- Comp-neuro - lists.cnsorg.org

Seeking group leaders in computational neuroscience
by Daniel Choquet Jan. 7, 2019

Jan. 7, 2019

Dear colleague, I would like to seek your help in identifying outstanding candidates for our ongoing call for group leaders in our Neuroscience department. Please note our special emphasis in seeking group leaders in computational neuroscience. Could you please circulate this add ? I thank you in advance for your help and wish you a very happy and fruitful year 2019 Best wishes Daniel Choquet Director of the BRAIN cluster of excellence Group Leader Position in Neuroscience, Bordeaux, France Neuroscience in Bordeaux, France, has grown over the last 10 years to become one of the largest scientific communities in the field of Neuroscience in Europe. Encompassing a total of 650 international scientists organized in 6 main independent research centers, 10 core facilities and the Bordeaux School of Neuroscience, the neuroscience in Bordeaux, France, constitutes an exciting international environment with worldwide recognition in the fields of addiction, brain imaging, synapse biology, memory and dementia, sleep, attention and cognition, movement disorders, pain and sensory functions, pathophysiology of brain development, nutrition and neuro-inflammation. We are seeking to recruit new Group Leaders at junior or midcareer level. We offer attractive start-up packages and state-of-the-art laboratories and infrastructures to young group leaders, typically as a first independent position specialised in non-human primate (patho)physiology of neurodegenerative diseases (e.g. Alzheimer Disease & Parkinson Disease), or in chemical biology, biosensors, structural biology, physical chemistry of molecular assemblies, cell biology and synapse physiology, modelling from molecular and cellular mechanism to neural circuits, all for neuroscience applications. Two major site grants enable to position Bordeaux Neurocampus as a foremost center to meet the challenges of brain research. The Neurocampus project, fully supported by the University of Bordeaux, CNRS, INSERM and the Aquitaine Regional Government, consists into the extension of Neurocentre Magendie (+ 8 000 m2) and of the construction of a 12 000m2 new building which hosts laboratories, animal facilities and the Bordeaux Imaging Center. It also supports the installation of new international research teams, start-up companies and medical patients' association. We expect candidates to develop a competitive, independent research program in his/her respective field, local collaboration and integration into the Bordeaux neuroscience community. Applicants should hold a PhD or MD/PhD degree, with a record of outstanding training and exceptional research potential. Applications from abroad are expressly welcome. We strive to increase the proportion of female staff and expressly encourages qualified women to apply. Interested candidates should submit : <http://bit.ly/neurocampus-application> http://bit.ly/neurocampus-application -a complete CV, - a description of research interests (achievements and projects, max 5 pages), - Name and contact of three references who will be independently asked to provide support letters The deadline for applications is February 28th, 2019. Preselection of the candidates will occur in spring before onsite interview in June 2019. For additional information, please contact <mailto:applicants-neurocampus@u-bordeaux.fr> : applicants-neurocampus(a)u-bordeaux.fr

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PhD level - international fellowship
by Vinita Samarasinghe Jan. 7, 2019

