June 2024 - Comp-neuro - lists.cnsorg.org

PhD-Researcher and Lecturer, Neurocomputation of Language, Tilburg University (1.0 fte, six years)
by Harm Brouwer 27 Sep '24

27 Sep '24

PhD-Researcher and Lecturer, Neurocomputation of Language, Department of Cognitive Science and Artificial Intelligence, Tilburg University (1.0 fte, six years) The Neurocomputation of Language (NCL) lab from the Department of Cognitive Science & Artificial Intelligence (CSAI) at Tilburg University invites applications for a 6-year position. The successful applicant for this position would spend 60% of their time as a PhD student and 40% as a lecturer. The PhD project would be determined by the successful applicant and the lab director but should employ advanced statistical modeling and/or neurocomputational modeling to address one or more of the core themes of the lab: the nature and time course of language comprehension, the neural representation and computation of meaning, and the cortical organization of the language network. The educational tasks of the candidate could include leading practical sessions, grading assignments and exams, and (eventually) supervising thesis students. Requirements * Master’s degree in (computational) cognitive (neuro)science, neurobiology of language, or a related field. If you expect to obtain your degree before August 2024, you are also eligible. * Good knowledge of statistics and machine learning (practical experience with large language models is a plus). * Excellent knowledge of English and good academic writing skills. What we offer * A full-time position. * The selected candidate will receive a contract for six years. * You will receive a temporary employment contract for the duration of 12 months. A 5-year extension is offered upon a positive assessment. After one year your UFO profile will change to PhD Candidate / Lecturer. In the second year your initial education assignment is 40% and your research assignment is 60%. * A minimum gross salary of €3226- per month up to a maximum of € 4036- in the 6th year. For the duration of 12 months, you are entitled to a allowance. The amount is the difference in salary of scale 10 level 0 and scale PR level 0. * A holiday allowance of 8% and an end-of-year bonus of 8.3% (annually). * Researchers from outside the Netherlands may qualify for a tax-free allowance equal to 30% of their taxable salary (the 30% tax regulation). The University will apply for such an allowance on their behalf. Note that the 30% rule will be scaled back from 1 January 2024. For new applications, during a five-year term, the scheme will gradually decrease to a 10% rule. More specifically, this means that during the first 20 months of the term, 30% of the salary will be reimbursed untaxed. In the next 20 months, this percentage drops to 20% and during the last 20 months, the untaxed reimbursement is 10% of the salary. * Assistance in finding accommodation (for foreign employees). * Benefits such as an options model for terms and conditions of employment and reimbursement of moving expenses, also including excellent technical infrastructure, savings schemes and excellent sports facilities. The collective labor agreement of the Dutch Universities applies. Information and application More detailed project information can be provided on request: please contact dr. Harm Brouwer (h.brouwer(a)tilburguniversity.edu<mailto:h.brouwer@tilburguniversity.edu>), PI of the Neurocomputation of Language lab. To apply, please submit: * a motivation letter in which you describe why you want to be considered for this position, and why you are the right person to do it; * a full curriculum vitae, demonstrating academic excellence, including publications (if applicable); academic transcripts of your Bachelor and Master’s degrees; * a sample of writing, such as your Master’s thesis or a relevant paper; * contact details of two academic referees. The only way to apply is online<https://career5.successfactors.eu/career?career%5fns=job%5flisting&company=…>. The first deadline for application is July 21, 2024, the position is open until filled. The starting date of this position is negotiable but preferably no later than October 1st, 2024. Neurocomputation of Language lab The Neurocomputational of Language (NCL) lab combines neurocomputational modeling with empirical experimentation to investigate the neural basis of language. Grounded in principles of neural information processing, and informed by empirical insights on the nature and time course of comprehension, our models aim to offer mechanistic explanations of how an interpretation is constructed in real time as spoken or written linguistic signal unfolds on a, more or less, word-by-word basis. See the lab website for more information: https://www.tilburguniversity.edu/about/schools/tshd/departments/dca/lab/ne… The department of Cognitive Science & Artificial Intelligence (CSAI) The Cognitive Science and Artificial Intelligence department (https://csai.nl/) at Tilburg University is part of the Tilburg School of Humanities and Digital Sciences. The department emphasizes innovative research spanning a wide array of fields including computational linguistics and language technology, data-science, human-robot interaction, virtual reality and serious games. CSAI is a member of the Benelux Association for Artificial Intelligence, participates in the Special Interest Group for AI (SIG AI), and also participates in the Confederation of Laboratories for Artificial Intelligence Research in Europe (CLAIRE). Tilburg University and the CSAI department offer a vibrant international environment, with current CSAI staff originating from more than 10 countries. Tilburg School of Humanities and Digital Sciences Research and education at the Tilburg School of Humanities and Digital Sciences (TSHD) has a unique focus on humans in the context of the globalizing digital society, on the development of artificial intelligence and interactive technologies, on their impact on communication, culture and society, and on moral and existential challenges that arise. The School of Humanities and Digital Sciences consists of four departments: Communication and Cognition, Cognitive Science and Artificial Intelligence, Culture Studies and Philosophy; several research institutes and a faculty office. Also the University College Tilburg is part of the School. Each year around 275 students commence a Bachelor or (Pre) Master Program. The School has approximately 2000 students and 250 employees. Tilburg School of Humanities and Digital Sciences<https://www.tilburguniversity.edu/about/schools/humanities/> Recruitment code Tilburg University applies the recruitmentcode<https://kmt.nvp-hrnetwerk.nl/download/?id=21374> of the Dutch Association for Personnel Management & Organization Development (NVP). Disclaimer The text of this vacancy advertisement is copyright-protected property of Tilburg University. Use, distribution and further disclosure of the advertisement without express permission from Tilburg University is not allowed, and this applies explicitly to use by recruitment and selection agencies which do not act directly on the instructions of Tilburg University. Responses resulting from recruitment by non-contractors of Tilburg Universities will not be handled. -- [ Dr. Harm Brouwer, Associate Professor [ Cognitive Science and Artificial Intelligence, Tilburg University [ E-mail: h.brouwer(a)tilburguniversity.edu<mailto:h.brouwer@tilburguniversity.edu> [ http://www.hbrouwer.eu/

