) and will receive an affiliate postdoctoral appointment at UW. During the three-year fellowship, fellows will identify a mentor at the Allen Institute, where the fellows will be based. Fellows will select a co-mentor at the University of Washington who will provide additional guidance on a project designed by the fellow, focused on quantitative analysis of neuroscience data available through the Allen Institute’s vast data banks <http://www.brain-map.org/> – ranging from molecular, genomic, transcriptional, physiological, morphological, anatomical and functional whole-brain level in the brains of mice, non-human primates and humans – or through ongoing laboratory work. Each fellow will have the opportunity to mentor a fully-funded UW undergraduate or postbaccalaureate research assistant who helps with their research for 3-12 months. Fellows will participate in the postdoctoral career development program at the University’s e-Science Institute and the UW Computational Neuroscience Center. The eSciences Institute offers regular workshops on key topics including cloud computing, python and reproducibility. New fellows will attend the annual Summer Workshop on the Dynamic Brain <https://alleninstitute.org/what-we-do/brain-science/events-training/summer-…> where they will learn how to apply data science skills to neuroscience data and questions. Throughout the three years, fellows will be supported in developing a network in the neuroscience field and sharing their progress with peers at conferences. Up to three fellows will be selected to begin in Fall 2022. Eligibility Requirements Applicants must be data scientists in a broad sense, with a Ph.D. in a quantitative field such as computer science, statistics, electrical engineering, physics, mathematics or biology with a background in statistical, computational and machine learning methods. Ph.D.’s should have been awarded in the last 3 years. One goal of the fellowship is to build a network of collaborators, as such, priority will be given to applicants who are not currently postdoctoral fellows or scientists at the University of Washington or the Allen Institute. We believe high-quality science can only be produced when it includes different perspectives. We are building an environment of diversity and inclusion and encourage people from all backgrounds to apply for this fellowship. Application Instructions For full consideration, please submit your application by February 1, 2022. Applications may continue to be considered after this deadline on a rolling basis until positions are filled. Learn more and apply on the Shanahan Fellowship Website <https://alleninstitute.org/what-we-do/brain-science/careers/shanahan-founda…>. https://alleninstitute.org/what-we-do/brain-science/careers/shanahan-founda… <https://alleninstitute.org/what-we-do/brain-science/careers/shanahan-founda…> Applications must include: · A curriculum vitae from the applicant · Two letters of support from advisors and other mentors · A one-page personal statement from the applicant describing their history, activities, and interests as an individual (especially those outside of science) which may give the committee a greater sense of you as a person and your ability to simultaneously interact with and challenge traditional scientific fields. · A two- to three-page research statement from the applicant describing their prior research, interests in applying data science to the field of neuroscience, potential research interests (including tools they are familiar with) and how this fellowship aligns with their career goals. · The choice of the final advisor/co-advisor will be accomplished during the first year of this fellowship. Questions? Email: shanahan.fellow(a)alleninstitute.org <mailto:shanahan.fellow@alleninstitute.org>

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Summer workshop on the dynamic brain -- apply now!
by Eric Shea-Brown 12 Jan '22

12 Jan '22

Applications are now open for the 2022 Summer Workshop on the Dynamic Brain. Founded by Adrienne Fairhall and Christof Koch, this annual two-week course is co-hosted by the Allen Institute MindScope Program and the Computational Neuroscience Center at the University of Washington. The Summer Workshop on the Dynamic Brain is an intensive, project-based residential course with a focus on the neurobiology of sensory processing, coding, and neural population dynamics. This program is intended for researchers at the graduate and postdoctoral level with an interest in developing the intersection of their scientific knowledge and their computational skills. Learn more and apply at https://alleninstitute.org/what-we-do/brain-science/events-training/summer-… Applications are due Feburary 1, 2022. Please contact dynamicbrain(a)alleninstitute.org with any questions.