Jan. 7, 2019

Prof. Sen Cheng, Institute for Neural Computation at the *Ruhr University Bochum* in Germany, invites applicants for an International Student Fellowship to be awarded through the international research training group “Integration and Representation of Sensory Processes” (SFB 874). The fellowship has a duration of 4 months, after which it could be extended to a *3 year **PhD position* if a good fit with the group is observed. The work will focus on studying the interaction between neocortex and hippocampus using spiking neural network models. The position is part of the project "Theory of the interplay between sensory cortices and hippocampus in memory formation and retrieval", which is funded by the German Research Foundation as part of the collaborative research center SFB 874. The appointment will be initially from 01.03.2019-30.06.2019. Candidates should have an excellent university degree in neuroscience, physics, mathematics, engineering or a related field and be eligible to enroll in a relevant PhD program at the Ruhr University. Competence in mathematical modeling and excellent programming skillsare mandatory. Familiarity with computational neuroscience or computational cognitive modeling would be a further asset. Only candidates who have not previously lived in Germany will be considered. For further information regarding the IRTG fellowship please visit https://www.ruhr-uni-bochum.de/sfb874/integrated_research_training_group/fe… The Ruhr University Bochum is home to a vibrant research community in neuroscience and cognitive science. The Institute for Neural Computation is an independent research unit and combines different areas of expertise ranging from experimental and theoretical neuroscience to machine learning and robotics. For further information see www.rub.de/cns <http://www.rub.de/cns>. To apply please send a statement of your motivation and research interests, academic transcripts, and a complete CV to samarasinghe(a)ini.rub.de <mailto:samarasinghe@ini.rub.de> in a single PDF file. Please, also request from at least two academic referees that they send letters of reference directly to the same email address. The deadline for applications is 15.01.2019. The Ruhr University Bochum is committed to equal opportunity. We strongly encourage applications from qualified women and persons with disabilities. -- Vinita Samarasinghe M.Sc., M.A. Science Manager Arbeitsgruppe Computational Neuroscience Institut für Neuroinformatik Ruhr-Universität Bochum, NB 3/26 Universitätstr. 150 D-44801 Bochum Tel: +49 (0)234 32 27316 Email: samarasinghe(a)ini.rub.de Hours: Mon. - Fri. 8-11

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Okinawa/OIST Computational Neuroscience Course 2019: Apply now
by Erik De Schutter Jan. 7, 2019

Jan. 7, 2019

OKINAWA/OIST COMPUTATIONAL NEUROSCIENCE COURSE 2019 Methods, Neurons, Networks and Behaviors June 24 to July 11, 2019 Okinawa Institute of Science and Technology Graduate University, Japan https://groups.oist.jp/ocnc The aim of the Okinawa/OIST Computational Neuroscience Course is to provide opportunities for young researchers with theoretical backgrounds to learn the latest advances in neuroscience, and for those with experimental backgrounds to have hands-on experience in computational modeling. We invite graduate students and postgraduate researchers to participate in the course, held from June 24th through July 11th, 2019 at an oceanfront seminar house of the Okinawa Institute of Science and Technology Graduate University. Applications are through the course web page (https://groups.oist.jp/ocnc) only; January 1 - February 2, 2019. Applicants will receive confirmation of acceptance in March. Like in preceding years, the 16th OCNC will be a comprehensive three-week course covering single neurons, networks, and behaviors with ample time for student projects. The first week will focus exclusively on methods with hands-on tutorials during the afternoons, while the second and third weeks will have lectures by international experts. The course has a strong hands-on component based on student proposed modeling or data analysis projects, which are further refined with the help of a dedicated tutor. Applicants are required to propose their project at the time of application. There is no tuition fee. The sponsor will provide lodging and meals during the course and provides partial travel support. We hope that this course will be a good opportunity for theoretical and experimental neuroscientists to meet each other and to explore the attractive nature and culture of Okinawa, the southernmost island prefecture of Japan. Invited faculty: • Claudia Clopath (Imperial College, UK) • Erik De Schutter (OIST) • Kenji Doya (OIST) • Tomoki Fukai (OIST) • Wenbiao Gan (New York University, USA) • Geoff Goodhill (University of Queensland, Australia) • Jun Izawa (Tsukuba University, Japan) • Mike Hausser (University College London, UK) • Bernd Kuhn (OIST) • Eve Marder (Brandeis University, USA) • Peggy Series (University of Edinburgh, UK) • Greg Stephens (OIST) • Taro Toyoizumi (RIKEN BSI, Japan) • Yoko Yazaki-Sugiyama (OIST) • Yi Zeng (Chinese Academy of Sciences, China)

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Research tech/postdoc position in computational neuroscience (Washington U in St. Louis)
by Carlos R. Ponce Jan. 6, 2019