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Python Package: SER model
by Fabrizio Damicelli 08 Aug '24

08 Aug '24

Dear Computational Neuroscience Community, I would like to point you to a potentially useful Python Package that might be of interest for your research, especially in the realm dynamical models and spreading dynamics on networks. "ser": S(usceptible)E(xcited)R(efractory) model on graphs, a dynamical model of spreading excitations. Code Repository: https://github.com/fabridamicelli/ser As of today, a few people already trust it and the package registers >11K total downloads, ~500/month (pypi.org) and has been used already in a few research projects. A few interesting features: - It is light-weight and fast (`numba` accelerated), i.e. many experiments can be simply run on a laptop - Installation and getting started is easy: `pip install ser` - Example notebooks: https://github.com/fabridamicelli/ser/blob/main/examples The SER model is a classical cellular automaton model used to study all sorts of complex systems, ranging from forest fire dynamics to self-organized criticality in the brain. Despite of the simplicity of its setup, it is capable of generating complex emergent dynamics with absolutely non-trivial higher-order statistical properties. To learn more about the SER model and its applications, you might want to check out these references: - Messe et al. (2018). Toward a theory of coactivation patterns in excitable neural networks. doi.org/10.1371/journal.pcbi.1006084 - Haimovici et al. (2013). Brain Organization into Resting State Networks Emerges at Criticality on a Model of the Human Connectome. doi.org/10.1103/PhysRevLett.110.178101 - Damicelli et al. (2019). Topological reinforcement as a principle of modularity emergence in brain networks. doi.org/10.1162/netn_a_00085 Check it out and any feedback/suggestions/bug reports are more than welcome (simply open an issue: https://github.com/fabridamicelli/ser/issues) All the best, Fabrizio Damicelli

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Adam Tyson: Software Tools for Systems Neuroscience @ INCF/OCNS Software WG session on 9th July, 1500 UTC
by Ankur Sinha 08 Jul '24