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Women in Memory Research - Workshop - March 7-9, 2022
by Vinita Samarasinghe 11 Jan '22

11 Jan '22

In conjunction with International Women's Day the FOR 2812 is organising its first “*Women in Memory Research*” event from *March 7-9, 2022.* The percentage of senior female university researchers in our field (in Germany) lies between 21% and 29%. Our goal is to increase these numbers! So come and learn what an academic career looks like at the Ruhr University Bochum and discover its advantages. You'll be introduced to the university and it's support structures, be able to participate in university wide programs, meet with female faculty, listen to some amazing scientific talks, present your research, and see what collaborative research looks like in the RUB memory research community. Sounds exciting? *Who can apply:*Female master’s students in their final year of study and recently graduated master’s students who are looking into an academic career in the area of memory research/neuroscience. Applicants must have excellent grades and be able to communicate in English. Selection of participants is competitive. We only have space for 12 participants! *How to apply:*Send your application including a one page letter of motivation, a current CV, master’s transcripts and a letter of recommendation from one of your professors. Your application should be sent, as a single PDF document, to Vinita Samarasinghe @for2812@rub.deby January 23, 2022. If you need child care or any other support please note this in your application. *What to expect:*We will provide accommodation and cover travel costs of up to 500 Euro (some meals are included). The program will be offered in English; however, certain programs offered by the Ruhr University in conjunction with International Women's Day may be only available in German. You will be asked to present your current research in the form of a poster. *Contact:*Vinita Samarasinghe,for2812(a)rub.de, Tel: +49 234 32 27996, https://for2812.rub.de -- Vinita Samarasinghe M.Sc., M.A. Science Manager Arbeitsgruppe Computational Neuroscience Institut für Neuroinformatik Ruhr-Universität Bochum, NB 3/73 Postfachnummer 110 Universitätstr. 150 44801 Bochum Tel: +49 (0) 234 32 27996 Email:samarasinghe@ini.rub.de

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postdoctoral position in the Canavier lab
by Canavier, Carmen C. 10 Jan '22

10 Jan '22

A postdoctoral position will become available in the very near future in the Canavier computational neuroscience lab at LSU Health Science Center in New Orleans, Louisiana. Our lab focuses on modeling single neurons and networks in a synergistic loop with experimental collaborators Jochen Roeper, John White and Sonia Gasparini. We are interested in how oscillations are generated and how networks synchronize, and in how the intrinsic properties of neurons contribute to how they integrate their inputs. A quantitative background in electrical engineering, physics, mathematics, computer science or a related field coupled with a passion for applying quantitative techniques and theory to neuroscience is required. We are primarily interested in 1) theta and gamma oscillations in the hippocampus and 2) in the dopamine neurons of the basal ganglia. Please contact Dr. Canavier at ccanav(a)lsuhsc.edu<mailto:ccanav@lsuhsc.edu> for more information.

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EARLY CAREER SCIENTIST GRANT OPPORTUNITIES- Open January 2022
by Laura Long 10 Jan '22

10 Jan '22

The Simons Foundation is invested in supporting the next generation of researchers. Our Independence Awards programs promote talented early-career scientists by facilitating their transition to research independence and providing grant funding at the start of their professorships. We are offering such awards through three of our programs: the Simons Foundation Autism Research Initiative (SFARI), the Simons Collaboration on the Global Brain (SCGB) and the Simons Collaboration on Plasticity and the Aging Brain (SCPAB). These requests for applications (RFAs) are aimed at Ph.D. and M.D. – holding scientists who are currently in training positions and intend to seek tenure-track faculty positions over the next two years (i.e., 2022-2024). Successful applicants will receive a commitment of $495,000 over three years, activated upon assumption of a tenure-track professorship. Visit bit.ly/3yqWILX for more information on all three programs.

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Summer Undergraduate Computational Neuroscience Apprenticeship
by Neymotin, Samuel (NKI) 05 Jan '22

05 Jan '22

Several Army Research Office (ARO) undergraduate research apprenticeship program (URAP) positions are available for the summer of 2022 at the Nathan Kline Institute for Psychiatric Research (https://www.nki.rfmh.org/) Research will be conducted to help achieve the goals of an ARO grant that aims to train neocortical circuit models to play video games using biologically-plausible learning rules, and to compare model performance against commonly used deep reinforcement learning algorithms. Students will have the opportunity to learn cutting edge methods in computational neuroscience, machine learning, and Python software development, and publish their results. Several manuscripts under review, that included previous URAP students are available on Biorxiv here: https://www.biorxiv.org/content/10.1101/2021.07.29.454361v1 https://www.biorxiv.org/content/10.1101/2021.11.20.469405v1 Candidates will be considered based on their experience in computational neuroscience, machine learning, and Python programming. Candidates in the NYC metropolitan area will be preferred. Apply at https://www.usaeop.com/program/undergraduate-apprenticeships/ Make sure to use code U803 (Nathan Kline Institute) and apply by the deadline (February 28, 2022). Letters of recommendation are optional. For questions, email Samuel.Neymotin(a)nki.rfmh.org ________________________________ IMPORTANT NOTICE: This e-mail is meant only for the use of the intended recipient. It may contain confidential information which is legally privileged or otherwise protected by law. If you received this e-mail in error or from someone who was not authorized to send it to you, you are strictly prohibited from reviewing, using, disseminating, distributing or copying the e-mail. PLEASE NOTIFY US IMMEDIATELY OF THE ERROR BY RETURN E-MAIL AND DELETE THIS MESSAGE FROM YOUR SYSTEM. Thank you for your cooperation.