Jan. 6, 2019

Position available: Computational specialist for neuroscience research (research tech or postdoc) Washington University in St. Louis, Missouri Our laboratory conducts visual neuroscience research using electrophysiology and artificial neural networks. We are looking for candidates with experience in Python and C++, and with interest in deep learning approaches. The ideal candidate will help implement third-party software, working closely with biologists in designing and/or performing experiments. Salary based on experience. Requirements: strong interest in visual neuroscience. Minimum Bachelor’s degree in scientific field, computer science and/or engineering. Experience with Python/C++ programming (Linux/Windows). Preferred but not required: Familiarity with data analysis and statistics,Matlab, coding high-performance computing software (including container technology), optimizing parallelized and GPU-based code. Please send application materials to Carlos R. Ponce (crponce(a)wustl.edu , poncelab.org) including CV with cover letter, and contact information for 2-3 references. If a recent graduate, please send transcripts. Peer-reviewed journal or conference publications a plus.

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Postdoc position jointly at UCSD/CMU (Coleman/Grover labs).
by Pulkit Grover Jan. 6, 2019

Jan. 6, 2019

Postdoctoral position in Coleman lab at UCSD and Grover lab at CMU in theory and data analysis: modeling, monitoring, and modulating the enteric nervous system A postdoc position at the intersection of theoretical and computational neuroscience is available working jointly with the labs of Todd Coleman at UC San Diego and Pulkit Grover at Carnegie Mellon University (Pittsburgh, PA). The team's goal is to develop advanced theoretical techniques, closely with validation in realistic computational models, for noninvasive detection, tracking, and modulation of neural activity of the enteric nervous system. The role of the postdoc will be to lead computational modeling, simulations, and data analysis for these systems. The postdoc will collaborate with information theorists, experimentalists, and clinicians. The postdoc will be based in UCSD, and is expected to travel a few times between UCSD and CMU to learn from the existing approaches and coordinate efforts of the two teams. This is an opportunity to work on a challenging and applicable scientific problem in a highly interdisciplinary and vibrant environment. Requirements: PhD in a related discipline (Engineering, Computer Science, Neuroscience, or Biomedical Engineering) with a strong theoretical and computational record. Background in basic cellular neurophysiology is recommended but not mandatory. The labs are committed to the professional development of the members, making this position a valuable preparation for those interested in academic, industrial or entrepreneurial careers. The position has no mandatory teaching or administrative duties. The ideal start date is Mar 2019, but early applications will also be accepted. The position is initially for 12 months with the possibility of renewal. Compensation will be competitive, and commensurate with relevant experience. Candidates should send a CV, a statement of research experience and interests, expected date of availability, and the contact information for three references to tpcoleman(a)ucsd.edu and pulkit(a)cmu.edu with the subject line “enteric-system postdoc”. Application review will proceed until the position is filled.

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NeuroFedora: A ready to use Free/Open source software platform for neuroscience
by Ankur Sinha Jan. 4, 2019

Jan. 4, 2019

Hello everyone, We would like to announce the NeuroFedora initiative[1] that we have recently begun working on. Our goal is to provide a ready to use, Free/Open source environment for researchers to use, to enable Free/Open Neuroscience[2]. NeuroFedora is based on the Fedora Linux distribution[3] that is part of the RedHat/Scientific Linux/CentOS eco-system. It is still in the early stages, but we already have a few of the commonly used computational neuroscience simulators available for use: - NEST - Genesis - Moose - Brian2 Neuron, PyNN, and a host of other tools are currently being worked upon for inclusion also. More information can be found in the documentation[1]. We welcome feedback, comments, ideas, and discussion to improve NeuroFedora. It is purely a volunteer driven community project, so we welcome contributions in all forms. You can get in touch with us using the communication channels listed here[4]. [1] https://docs.fedoraproject.org/en-US/neurofedora/overview/ [2] http://opensourceforneuroscience.org/ [3] https://getfedora.org/ [4] https://docs.fedoraproject.org/en-US/neurofedora/overview/#_communicating_a… -- Thank you, Regards, On behalf of the NeuroFedora team, Ankur Sinha PhD candidate in computational neuroscience at UH Biocomputation Volunteer at the Free/Open source Fedora project https://ankursinha.in https://biocomputation.herts.ac.uk https://fedoraproject.org/wiki/User:Ankursinha Time zone: Europe/London