08 Jul '24

Dear all, Apologies for the cross posts. Please do spread the word to interested colleagues. Adam Tyson from the Neuroinformatics Unit at the Sainsbury Wellcome Centre will talk about the software tools that their group develops at the next INCF/OCNS Software Working Group (WG) session on July 09 at 1500 UTC. There will be a Q&A/discussion session after the presentation, followed by any WG business. Please find the abstract and joining information below: - When: July 9, 1500 UTC - Where: Zoom: https://ucl.zoom.us/j/91017703246?pwd=RmdwMW9xL0FFaFVVL0Z6dUtnbkplZz09 - Web page: https://ocns.github.io/SoftwareWG/2024/06/26/wg-meeting-9-july-2024-softwar… Abstract: Understanding the brain requires processing and analysing large, multidimensional datasets. Systems neuroscience, in particular, has undergone a drastic transformation, with individual labs now commonly generating terabytes or even petabytes of data annually. While there has been an increase in software tools to process this data, many of these tools are single-purpose, inadequately maintained, or poorly integrated with the broader software ecosystem. This talk will outline some of the tools we are developing for computational neuroanatomy, video behavioural analysis, and data management. About the speaker: Adam Tyson is the Head Research Engineer at the Sainsbury Wellcome Centre and Gatsby Computational Neuroscience Unit at University College London. He established the Neuroinformatics Unit, a research software engineering team dedicated to developing robust, maintainable, and user-friendly software tools for neuroscience and machine learning. Adam completed a PhD in neuroscience at King's College London before working as a software developer at the Institute of Cancer Research and the Sainsbury Wellcome Centre. Resources/links: - BrainGlobe: https://brainglobe.info/ - Movement: https://movement.neuroinformatics.dev/ - NeuroBluePrint: https://neuroblueprint.neuroinformatics.dev/ - Neuroinformatics Unit: https://neuroinformatics.dev/ - Sainsbury Wellcome Centre: https://www.sainsburywellcome.org/web/ - Gatsby Computational Neuroscience: https://www.ucl.ac.uk/gatsby/gatsby-computational-neuroscience-unit On behalf of the WG, -- Thanks, Regards, Ankur Sinha (He / Him / His) | https://ankursinha.in Research Fellow at the Silver Lab, University College London | http://silverlab.org/ Free/Open source community volunteer at the NeuroFedora project | https://neuro.fedoraproject.org Time zone: Europe/London

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Postdoc in physics-based machine learning jointly with the MedTech industry
by Erik Fransén 30 Jun '24

30 Jun '24

Postdoc in physics-based machine learning jointly with the MedTech industry Are you looking for a postdoc combining academic research in machine learning with close collaboration with the industry? Do you want to join our research group at KTH developing fundamental machine learning times series algorithms and the team at Getinge producing the next generation ventilators for the intensive care? Are you passionate about physical simulation and proficient in parameter estimation? If so, we believe you will find our project developing a digital twin of the respiratory system a perfect match. Find the ad and apply: https://kth.varbi.com/en/what:job/jobID:739922/ Best regards, Erik Fransén and Elira Maksuti

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Online Vocational Internship: Python programing and Hypothesis Testing
by PRANAV NERURKAR 28 Jun '24

28 Jun '24

Dear all, Apologies for the cross posts. Please spread the word to interested colleagues. Greetings Hope you are doing well. We are launching an internship. Registration: https://internships.utkarshminds.com/ In summary this two months internship has: 1. Students will learning advanced data analysis and work on 25 projects 2. After completion they can get a internship completion certificate 3. They can add in their resume and increase chances of getting a job 4. Only a one time fee of Rs. 99 (USD 2/EURO 2) is taken from them *Description:* This internship is designed to equip you with the essential skills and knowledge to become an Applied Python Developer. You will learn how to write efficient Python code, work with data structures, handle file operations, and build real-world applications using Python. *Key Highlights:* 1. Learn to write efficient Python code 2. Master data structures and algorithms in Python 3. Build real-world applications with Python *What you will learn:* 1. Write Efficient Python Code 2. Learn best practices for writing clean, readable, and efficient Python code 3. Data Structures and Algorithms 4. Master essential data structures and algorithms in Python for effective problem solving 5. Build Real-world Applications 6. Apply your Python skills to build practical applications and projects Regards *Pranav A. NERURKAR* Specialist - AI & Data science UTKARSH MINDS +91 961-999-77-97 pranav.nerurkar@ <amandine.deplantes(a)igonogo.io>utkarshminds.com www.utkarshminds.com Nirmala Sadan, Jaya Nagar, Kasturba cross road no. 1, Mumbai - 400066

