Three neuroinformatics positions in ferret brain research
(apologies for any cross-postings) In a collaboration between University Medical Center Eppendorf (Hamburg, Germany), the Donders Institute (Radboud University Nijmegen, The Netherlands), and Institute Pasteur (Paris, France), three positions at the postdoc level are available. The research focuses on studying the architecture and connectivity of the ferret brain, encompassing research on architecture and morphology (particularly, cortical folding) of the developing brain as well as the collation and analysis of brain connectivity in the adult brain. The project will make available a public data set of MRI and microscopic images of the developing ferret brain, together with tools for the online annotation of these data. The Nijmegen and Paris components of the research both develop the tools and perform an initial analysis of the MRI and microscopy data. The Hamburg component continues the development of a public online database of brain connectivity in conjunction with the development of an atlas of the adult ferret brain. The three positions are described in detail below. 1. Position at Radboud University. The full text of this position is available here: https://www.academictransfer.com/employer/RUN/vacancy/32519/lang/en/ The summary is: "We are looking for a highly motivated postdoctoral candidate to contribute to a neuroinformatics platform that allows researchers worldwide to jointly work on the creation of brain atlases. The scientific use case is to build a detailed developmental brain atlas for the ferret. The ferret is special in that the folding patterns of its brain develop after birth, so that the folding process can be studied on the basis of a series of combined MRI and microscopy data sets. Data will be provided by our partner Dr. Roberto Toro from Institute Pasteur in Paris, who is also the creator of the platform prototype (www.siphonophore.org/microdraw). You will work together with Dr. Rembrandt Bakker who leads the Scalable Brain Atlas project (www.scalablebrainatlas.org). The project is funded by the Netherlands Organization for Scientific Research (NWO) and its French counterpart and is part of a FLAG-ERA funding scheme that falls under the umbrella of the Human Brain Project. Further inquiries: r.bakker@fz-juelich.de, p.tiesinga@science.ru.nl 2. Position at University Medical Center Eppendorf, Hamburg, Germany We seek a Researcher in Neuroinformatics at the predoctoral or postdoctoral level, to curate an online database of ferret brain architecture and connectivity. The position is available immediately and runs until 30th June 2019. Further extensions are possible. The researcher will be expected to continue the conceptual and technical development of the ferretome.org database system, and supervise the population of the database with data collated from the literature as well as newly performed anatomy experiments. Moreover, the researcher will work on the integration of the ferretome with online atlases of the ferret brain. The researcher will be based at the Department of Computational Neuroscience, University Medical Center Eppendorf, Hamburg, Germany. The position is part of the Collaborative Research Center 936 (sfb936.net) âMulti-site communication in the brain" and would suit a researcher with background in computer science or biology. In any case, the position requires strong computer skills, particularly in database systems, high proficiency in written and spoken English and great curiosity. The researcher needs to integrate well with a highly multinational, multidisciplinary team at the Department of Computational Neuroscience as well as the Research Center 936. For researchers at the predoctoral level, the position offers the opportunity for obtaining a PhD degree. For further inquiries contact Prof. Claus C. Hilgetag, PhD: c.hilgetag@uke.de. 3. Position at Institute Pasteur This position at the postdoctoral level will commence after the microscopy data for the developmental ferret atlas has become available. The candidate should have a background in computational neuroanatomy or neuroinformatics, and preferrably have experience with online development and data visualisation. You will be working together with Ophélie Foubet, who is doing a PhD that focuses on the mechanics of neocortical development. Contact Roberto Toro: roberto.toro@gmail.com for details about this position. -- Dr. R. Bakker Forschungszentrum Jülich / Radboud University Nijmegen +31645774665 ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------
participants (1)
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Rembrandt Bakker