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Post-Doc in Social Neuroscience
by Prata, Diana Jan. 4, 2019

Jan. 4, 2019

Happy new job! Two new Post-Doc positions opened at the Biomedical Neuroscience Lab (https://dpratalab.wordpress.com/; PI: Dr Diana Prata, with double affiliation in King’s College London), at the University of Lisbon - for research in human social neuroscience and the oxytocin and the dopamine systems in a highly interdisciplinary 3-year project involving pharmacology, genetics and a range of psychophysiological techniques. Expertise in fMRI and/or EEG highly preferred; and in eye-tracking and SCR favourable. Negotiable salary. Open until 26th of Jan 2019. We look forward to welcoming you!: http://www.eracareers.pt/opportunities/index.aspx?task=global&jobId=106526 Diana Prata, Phd Marie Curie Fellow Principal Investigator (Biomedical Neuroscience Lab), Instituto de Biofísica e Engenharia Biomédica, FCUL Visiting Lecturer, IoPPN, King's College London

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Faculty positions in Computational Neuroscience at Imperial College London. Deadline 13 Jan
by Clopath, Claudia Jan. 3, 2019

Jan. 3, 2019

Imperial College London is hiring at the level of Assistant Professor and Associate Professor (in the UK called Lecturers/Senior Lecturers) at the interface between Engineering and Biology broadly speaking, i.e. including Computational Neuroscience. Deadline 13th of January. Original advert: http://www.imperial.ac.uk/jobs/description/ENG00620/lecturerssenior-lecture…

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Call for applications - 2019 Nengo Summer School
by Peter Blouw Jan. 3, 2019

Jan. 3, 2019

[All details about this school can be found online at https://www.nengo.ai/summerschool] The Centre for Theoretical Neuroscience at the University of Waterloo is excited to announce our 6th annual Nengo summer school on large-scale brain modelling and neuromorphic computing. This two-week school will teach participants to use the Nengo simulation package to build state-of-the-art cognitive and neural models to run both in simulation and on neuromorphic hardware. Summer school participants will be given on-site access to Loihi, Intel’s new neuromorphic research chip [1], and will learn to run high-level applications on Loihi using Nengo! More generally, Nengo provides users with a versatile and powerful environment for designing cognitive and neural systems, and has been used to build what is currently the world's largest functional brain model, Spaun [2], which includes spiking deep learning, reinforcement learning, adaptive motor control, and cognitive control networks. For a look at last year's summer school, check out this short video: https://www.youtube.com/watch?v=NwtYgBB2N6I We welcome applications from all interested graduate students, postdocs, professors, and industry professionals with a relevant background. [1] Davies, et al. (2018). Loihi: A neuromorphic manycore processor with on-chip learning. IEEE Micro. Vol. 38 no. 1 pp. 82-99. [ https://ieeexplore.ieee.org/document/8259423] [2] Eliasmith, C., Stewart T. C., Choo X., Bekolay T., DeWolf T., Tang Y., Rasmussen, D. (2012). A large-scale model of the functioning brain. Science. Vol. 338 no. 6111 pp. 1202-1205. DOI: 10.1126/science.1225266. [ http://compneuro.uwaterloo.ca/files/publications/eliasmith.2012.pdf] ***Application Deadline: February 15, 2019*** Format: A combination of tutorials and project-based work. Participants are encouraged to bring their own ideas for projects, which may focus on testing hypotheses, modeling neural or cognitive data, implementing specific behavioural functions with neurons, expanding past models, or providing a proof-of-concept of various neural mechanisms. Hands-on tutorials, work on individual or group projects, and talks from invited faculty members will make up the bulk of day-to-day activities. A project demonstration event will be held on the last day of the school, with prizes for strong projects! Participants will have the opportunity to learn how to: - interface Nengo with neuromorphic hardware (e.g. Loihi, SpiNNaker) - build perceptual, motor, and cognitive models using spiking neurons - model anatomical, electrophysiological, cognitive, and behavioural data - use a variety of single cell models within a large-scale model - integrate machine learning methods into biologically oriented models - interface Nengo with cameras and robotic systems - implement modern nonlinear control methods in neural models - and much more… Date and Location: June 9th to June 21st, 2019 at the University of Waterloo, Ontario, Canada. Applications: Please visit http://www.nengo.ai/summerschool, where you can find more information regarding costs, travel, lodging, along with an application form listing required materials. If you have any questions about the school or the application process, please contact Peter Blouw (peter.blouw(a)appliedbrainresearch.com) The school is also partly supported by ONR and ABR, Inc. We look forward to hearing from you!