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Early bird registration CLOSING TOMORROW
by INCF 27 Jun '24

27 Jun '24

Join us at the INCF Neuroinformatics Assembly 2024 <https://neuroinformatics.incf.org/> on Sep 23-25 at the University of Texas at Austin! Early bird registration <https://neuroinformatics.incf.org/register> closes tomorrow - register before end-of-day on Fri Jun 28 to get the early bird price! The INCF Assembly is a unique venue where neuroscience standards developers, infrastructure providers, and software developers have the opportunity to interact with the research community to share the latest advancements in neuroinformatics. The meeting is followed by 3 training courses: Driving collaboration in neurophysiology with NWB and DANDI, Introduction to reproducible neuroimaging data processing and analysis, and DataJoint pipelines for your neuroscience experiments on Sep 26-27. This year's theme Brain Meets AI: Pioneering the Future of Neuroinformatics Our keynote speakers are Elisabeth Bik (Microbiome Digest), Timo Dickscheid (Jülich Research Cente), Hanchuan Peng (SEU-ALLEN Joint Center), Danilo Bzdok (Mila - Quebec Artificial Intelligence Institute), and Viktor Jirsa (Institut de Neurosciences des Systemès). See you at Assembly 2024! /The INCF Team

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Advanced Neural Data Analysis and Neuroinformatics School (ANDA-NI) - Apply by July 31, 2024!
by Michael Denker 27 Jun '24

27 Jun '24

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Deadline approaching - Bernstein Conference 2024
by Alexander Lammers 27 Jun '24

27 Jun '24

The deadline for the submission of poster abstracts for the Bernstein Conference 2024 is approaching! Abstract submission: https://bernstein-network.de/bernstein-conference/abstract-submission/<https://bernstein-network.de/bernstein-conference/registration/> ____ Each year the Bernstein Network invites the international computational neuroscience community to the annual Bernstein Conference for intensive scientific exchange. It has established itself as one of the most renowned conferences worldwide in this field, attracting students, postdocs, and PIs from around the world to meet and discuss new scientific discoveries. Conference website: https://bernstein-network.de/bernstein-conference/ ____ IMPORTANT DATES * Poster abstract submission deadline: Jul 10, 2024 (15:00 CEST) * Early registration deadline: Jul 31, 2024 (23:59 CEST) * Late registration deadline: Sep 11, 2024 (23:59 CEST) * Bernstein Conference: Sep 29 – Oct 2, 2024 ____ INVITED SPEAKERS Dmitriy Aronov (Columbia University, USA) Helen Barron (University of Oxford, UK) Elizabeth Buffalo (University of Washington, USA) Alex Cayco Gajic (Ecole Normale Supérieure, France) Jan Drugowitsch (Harvard University, USA) Jakob Macke (University of Tübingen, Germany) Tirin Moore (Stanford University, USA) Mala Murthy (Princeton University, USA) Memming Park (Champalimaud Foundation, Portugal) Susanne Schreiber (Humboldt Universität zu Berlin, Germany) Xiao-Jing Wang (New York University, USA) ____ CONFERENCE COMMITTEE Matthias Kaschube (Conference Chair) Srdjan Ostojic (Program Chair) Tatiana Engel (Program Vice Chair) Maria Eckstein (Workshop Chair) Wiktor Młynarski (Workshop Vice Chair) & Athena Akrami, Mehrdad Jazayeri, Jennifer Li, Scott Linderman, Ashok Litwin-Kumar, Ida Momennejad, Christina Savin, Andrew Saxe, Daniela Vallentin, Friedemann Zenke. ____ For any further questions, please contact: bernstein.conference(a)fz-juelich.de<mailto:bernstein.conference@fz-juelich.de> ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Jülich GmbH 52425 Jülich Sitz der Gesellschaft: Jülich Eingetragen im Handelsregister des Amtsgerichts Düren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Stefan Müller Geschäftsführung: Prof. Dr. Astrid Lambrecht (Vorsitzende), Karsten Beneke (stellv. Vorsitzender), Prof. Dr. Ir. Pieter Jansens ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

