INCF/OCNS Software Working Group sessions: Pierre Yger: SpikeInterface: 14 May 1500 UTC
Dear all, Apologies for the cross posts. Pierre Yger will present SpikeInterface at the next open INCF/OCNS Software Working Group (WG) session on May 14 at 1500 UTC. There will be a Q&A session after the presentation, followed by WG business. Please find the abstract and joining information below: - When: May 14, 1500 UTC - Where: Zoom (https://ucl.zoom.us/j/91017703246?pwd=RmdwMW9xL0FFaFVVL0Z6dUtnbkplZz09) - Web page: https://ocns.github.io/SoftwareWG/2024/05/07/wg-meeting-14-may-2024-spikeint... Abstract: - https://elifesciences.org/articles/61834 - https://spikeinterface.readthedocs.io/en/latest/ Much development has been directed toward improving the performance and automation of spike sorting. This continuous development, while essential, has contributed to an over-saturation of new, incompatible tools that hinders rigorous benchmarking and complicates reproducible analysis. To address these limitations, we developed SpikeInterface, a Python framework designed to unify preexisting spike sorting technologies into a single codebase and to facilitate straightforward comparison and adoption of different approaches. With a few lines of code, researchers can reproducibly run, compare, and benchmark most modern spike sorting algorithms; pre-process, post-process, and visualize extracellular datasets; validate, curate, and export sorting outputs; and more. In this paper, we provide an overview of SpikeInterface and, with applications to real and simulated datasets, demonstrate how it can be utilized to reduce the burden of manual curation and to more comprehensively benchmark automated spike sorters. -- Thanks, Regards, Ankur Sinha (He / Him / His) | https://ankursinha.in Research Fellow at the Silver Lab, University College London | http://silverlab.org/ Free/Open source community volunteer at the NeuroFedora project | https://neuro.fedoraproject.org Time zone: Europe/London
participants (1)
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Ankur Sinha