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PhD in Computational and Mathematical Neuroscience (EPSRC funded, 3.5 yrs, Sept 2019 start)
by James Rankin Jan. 3, 2019

Jan. 3, 2019

*PhD in Computational and Mathematical Neuroscience (EPSRC funded, 3.5 yrs, Sept 2019 start)* General information & apply (funding is primarily targeted at UK students): http://www.exeter.ac.uk/studying/funding/award/index.php?id=3386 Project description: http://www.exeter.ac.uk/codebox/phdprojects/Rankin-EPSRC-DTP-Project.pdf *Closing date 7th Jan 2019* This interdisciplinary project will develop computational and mathematical models of the auditory system to understand how complex stimuli like speech are encoded by spiking neurons in the midbrain. The auditory midbrain is a key hub in the auditory processing pathway, functioning as an important junction that relays and shapes neural signals as they ascend towards auditory cortex. Knowledge of the way in which complex sounds, e.g. speech, are encoded in the midbrain is crucial for understanding how dysfunction in the earlier auditory processing pathway (cochlea, auditory nerve, cochlear nucleus) leads to different types of hearing loss (a problem affecting 1 in 6 people in the UK). Working with neural recordings from the auditory midbrain in gerbils, a commonly-used animal for the study of low-frequency hearing, this project will develop mathematical and computational models of the auditory processing pathway. The aim is to understand the different roles of the patterns of inputs to midbrain neurons and their intrinsic response properties (e.g. their spiking rate) in shaping their responses to complex sounds. The project will use a dynamical systems approach to model the intrinsic properties of individual neurons in the midbrain in a biologically plausible way (working with, e.g. adaptive exponential integrate-and-fire neurons or the Hodgkin-Huxley equations). Inputs to these neurons will be based on established cochlear models and the biological details of the auditory nerve and cochlear nucleus. The resulting model will produce firing patterns directly comparable with neural recordings provided by the experimental supervisor. This data will be used to train and parameter fit the model using e.g. Bayesian optimisation or genetic algorithms. The resultant model will have explanatory power for the extent to which midbrain responses are shaped by its inputs from cochlear nucleus. Further, it will make predictions, testable in new experiments, of how midbrain responses will be affected by different dysfunctions of the early auditory system relating to hearing loss. The successful candidate will receive training dynamical systems theory and in the development and analysis of individual neuron and neural network models. An interdisciplinary approach, incorporating known biological details of the auditory processing pathway, will require the candidate to learn the relevant biology and neuroscience along with mathematical and computational techniques. The project will involve working closely with experimental neuroscientists and experimental data. This project provides a unique opportunity to receive training in mathematical modelling in close collaboration with experimentalists using cutting-edge methods recording spikes simultaneously from hundreds of neurons. Experience working on such interdisciplinary projects is highly sought after. Candidates with quantitative backgrounds (mathematics, physics, engineering) and from neuroscience programmes are encouraged to apply. Programming experience, knowledge of dynamical systems theory and experience in biological modelling are a plus. For further information, please contact me at the email address above. *For further information, please contact Dr James Rankin, email j.a.rankin(a)exeter.ac.uk <j.a.rankin(a)exeter.ac.uk>* http://emps.exeter.ac.uk/mathematics/staff/jar226

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