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2024 Brain-Score Benchmarking Competition -- Deadline coming up
by Martin Schrimpf 27 Jun '24

27 Jun '24

[Image] The Brain-Score Benchmarking Competition<https://www.brain-score.org/competition/> aims to find behavioral and neural benchmarks on which the predictions of our current top models break down. We are entering the final week of the 2024 competition - please submit your benchmarks to highlight the flaws in current state-of-the-art models of vision (and win prizes)! In 2022, the first Brain-Score Competition led to new and improved models of primate vision that predicted existing benchmarks reasonably well. In this year's Brain-Score Competition 2024, we are closing the loop on testing model predictions by rewarding those benchmarks that show where models are the least aligned to the primate visual ventral stream. The Competition is open to the scientific community and we provide an infrastructure to evaluate a variety of models on new behavioral and neural benchmarks in a standardized and unified manner. In addition, we will incentivize benchmark submissions by providing visibility to participants and a $10,000 prize pool<https://www.brain-score.org/competition/#tracks> to the winning benchmarks. Submissions<https://www.brain-score.org/profile/vision/> are open until June 30, 2024. For regular updates related to the competition, please follow Brain-Score on Twitter<https://twitter.com/brain_score> and join our community<https://www.brain-score.org/community>. Good Luck! Competition Tracks * Behavioral: This track will reward those benchmarks that show-case model short-comings in predicting behavior (human or non-human primate). The winning submissions will be the behavioral benchmarks with the lowest model scores, mean-averaged over all models, i.e. as close as possible to 0. The benchmarks can target any behavioral task that the models engage on (labeling, class probabilities, odd-one-out ; see the model interface<https://brain-score.readthedocs.io/en/latest/modules/model_interface.html#b…>). 1st prize: $3,000; 2nd prize: $2,000. * Neural: This track will reward those benchmarks that show-case model short-comings in predicting neural activity across the primate visual ventral stream. The winning submissions will be the neural benchmarks with the lowest model scores, mean-averaged over all models, i.e. as close as possible to 0. The benchmarks can target any region(s) in the visual ventral stream: V1, V2, V4, IT (see the model interface<https://brain-score.readthedocs.io/en/latest/modules/model_interface.html#b…>). Brain recordings can be from human or non-human primates. 1st prize: $3,000; 2nd prize: $2,000.

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PhD position in Computational Neuroscience, TU Berlin, Germany
by Klaus Obermayer 27 Jun '24

27 Jun '24

Dear moderator, can you post the job announcement below? Thank you very much! Best regards Klaus Obermayer ----------------------------------------------------------------------------------------------------------- *Neural Information Processing Group @ Technische Universität Berlin* *PhD Position in Computational Neuroscience (salary grade E13 TV-L 100%)* *Modelling Neural Population Dynamics and the Effects of External Stimulation* *Faculty IV - Institute of Software Engineering and Theoretical Computer Science / Neural Information Processing Group* *Earliest starting date: *Sept. 1st, 2024 *Period:*5 years *Application Deadline: *July 26, 2024 *Reference number: *IV-307/24** *Working field: *Participation in the projects of the our research group in the field of computational neuroscience on modelling neural dynamics and the effects of external stimulation; collaboration with theoretical, experimental, and clinical research groups of the CRC 1315 (https://www.sfb1315.de/) and the Bernstein Center for Computational Neuroscience Berlin (https://www.bccn-berlin.de/) assistance in the maintenance of the computer infrastructure of the research group; teaching tutorials for introductory courses in programming and algorithms & architectures for non-CS students. For information about our research group see https://www.tu.berlin/en/ni. *Requirements: *Successfully completed university degree (Master, Diplom, or equivalent) in Computational Neuroscience, Computer Science, Electrical Engineering, Mathematics, Physics, or related fields; in-depth knowledge in nonlinear dynamics; a very good command of the English and German languages; the ability to teach in German; very good programming skills. Experience in modelling neural systems and teaching experience are desirable. Please send your application with the usual documents (including CV, transcripts of records, German language certificate for non-native speakers) exclusively by e-mail to Prof. Dr. Klaus Obermayer at *klaus.obermayer(a)tu-berlin.de*.

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