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postdoc position involving psychophysics and fMRI to study visual consciousness
by Brascamp, Jan 04 Jan '22

04 Jan '22

The Brascamp Lab for Visual Neuroscience at Michigan State University is seeking a Research Associate (postdoc). The Research Associate will be researching the neural basis of conscious vision, as part of a multi-site project funded by the Templeton World Charity Foundation and performed at Michigan State University in collaboration with researchers at NYU, UC Irvine, and Boston University (shorturl.at/ackpE<http://shorturl.at/ackpE>). The work involves visual psychophysics and functional neuroimaging. The Brascamp Lab is located within the Department of Psychology and is a part of the Department's Cognition and Cognitive Neuroscience group, which provides an excellent research and training environment with faculty expertise covering a broad range of topics in perception and cognitive psychology. The Research Associate will be stationed at MSU, and the project may require a limited time spent in Amsterdam, the Netherlands, for data acquisition. This is initially a one-year position with the possibility of extension. Minimum Requirements include a Ph.D. in vision science, cognitive psychology, neuroscience, or a related field. Applicants should have a strong publication record, experience with psychophysics and/or human neuroimaging, strong programming skills (Python or related language(s)), and strong statistical training. Desired Qualifications: the ideal candidate will have excellent interpersonal and communication skills, and the ability to work independently. Please send inquiries or application materials (a letter of interest, CV, and contact information of three references) to brascamp(a)msu.edu<mailto:brascamp@msu.edu>. Review of applications will begin immediately.

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Fully funded PhD studentship in computational modelling of decision uncertainty available
by Wong-Lin, Kongfatt 04 Jan '22

04 Jan '22

Applications are invited for a fully funded 3-year Ph.D. studentship in: "Emergent Computation of Decision Uncertainty Monitoring, Awareness and Learning", at Ulster University, UK. This PhD project aims to model and understand decision uncertainty monitoring computation using recurrent neural networks with "self-awareness", and to develop novel neuro-inspired AI algorithms. For more information, please refer to: https://www.ulster.ac.uk/doctoralcollege/find-a-phd/1044166 The application process for the Ph.D. studentship is opened with a closing date for applications on the 7th February 2022. Anyone (UK or international applicant) who wishes to discuss about the Ph.D. studentship application or enquire more about this Ph.D. project should contact: Dr. KongFatt Wong-Lin (e-mail: k.wong-lin(a)ulster.ac.uk) Reader Intelligent Systems Research Centre, School of Computing, Engineering & Intelligent Systems, Ulster University, UK https://www.ulster.ac.uk/staff/k-wong-lin This email and any attachments are confidential and intended solely for the use of the addressee and may contain information which is covered by legal, professional or other privilege. If you have received this email in error please notify the system manager at postmaster(a)ulster.ac.uk and delete this email immediately. Any views or opinions expressed are solely those of the author and do not necessarily represent those of Ulster University. The University's computer systems may be monitored and communications carried out on them may be recorded to secure the effective operation of the system and for other lawful purposes. Ulster University does not guarantee that this email or any attachments are free from viruses or 100% secure. Unless expressly stated in the body of a separate attachment, the text of email is not intended to form a binding contract. Correspondence to and from the University may be subject to requests for disclosure by 3rd parties under relevant legislation. The Ulster University was founded by Royal Charter in 1984 and is registered with company number RC000726 and VAT registered number GB672390524.The primary contact address for Ulster University in Northern Ireland is Cromore Road, Coleraine, Co. Londonderry BT52 1SA

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